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At least 559 records · Page 31Linked to original sources
USGS2010

The onset of metamorphism in ordinary and carbonaceous chondrites

Ordinary and carbonaceous chondrites of the lowest petrologic types were surveyed by X-ray mapping techniques. A variety of metamorphic effects were noted and subjected to detailed analysis using electron microprobe, scanning electron microscopy (SEM), transmission electron microscopy (TEM), and cathodoluminescence (CL) methods. The distribution of Cr in FeO-rich olivine systematically changes as metamorphism increases between type 3.0 and type 3.2. Igneous zoning patterns are replaced by complex ones and Cr-rich coatings develop on all grains. Cr distributions in olivine are controlled by the exsolution of a Cr-rich phase, probably chromite. Cr in olivine may have been partly present as tetrahedrally coordinated Cr 3+ . Separation of chromite is nearly complete by petrologic type 3.2. The abundance of chondrules showing an inhomogeneous distribution of alkalis in mesostasis also increases with petrologic type. TEM shows this to be the result of crystallization of albite. Residual glass compositions systematically change during metamorphism, becoming increasingly rich in K. Glass in type I chondrules also gains alkalis during metamorphism. Both types of chondrules were open to an exchange of alkalis with opaque matrix and other chondrules. The matrix in the least metamorphosed chondrites is rich in S and Na. The S is lost from the matrix at the earliest stages of metamorphism due to coalescence of minute grains. Progressive heating also results in the loss of sulfides from chondrule rims and increases sulfide abundances in coarse matrix assemblages as well as inside chondrules. Alkalis initially leave the matrix and enter chondrules during early metamorphism. Feldspar subsequently nucleates in the matrix and Na re-enters from chondrules. These metamorphic trends can be used to refine classification schemes for chondrites. Cr distributions in olivine are a highly effective tool for assigning petrologic types to the most primitive meteorites and can be used to subdivide types 3.0 and 3.1 into types 3.00 through 3.15. On this basis, the most primitive ordinary chondrite known is Semarkona, although even this meteorite has experienced a small amount of metamorphism. Allan Hills (ALH) A77307 is the least metamorphosed CO chondrite and shares many properties with the ungrouped carbonaceous chondrite Acfer 094. Analytical problems are significant for glasses in type II chondrules, as Na is easily lost during microprobe analysis. As a result, existing schemes for chondrule classification that are based on the alkali content of glasses need to be revised.

Meteoritics and Planetary Science↗
USGS2024

Deformation-induced graphitization and muscovite recrystallization in a ductile fault zone

A suite of slate samples collected along a 2 km transect crossing the Lishan fault in central Taiwan were evaluated to assess the role of ductile deformation in natural graphitization at lower greenschist facies metamorphic conditions. The process of natural aromatization, or graphitization, of an organic precursor is well established as a thermally driven process; however, experimental studies have shown that the energy provided by deformation can substantially reduce the activation energy required for graphitization. This study provides a natural example of deformation-induced graphitization. A strain gradient approaching the Lishan fault was established by scanning electron microscope imaging and X-ray diffraction analysis of phyllosilicates and quartz that showed an increase in the strength of slaty cleavage development via dissolution-precipitation processes. Thermal conditions were constrained to be near isothermal using calcite-dolomite geothermometry. Raman spectroscopic results from carbonaceous material, including D1-full width-at-half-maximum (FWHM), G-FWHM, Raman band separation (RBS), and a lesser-known vibrational mode B 2g -FWHM, showed robust linear trends across the same sampling transect. However, the G-FWHM parameter showed a trend opposite of that expected from thermally driven graphitization. The Raman results are interpreted to reflect a strain-driven reduction in graphite crystallite size (decrease in G-FWHM) but improvement in structural ordering in individual coherent domains. A multiple linear regression with an R 2 value of 0.92 predicts the graphite D1-FWHM values from the XRD-derived ratio of muscovite populations and muscovite microstrain, demonstrating the concomitant recrystallization of silicates and carbonaceous material across the strain gradient, despite the disparate processes accommodating the deformation. This study demonstrates the role of deformation in natural graphitization and provides a new perspective on the use of graphite as a geothermometer in strongly deformed greenschist facies rocks.

