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Flood-inundation maps for the North Branch Elkhart River at Cosperville, Indiana

Digital flood-inundation maps for a reach of the North Branch Elkhart River at Cosperville, Indiana (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army Corps of Engineers, Detroit District. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at USGS streamgage 04100222, North Branch Elkhart River at Cosperville, Ind. Current conditions for estimating near-real-time areas of inundation using USGS streamgage information may be obtained on the Internet at http://waterdata.usgs.gov/in/nwis/uv?site_no=04100222 . In addition, information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood warning system ( http:/water.weather.gov/ahps/ ). The NWS AHPS forecasts flood hydrographs at many places that are often colocated with USGS streamgages, including the North Branch Elkhart River at Cosperville, Ind. NWS AHPS-forecast peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. For this study, flood profiles were computed for the North Branch Elkhart River reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relations at USGS streamgage 04100222, North Branch Elkhart River at Cosperville, Ind., and preliminary high-water marks from the flood of March 1982. The calibrated hydraulic model was then used to determine four water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The simulated water-surface profiles were then combined with a geographic information system (GIS) digital elevation model (DEM, derived from Light Detection and Ranging [LiDAR]) in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage 04100222, North Branch Elkhart River at Cosperville, Ind., and forecast stream stages from the NWS AHPS, provides emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

Indiana↗

Flood-inundation maps for the Yellow River at Plymouth, Indiana

Digital flood-inundation maps for a 4.9-mile reach of the Yellow River at Plymouth, Indiana (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage 05516500, Yellow River at Plymouth, Ind. Current conditions for estimating near-real-time areas of inundation using USGS streamgage information may be obtained on the Internet at http://waterdata.usgs.gov/in/nwis/uv?site_no=05516500 . In addition, information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood-warning system ( http:/water.weather.gov/ahps/ ). The NWS AHPS forecasts flood hydrographs at many sites that are often collocated with USGS streamgages, including the Yellow River at Plymouth, Ind. NWS AHPS-forecast peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood and forecasts of flood hydrographs at this site. For this study, flood profiles were computed for the Yellow River reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the current stage-discharge relations at the Yellow River streamgage, in combination with the flood-insurance study for Marshall County (issued in 2011). The calibrated hydraulic model was then used to determine eight water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The 1-percent annual exceedance probability flood profile elevation (flood elevation with recurrence intervals within 100 years) is within the calibrated water-surface elevations for comparison. The simulated water-surface profiles were then used with a geographic information system (GIS) digital elevation model (DEM, derived from Light Detection and Ranging [lidar]) in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage 05516500, Yellow River at Plymouth, Ind., and forecast stream stages from the NWS AHPS, provides emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for postflood recovery efforts.

Indiana↗

Flood-inundation maps for the Wabash River at Lafayette, Indiana

Digital flood-inundation maps for an approximately 4.8-mile reach of the Wabash River at Lafayette, Indiana (Ind.) were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science web site at https://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at USGS streamgage 03335500, Wabash River at Lafayette, Ind. Current streamflow conditions for estimating near-real-time areas of inundation using USGS streamgage information may be obtained on the internet at https://waterdata.usgs.gov/in/nwis/uv?site_no=03335500 . In addition, information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood-warning system ( https://water.weather.gov/ahps/ ). The NWS AHPS forecasts flood hydrographs at many places that are often colocated with USGS streamgages, including the Wabash River at Lafayette, Ind. NWS AHPS-forecast peak-stage information may be used with the maps developed in this study to show predicted areas of flood inundation. For this study, flood profiles were computed for the Wabash River reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relations at USGS streamgage 03335500, Wabash River at Lafayette, Ind., and high-water marks from the flood of July 2003 (U.S. Army Corps of Engineers [USACE], 2007). The calibrated hydraulic model was then used to determine 23 water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The simulated water-surface profiles were then combined with a geographic information system digital elevation model derived from light detection and ranging to delineate the area flooded at each water level. The availability of these maps, along with internet information regarding current stage from the USGS streamgage 03335500, Wabash River at Lafayette, Ind., and forecasted high-flow stages from the NWS AHPS, will provide emergency management personnel and residents with information that is critical for flood-response activities such as evacuations and road closures, and for postflood recovery efforts.