Journal of Metamorphic Geology↗
USGS2017

Utilization of integrated correlative light and electron microscopy (iCLEM) for imaging sedimentary organic matter

We report here a new microscopic technique for imaging and identifying sedimentary organic matter in geologic materials that combines inverted fluorescence microscopy with scanning electron microscopy and allows for sequential imaging of the same region of interest without transferring the sample between instruments. This integrated correlative light and electron microscopy technique is demonstrated with observations from an immature lacustrine oil shale from the Eocene Green River Mahogany Zone and mid‐oil window paralic shale from the Upper Cretaceous Tuscaloosa Group. This technique has the potential to allow for identification and characterization of organic matter in shale hydrocarbon reservoirs that is not possible using either light or electron microscopy alone, and may be applied to understanding the organic matter type and thermal regime in which organic nanoporosity forms, thereby reducing uncertainty in the estimation of undiscovered hydrocarbon resources.

Journal of Microscopy↗
USGS2014

Anatomy of the lamprey ear: morphological evidence for occurrence of horizontal semicircular ducts in the labyrinth of Petromyzon marinus

In jawed (gnathostome) vertebrates, the inner ears have three semicircular canals arranged orthogonally in the three Cartesian planes: one horizontal (lateral) and two vertical canals. They function as detectors for angular acceleration in their respective planes. Living jawless craniates, cyclostomes (hagfish and lamprey) and their fossil records seemingly lack a lateral horizontal canal. The jawless vertebrate hagfish inner ear is described as a torus or doughnut, having one vertical canal, and the jawless vertebrate lamprey having two. These observations on the anatomy of the cyclostome (jawless vertebrate) inner ear have been unchallenged for over a century, and the question of how these jawless vertebrates perceive angular acceleration in the yaw (horizontal) planes has remained open. To provide an answer to this open question we reevaluated the anatomy of the inner ear in the lamprey, using stereoscopic dissection and scanning electron microscopy. The present study reveals a novel observation: the lamprey has two horizontal semicircular ducts in each labyrinth. Furthermore, the horizontal ducts in the lamprey, in contrast to those of jawed vertebrates, are located on the medial surface in the labyrinth rather than on the lateral surface. Our data on the lamprey horizontal duct suggest that the appearance of the horizontal canal characteristic of gnathostomes (lateral) and lampreys (medial) are mutually exclusive and indicate a parallel evolution of both systems, one in cyclostomes and one in gnathostome ancestors.

Journal of Anatomy↗
USGS2016

Coesite in suevites from the Chesapeake Bay impact structure

The occurrence of coesite in suevites from the Chesapeake Bay impact structure is confirmed within a variety of textural domains in situ by Raman spectroscopy for the first time and in mechanically separated grains by X-ray diffraction. Microtextures of coesite identified in situ investigated under transmitted light and by scanning electron microscope reveal coesite as micrometer-sized grains (1–3 μm) within amorphous silica of impact-melt clasts and as submicrometer-sized grains and polycrystalline aggregates within shocked quartz grains. Coesite-bearing quartz grains are present both idiomorphically with original grain margins intact and as highly strained grains that underwent shock-produced plastic deformation. Coesite commonly occurs in plastically deformed quartz grains within domains that appear brown (toasted) in transmitted light and rarely within quartz of spheroidal texture. The coesite likely developed by a mechanism of solid-state transformation from precursor quartz. Raman spectroscopy also showed a series of unidentified peaks associated with shocked quartz grains that likely represent unidentified silica phases, possibly including a moganite-like phase that has not previously been associated with coesite.