Indiana↗

Estimating potential wetland extent along selected river reaches in Indiana using streamflow statistics and flood-inundation mapping techniques

In this study potential wetland extents were estimated for 12 river reaches covering about 750 river miles in Indiana and parts of Illinois and Ohio. The study was completed by the U.S. Geological Survey in cooperation with the U.S. Department of Agriculture, Natural Resources Conservation Service. This study follows and adds to the work completed in a pilot study and determines that potential wetland extents can be estimated using streamflow statistics, streamgage data, and flood-inundation mapping techniques. The study was designed to assist in the Agricultural Conservation Easement Program. The Agricultural Conservation Easement Program is a voluntary program administered by the Natural Resources Conservation Service that provides technical and financial assistance to private landowners and Tribes to restore, protect, and enhance wetlands in exchange for retiring eligible land from agriculture. For a site to be eligible for wetland restoration, it should be in a zone with sustained or frequent flooding. This study calculated the flows that lasted for a period of 7 consecutive days on average at least once every 2 years (a value termed the “7MQ2”) for all the U.S. Geological Survey streamgages within the selected river reaches. These 7MQ2 flows were related to the stage-discharge tables for each streamgage, and a corresponding water-surface elevation was determined. Maps of estimated wetland extent were prepared using the 7MQ2 inundation elevation data in conjunction with bare-earth land-surface elevation data made publicly available through the online geospatial data clearinghouses of Indiana, Illinois, and Ohio. Flood-inundation mapping techniques were applied with the aid of geographic information system software to generate water-surface planes that represent inundation elevations associated with the 7MQ2 streamflow. Land-surface elevation data from high-resolution digital elevation models were subtracted from the water-surface planes to produce maps of wetland extent. The 12 map products, including datasets and geoprocessing tools, produced from this study will aid the National Resources Conservation Service and its partners with the onsite inundation-zone verification in agricultural land for potential restoration.

Illinois, Indiana, Ohio↗

Virulence of viral hemorrhagic septicemia virus (VHSV) genotypes Ia, IVa, IVb, and IVc in five fish species.

The susceptibility of yellow perch Perca flavescens , rainbow trout Oncorhynchus mykiss , Chinook salmon O. tshawytscha , koi Cyprinus carpio koi , and Pacific herring Clupea pallasii to 4 strains of viral hemorrhagic septicemia virus (VHSV) was assessed. Fish were challenged via intraperitoneal injection with high (1 × 10 6 plaque-forming units, PFU) and low (1 × 10 3 PFU) doses of a European strain (genotype Ia), and North American strains from the West coast (genotype IVa), Great Lakes (genotype IVb), and the East coast (genotype IVc). Pacific herring were exposed to the same VHSV strains, but at a single dose of 5 × 10 3 PFU ml -1 by immersion in static seawater. Overall, yellow perch were the most susceptible, with cumulative percent mortality (CPM) ranging from 84 to 100%, and 30 to 93% in fish injected with high or low doses of virus, respectively. Rainbow trout and Chinook salmon experienced higher mortalities (47 to 98% CPM) after exposure to strain Ia than to the other virus genotypes. Pacific herring were most susceptible to strain IVa with an average CPM of 80% and moderately susceptible (42 to 52% CPM) to the other genotypes. Koi had very low susceptibility (≤5.0% CPM) to all 4 VHSV strains. Fish tested at 7 d post challenge were positive for all virus strains, with yellow perch having the highest prevalence and concentrations of virus, and koi the lowest. While genotype Ia had higher virulence in salmonid species, there was little difference in virulence or host-specificity between isolates from subtypes IVa, IVb, and IVc.

Diseases of Aquatic Organisms↗

Extreme precipitation and flooding contribute to sudden vegetation dieback in a coastal salt marsh

Climate extremes are becoming more frequent with global climate change and have the potential to cause major ecological regime shifts. Along the northern Gulf of Mexico, a coastal wetland in Texas suffered sudden vegetation dieback following an extreme precipitation and flooding event associated with Hurricane Harvey in 2017. Historical salt marsh dieback events have been linked to climate extremes, such as extreme drought. However, to our knowledge, this is the first example of extreme precipitation and flooding leading to mass mortality of the salt marsh foundation species, Spartina alterniflora . Here, we investigated the relationships between baseline climate conditions, extreme climate conditions, and large-scale plant mortality to provide an indicator of ecosystem vulnerability to extreme precipitation events. We identified plant zonal boundaries along an elevation gradient with plant species tolerant of hypersaline conditions, including succulents and graminoids, at higher elevations, and flood-tolerant species, including S. alterniflora , at lower elevations. We quantified a flooding threshold for wetland collapse under baseline conditions characterized by incremental increases in flooding (i.e., sea level rise). We proposed that the sudden widespread dieback of S. alterniflora following Hurricane Harvey was the result of extreme precipitation and flooding that exceeded this threshold for S. alterniflora survival. Indeed, S. alterniflora dieback occurred at elevations above the wetland collapse threshold, illustrating a heightened vulnerability to flooding that could not be predicted from baseline climate conditions. Moreover, the spatial pattern of vegetation dieback indicated that underlying stressors may have also increased susceptibility to dieback in some S. alterniflora marshes.Collectively, our results highlight a new mechanism of sudden vegetation dieback in S. alterniflora marshes that is triggered by extreme precipitation and flooding. Furthermore, this work emphasizes the importance of considering interactions between multiple abiotic and biotic stressors that can lead to shifts in tolerance thresholds and incorporating climate extremes into climate vulnerability assessments to accurately characterize future climate threats.

Texas↗

Compilation of a nationwide river image dataset for identifying river channels and river rapids via deep learning

Remote sensing enables large-scale, image-based assessments of river dynamics, offering new opportunities for hydrological monitoring. We present a publicly available dataset consisting of 281,024 satellite and aerial images of U.S. rivers, constructed using an Application Programming Interface (API) and the U.S. Geological Survey’s National Hydrography Dataset. The dataset includes images, primary keys, and ancillary geospatial information. We use a manually labeled subset of the images to train models for detecting rapids, defined as areas where high velocity and turbulence lead to a wavy, rough, or even broken water surface visible in the imagery. To demonstrate the utility of this dataset, we develop an image segmentation model to identify rivers within images. This model achieved a mean test intersection-over-union ( 𝐼 𝑜 𝑈 ) of 0.57, with performance rising to an actual 𝐼 𝑜 𝑈 of 0.89 on the subset of predictions with high confidence (predicted 𝐼 𝑜 𝑈 > 0.9). Following this initial segmentation of river channels within the images, we trained several convolutional neural network (CNN) architectures to classify the presence or absence of rapids. Our selected model reached an accuracy and F1 score of 0.93, indicating strong performance for the classification of rapids that could support consistent, efficient inventory and monitoring of rapids. These data provide new resources for recreation planning, habitat assessment, and discharge estimation. Overall, the dataset and tools offer a foundation for scalable, automated identification of geomorphic features to support riverine science and resource management.

Remote Sensing↗

Tracking sandhill crane migration from Saskatchewan to the Gulf Coast

Four adult sandhill cranes (Grus canadensis rowani) were captured in east-central Saskatchewan, equipped with transmitters, and tracked by satellite to determine if their migration routes and wintering areas would allow their use as guide birds to establish a new migratory flock of whooping cranes (G. americana). Two birds captured near Yorkton died or their transmitters were lost before migration. Two adults from the Overflowing River moved to staging areas in southern Saskatchewan in September. By 29 September, Crane A left Saskatchewan and moved to North Dakota where it remained until late October. By 21 December, it arrived a few km inland from the Gulf Coast near McFaddin, Texas, 3,378 km from its capture location. It remained there until at least 9 March 1995. On 15 March, it was relocated near Grand Island, Nebraska and by 20 April, it had returned to the Overflowing River area. Crane B spent most of September and October near the Quill Lakes, Saskatchewan, then migrated with brief stops in South Dakota and Kansas, arriving 29 November at its winter area near the northwestern comer of the Laguna Madre in Tamaulipas, Mexico, 3,998 km from its summering area. It remained there until at least 25 December, whereafter no further transmissions were received. Because both cranes wintered or migrated near the current whooping crane winter area at Aransas National Wildlife Refuge (Aransas), Texas, this population was judged unsuitable to provide guide birds for a new flock of whooping cranes.