Chesapeake Bay↗
USGS2017

Screening of duplicated loci reveals hidden divergence patterns in a complex salmonid genome

A whole-genome duplication (WGD) doubles the entire genomic content of a species and is thought to have catalysed adaptive radiation in some polyploid-origin lineages. However, little is known about general consequences of a WGD because gene duplicates (i.e., paralogs) are commonly filtered in genomic studies; such filtering may remove substantial portions of the genome in data sets from polyploid-origin species. We demonstrate a new method that enables genome-wide scans for signatures of selection at both nonduplicated and duplicated loci by taking locus-specific copy number into account. We apply this method to RAD sequence data from different ecotypes of a polyploid-origin salmonid ( Oncorhynchus nerka ) and reveal signatures of divergent selection that would have been missed if duplicated loci were filtered. We also find conserved signatures of elevated divergence at pairs of homeologous chromosomes with residual tetrasomic inheritance, suggesting that joint evolution of some nondiverged gene duplicates may affect the adaptive potential of these genes. These findings illustrate that including duplicated loci in genomic analyses enables novel insights into the evolutionary consequences of WGDs and local segmental gene duplications.

Molecular Ecology↗
USGS2018

Adaptive population divergence and directional gene flow across steep elevational gradients in a climate‐sensitive mammal

The American pika is a thermally sensitive, alpine lagomorph species. Recent climate-associated population extirpations and genetic signatures of reduced population sizes range-wide indicate the viability of this species is sensitive to climate change. To test for potential adaptive responses to climate stress, we sampled pikas along two elevational gradients (each ~470 to 1640 m) and employed three outlier detection methods, BAYESCAN, LFMM, and BAYPASS, to scan for genotype-environment associations in samples genotyped at 30,763 SNP loci. We resolved 173 loci with robust evidence of natural selection detected by either two independent analyses or replicated in both transects. A BLASTN search of these outlier loci revealed several genes associated with metabolic function and oxygen transport, indicating natural selection from thermal stress and hypoxia. We also found evidence of directional gene flow primarily downslope from large high-elevation populations and reduced gene flow at outlier loci, a pattern suggesting potential impediments to the upward elevational movement of adaptive alleles in response to contemporary climate change. Finally, we documented evidence of reduced genetic diversity associated the south-facing transect and an increase in corticosterone stress levels associated with inbreeding. This study suggests the American pika is already undergoing climate-associated natural selection at multiple genomic regions. Further analysis is needed to determine if the rate of climate adaptation in the American pika and other thermally sensitive species will be able to keep pace with rapidly changing climate conditions.

Washington↗
USGS2021

Harnessing landscape genomics to identify future climate resilient genotypes in a desert annual

Local adaptation features critically in shaping species responses to changing environments, complicating efforts to revegetate degraded areas. Rapid climate change poses an additional challenge that could reduce fitness of even locally sourced seeds in restoration. Predictive restoration strategies that apply seeds with favourable adaptations to future climate may promote long‐term resilience. Landscape genomics is increasingly used to assess spatial patterns in local adaption and may represent a cost‐efficient approach for identifying future‐adapted genotypes. To demonstrate such an approach, we genotyped 760 plants from 64 Mojave Desert populations of the desert annual Plantago ovata . Genome scans on 5,960 SNPs identified 184 potentially adaptive loci related to climate and satellite vegetation metrics. Causal modelling indicated that variation in potentially adaptive loci was not confounded by isolation by distance or isolation by habitat resistance. A generalized dissimilarity model (GDM) attributed spatial turnover in potentially adaptive loci to temperature, precipitation and NDVI amplitude, a measure of vegetation green‐up potential. By integrating a species distribution model (SDM), we find evidence that summer maximum temperature may both constrain the range of P. ovata and drive adaptive divergence in populations exposed to higher temperatures. Within the species’ current range, warm‐adapted genotypes are predicted to experience a fivefold expansion in climate niche by midcentury and could harbour key adaptations to cope with future climate. We recommend eight seed transfer zones and project each zone into its relative position in future climate. Prioritizing seed collection efforts on genotypes with expanding future habitat represents a promising strategy for restoration practitioners to address rapidly changing climates.

California, Nevada↗
USGS2013

Distal border fragments of the equine navicular bone: association between magnetic resonance imaging characteristics and clinical lameness

Distal border fragments of the navicular bone are increasingly being detected due to the improved capabilities of magnetic resonance imaging (MRI), but their clinical significance remains unclear. The purpose of this retrospective study was to describe the location, size, and frequency of fragments in a cohort of horses presented for MRI of the foot and to compare MRI findings with severity of lameness. Archived MRI studies and medical records were searched from March 2006 to June 2008. Horses were included if a distal border fragment of the navicular bone was visible in MRI scans. Confidence interval comparisons and linear regression analyses were used to test hypotheses that fragments were associated with lameness and lameness severity was positively correlated with fragment volume and biaxial location. A total of 453 horses (874 limbs) were included. Fragments were identified in 60 horses (13.25%) and 90 limbs (10.3%). Fifty percent of the horses had unilateral fragments and 50% had bilateral fragments. Fragments were located at the lateral (62.2%), medial (8.89%), or medial and lateral (28.9%) angles of the distal border of the navicular bone. There was no increased probability of being categorized as lame if a fragment was present. There was no significant difference in fragment volume across lameness severity categorizations. Confidence intervals indicated a slightly increased probability of being classified as lame if both medial and lateral fragments were present. Findings indicated that distal border fragments of the navicular bone in equine MRI studies are unlikely to be related to existing lameness.

Veterinary Radiology & Ultrasound↗
USGS2002

Initial lunar calibration observations by the EO-1 Hyperion imaging spectrometer

The Moon provides an exo-atmospheric radiance source that can be used to determine trends in instrument radio-metric responsivity with high precision. Lunar observations can also be used for absolute radiometric calibration; knowledge of the radiometric scale will steadily improve through independent study of lunar spectral photometry and with sharing of the Moon as a calibration target by increasing numbers of spacecraft, each with its own calibration history. EO-1 calibration includes periodic observation of the Moon by all three of its instruments. Observations are normally made with a phase angle of about 7 degrees (or about 12 hours from the time of Full Moon). Also, SeaWiFS has been making observations at such phase angles for several years, and observations of the Moon by instrument pairs, even if at different times, can be used to transfer absolute calibration. A challenge for EO-1 is pointing to include the entire full Moon in the narrow Hyperion scan. Three Hyperion observations in early 2001 covering an order-of-magnitude difference in lunar irradiance show good agreement for responsivity; the SWIR detector has undergone some changes in responsivity. Small discrepancies of calibration with wavelength could be smoothed using the Moon as a source. Off-axis scattered light response and cross-track response variations can be assessed using the lunar image.

Conference Paper↗
USGS2005

SLC-off Landsat-7 ETM+ reflective band radiometric calibration

Since May 31, 2003, when the scan line corrector (SLC) on the Landsat-7 ETM+ failed, the primary foci of Landsat-7 ETM+ analyses have been on understanding and attempting to fix the problem and later on developing composited products to mitigate the problem. In the meantime, the Image Assessment System personnel and vicarious calibration teams have continued to monitor the radiometric performance of the ETM+ reflective bands. The SLC failure produced no measurable change in the radiometric calibration of the ETM+ bands. No trends in the calibration are definitively present over the mission lifetime, and, if present, are less than 0.5% per year. Detector 12 in Band 7 dropped about 0.5% in response relative to the rest of the detectors in the band in May 2004 and recovered back to within 0.1% of its initial relative gain in October 2004.