Book chapter↗

Annual movements of a steppe eagle (Aquila nipalensis) summering in Mongolia and wintering in Tibet

An adult female steppe eagle (Aquila nipalensis Hodgson) was captured and fitted with a satellite transmitter in June 1995 in southeastern Mongolia. In fall, it traveled southwest towards India as expected, but stopped in southeastern Tibet and wintered in a restricted zone within the breeding range of the steppe eagle. In spring, the bird returned to the same area of Mongolia where it was captured. These observations, though derived from the movements of a single bird, suggest three things that are contrary to what is generally believed about steppe eagle biology. First, not all steppe eagles move to warmer climes in winter. Second, not all steppe eagles are nomadic in winter. Finally, because our bird wintered at the periphery of the steppe eagle breeding range in Tibet, perhaps birds that breed in this same area also winter there. If so, not all steppe eagles are migratory.

Journal of the Bombay Natural History Society↗

Potential exposure of larval and juvenile delta smelt to dissolved pesticides in the Sacramento-San Joaquin Delta, California

The San Francisco Estuary is critical habitat for delta smelt Hypomesus transpacificus, a fish whose abundance has declined greatly since 1983 and is now listed as threatened. In addition, the estuary receives drainage from the Central Valley, an urban and agricultural region with intense and diverse pesticide usage. One possible factor of the delta smelt population decline is pesticide toxicity during vulnerable larval and juvenile stages, but pesticide concentrations are not well characterized in delta smelt spawning and nursery habitat. The objective of this study was to estimate the potential exposure of delta smelt during their early life stages to dissolved pesticides. For 3 years (1998-2000), water samples from the Sacramento-San Joaquin Delta were collected during April-June in coordination with the California Department of Fish and Game's delta smelt early life stage monitoring program. Samples were analyzed for pesticides using solid-phase extraction and gas chromatography/mass spectrometry. Water samples contained multiple pesticides, ranging from 2 to 14 pesticides in each sample. In both 1999 and 2000, elevated concentrations of pesticides overlapped in time and space with peak densities of larval and juvenile delta smelt. In contrast, high spring outflows in 1998 transported delta smelt away from the pesticide sampling sites so that exposure could not be estimated. During 2 years, larval and juvenile delta smelt were potentially exposed to a complex mixture of pesticides for a minimum of 2-3 weeks. Although the measured concentrations were well below short-term (96-h) LC50 values for individual pesticides, the combination of multiple pesticides and lengthy exposure duration could potentially have lethal or sublethal effects on delta smelt, especially during early larval development.

American Fisheries Society Symposium↗

Geophysical investigation of seamounts near the Ogasawara fracture zone, western Pacific

This paper provides an analysis of multi-channel seismic data obtained during 2000-2001 on seamounts near the Ogasawara Fracture Zone (OFZ) northwest of the Marshall Islands in the western Pacific. The OFZ is unique in that it is a wide rift zone that includes many seamounts. Seven units are delineated on the basis of acoustic characteristics and depth: three units (I, II, and III) on the summit of seamounts and four units (IV, V, VI, and VII) in basins. Acoustic characteristics of layers on the summit of guyots and dredged samples indicate that the seamounts had been built above sea level by volcanism. This was followed by reef growth along the summit margin, which enabled deposition of shallow-water carbonates on the summit, and finally by subsidence of the edifices. The subsidence depth of the seamounts, estimated from the lower boundary of unit II, ranges between 1,550 and 2,040 m. The thick unit I of the southern seamounts is correlated with proximity to the equatorial high productivity zone, whereas local currents may have strongly affected the distribution of unit I on northern seamounts. A seismic profile in the basin around the Ita Mai Tai and OSM4 seamounts shows an unconformity between units IV and V, which is widespread from the East Mariana Basin to the Pigafetta Basin. Copyright ?? The Society of Geomagnetism and Earth, Planetary and Space Sciences (SGEPSS); The Seismological Society of Japan; The Volcanological Society of Japan; The Geodetic Society of Japan; The Japanese Society for Planetary Sciences; TERRAPUB.