Conference Paper↗
USGS2008

MODIS and SeaWIFS on-orbit lunar calibration

The Moon plays an important role in the radiometric stability monitoring of the NASA Earth Observing System's (EOS) remote sensors. The MODIS and SeaWIFS are two of the key instruments for NASA's EOS missions. The MODIS Protoflight Model (PFM) on-board the Terra spacecraft and the MODIS Flight Model 1 (FM1) on-board the Aqua spacecraft were launched on December 18, 1999 and May 4, 2002, respectively. They view the Moon through the Space View (SV) port approximately once a month to monitor the long-term radiometric stability of their Reflective Solar Bands (RSB). SeaWIFS was launched on-board the OrbView-2 spacecraft on August 1, 1997. The SeaWiFS lunar calibrations are obtained once a month at a nominal phase angle of 7??. The lunar irradiance observed by these instruments depends on the viewing geometry. The USGS photometric model of the Moon (the ROLO model) has been developed to provide the geometric corrections for the lunar observations. For MODIS, the lunar view responses with corrections for the viewing geometry are used to track the gain change for its reflective solar bands (RSB). They trend the system response degradation at the Angle Of Incidence (AOI) of sensor's SV port. With both the lunar observation and the on-board Solar Diffuser (SD) calibration, it is shown that the MODIS system response degradation is wavelength, mirror side, and AOI dependent. Time-dependent Response Versus Scan angle (RVS) Look-Up Tables (LUT) are applied in MODIS RSB calibration and lunar observations play a key role in RVS derivation. The corrections provided by the RVS in the Terra and Aqua MODIS data from the 412 nm band are as large as 16% and 13%, respectively. For SeaWIFS lunar calibrations, the spacecraft is pitched across the Moon so that the instrument views the Moon near nadir through the same optical path as it views the Earth. The SeaWiFS system gain changes for its eight bands are calibrated using the geometrically-corrected lunar observations. The radiometric corrections to the SeaWiFS data, after more than ten years on orbit, are 19% at 865 nm, 8% at 765 nm, and 1-3% in the other bands. In this report, the lunar calibration algorithms are reviewed and the RSB gain changes observed by the lunar observations are shown for all three sensors. The lunar observations for the three instruments are compared using the USGS photometric model. The USGS lunar model facilitates the cross calibration of instruments with different spectra bandpasses whose measurements of the Moon differ in time and observing geometry.

Conference Paper↗
USGS2017

Buried shallow fault slip from the South Napa earthquake revealed by near-field geodesy

Earthquake-related fault slip in the upper hundreds of meters of Earth’s surface has remained largely unstudied because of challenges measuring deformation in the near field of a fault rupture. We analyze centimeter-scale accuracy mobile laser scanning (MLS) data of deformed vine rows within ±300 m of the principal surface expression of the M (magnitude) 6.0 2014 South Napa earthquake. Rather than assuming surface displacement equivalence to fault slip, we invert the near-field data with a model that allows for, but does not require, the fault to be buried below the surface. The inversion maps the position on a preexisting fault plane of a slip front that terminates ~3 to 25 m below the surface coseismically and within a few hours postseismically. The lack of surface-breaching fault slip is verified by two trenches. We estimate near-surface slip ranging from ~0.5 to 1.25 m. Surface displacement can underestimate fault slip by as much as 30%. This implies that similar biases could be present in short-term geologic slip rates used in seismic hazard analyses. Along strike and downdip, we find deficits in slip: The along-strike deficit is erased after ~1 month by afterslip. We find no evidence of off-fault deformation and conclude that the downdip shallow slip deficit for this event is likely an artifact. As near-field geodetic data rapidly proliferate and will become commonplace, we suggest that analyses of near-surface fault rupture should also use more sophisticated mechanical models and subsurface geomechanical tests.

California↗
USGS2006

Grain size-sensitive creep in ice II

Rheological experiments on fine-grained water ice II at low strain rates reveal a creep mechanism that dominates at conditions of low stress. Using cryogenic scanning electron microscopy, we observed that a change in stress exponent from 5 to 2.5 correlates strongly with a decrease in grain size from about 40 to 6 micrometers. The grain size-sensitive creep of ice II demonstrated here plausibly dominates plastic strain at the low-stress conditions in the interior of medium- to large-sized icy moons of the outer solar system.