Earth, Planets and Space↗

Blood lead exposure concentrations in mottled ducks ( Anas fulvigula ) on the upper Texas coast

The mottled duck (Anas fulvigula) is a non-migratory waterfowl species dependent upon coastal marsh systems, including those on the Texas Chenier Plain National Wildlife Refuge (NWR) Complex, and considered a regional indicator species of marsh habitat quality. Research from the early 1970s, 1990s, and early-2000s indicated that mottled ducks continued to exhibit elevated wing-bone lead (Pb) concentrations, decades after implementation of non-toxic shot regulations. However, wing-bone concentrations reflect lifetime accumulation of Pb, whereas blood Pb concentrations reflect more recent exposure. To identify current potentially relevant temporal windows of Pb exposure, we collected 260 blood samples from mottled ducks during summer (n=124) and winter (n=136) from 2010–2012 on the Texas Chenier Plain NWR Complex. We quantified baseline blood Pb concentrations for all ages of mottled ducks, and hypothesized that blood lead concentrations would remain elevated above background levels (200 µg L–1) despite the 1983 and 1991 lead shot bans. Blood Pb concentrations ranged from below detection limits to >12,000 µg L–1, where >200 µg L–1 was associated with exposure levels above background concentrations. Male mottled ducks had the greatest blood Pb concentrations (30 times greater than females) with concentrations greater during winter than summer. Likewise, the proportion of exposed (>200 µg L–1) females increased from 14%–47% from summer to winter, respectively. Regardless of sex, adult mottled duck blood Pb concentrations were five times greater than juveniles, particularly during winter. We identified five plausible models that influenced blood Pb levels where year, site, and interactions among age*sex*season and between age*season were included in the top-ranked models. Frequency of exposure was greatest during winter, increasing from 12% in summer to 55% in winter, indicating that a temporal exposure window to environmental Pb exists between nesting and hunting seasons. Blood Pb concentrations remain elevated in mottled ducks despite Pb shot bans enacted >25 years prior to this study. If Pb levels in mottled ducks becomes a conservation concern, regional monitoring of blood Pb concentrations would be appropriate with a focus upon elucidating potential reasons for the variation among age and sex groups. Finally, identifying potentially available sources of environmental Pb may be key to minimizing this apparently persistent threat to mottled ducks on the upper Texas coast.

Journal of the Southeastern Association of Fish an↗

Exposure of delta smelt to dissolved pesticides in 1998 and 1999

Delta smelt is a threatened species in the San Francisco Bay Estuary. Pesticide toxicity is a possible cause for the need to list this fish (Bennett and Moyle 1996; Moyle and others 1996). Numerous pesticides are transported into the estuary from area rivers (MacCoy and others 1995). However, there are minimal data to document the presence, or absence, of pesticides within delta smelt habitat, especially during their vulnerable early life stages. This study, conducted by the U.S. Geological Survey (USGS), documents the occurrence of pesticides within delta smelt habitat; specifically, the length and variability of their potential exposure to multiple dissolved pesticides. This article reviews delta smelt habitat and early life stages followed by an explanation of the study design for assessing pesticide exposure. Results show the co-occurrence of multiple pesticides and delta smelt in their native habitat; these results are presented within the context of possible toxic effects to delta smelt. Finally, the annual variability of pesticide distributions is discussed.

Interagency Ecological Program Newsletter↗

Mottled duck (Anas fulvigula) movements in the Texas Chenier Plain Region

As a surrogate species for Strategic Habitat Conservation, the mottled duck (Anas fulgivula) is an indicator species to coastal marsh health and function. Currently, biologists have a relatively poor understanding of regional mottled duck movements. We outfitted adult female mottled ducks with solar satellite transmitters during summer 2009–2011. Movement patterns were measured among years and phenology, in relation to available habitat at the landscape level, and in association to potential disturbance. Movement distances were measured in ArcGIS and then evaluated using analysis of variance for independent variables of year, month, biological time period, and season. Average weekly distances traveled by mottled ducks were relatively short (<5,000m) compared to other waterfowl. Movement occurrence and distance were linked to biological season with longest distances documented during the molt period. Movements also differed among years, with drought conditions associated with longer movement distances. Magnitude of movements may be an indicator of habitat quality for mottled ducks in the Texas Chenier Plain Region. By focusing on providing large freshwater pools and fresh/intermediate marsh during the molt period, managers could positively impact mottled ducks.

Texas↗