Science↗
USGS1983

Norwegian remote sensing experiment in a marginal ice zone

The Norwegian Remote Sensing Experiment in the marginal ice zone north of Svalbard took place in fall 1979. Coordinated passive and active microwave measurements were obtained from shipborne, airborne, and satellite instruments together with in situ observations. The obtained spectra of emissivity (frequency range, 5 to 100 gigahertz) should improve identification of ice types and estimates of ice concentration. Mesoscale features along the ice edge were revealed by a 1.215-gigahertz synthetic aperture radar. Ice edge location by the Nimbus 7 scanning multichannel microwave radiometer was shown to be accurate to within 10 kilometers.

Svalbard↗
USGS1981

Sedimentary framework of the Potomac River estuary, Maryland

Analyses of seismic-reflection profiles, sediment cores, grab samples, and side-scan sonar records, along with previously collected borehole data, reveal the characteristics, distribution, and geologic history of the shallow strata beneath the Potomac River estuary. The lowermost strata are sediments of the Chesapeake Group (lower Miocene to lower Pleistocene) that crop out on land near the shore but are buried as much as 40 m below the floor of the estuary. The top of these sediments is an erosional unconformity that outlines the Wisconsinan valley of the Potomac River. This valley has a sinuous trend, a flat bottom, a relief of 15 to 34 m, and axial depths of 34 to 54 m below present sea level. During the Holocene transgression of sea level, the ancestral valley was filled with as much as 40 m of sandy and silty, fluvial-to-shallow estuarine sediments. The fill became the substrate for oyster bars in the upper reach and now forms most marginal slopes of the estuary. Since sea level approached its present position (2,000 to 3,000 yr ago), the main channel has become the locus of deposition for watery, gray to black clay or silty clay, and waves and currents have eroded the heterogeneous Quaternary sediments along the margins, leaving winnowed brown sand on shallow shoreline flats. Pb-210 analyses indicate that modern mud is accumulating at rates ranging from 0.16 to 1.80 cm/yr, being lowest near the mouth and increasing toward the head of the estuary. This trend reflects an increased accumulation of fine-grained fluvial sediments near the turbidity maximum, similar to that found in nearby Chesapeake Bay. The present annual accumulation of mud is about 1.54 million metric tons; the cumulative mass is 406 million metric tons.

Maryl↗
USGS1991

Submarine processes of the middle Atlantic continental rise based on GLORIA imagery

Approximately 6100 km of 3.5-kHz echo-sounding profiles was correlated with a GLORIA side-scan sonar image of the mid-Atlantic United States (34??N, 70??W) lower slope-upper continental rise. The image allows us to map the major erosional and depositional features and to identify major processes that have shaped the area. Interpretation of GLORIA imagery and echo-sounding profiles indicates that mass movement is the predominant process affecting sediment on the United States east coast mid-Atlantic slope and upper rise and that isobath-parallel sediment movement by geostrophic currents is restricted mainly to the lower continental rise. The mass-movement processes evident on the rise probably were most active during the Pleistocene, when sea level was lower and sediment input more active. -from Authors

Geological Society of America Bulletin↗
USGS1979

Endolith microborings and their preservation in Holocene-Pleistocene (Bahama-Florida) ooids

Holocene ooids from Joulters Ooid Shoal (Bahamas) are bored in various ways by blue-green algae that groove along the grain surface, reside just beneath the grain surface, and tunnel extensively a few tens of microns within the grain. The microborings, morphologically distinctive, are documented with scanning electron micrographs of open borings and resin casts. Gentle dissolution of ooid aragonite permits identification of several algal genera by light microscopy and enables comparison with the microboring casts. Pleistocene ooids from the Miami Limestone (Florida) contain natural casts of microborings, some of which are similar in form to Holocene examples. Significantly, these aragonite casts are more resistant to solution than surrounding ooid aragonite. They remain after most of the ooid is leached away and survive replacement of the ooid by low-Mg calcite. Dissolution or precipitation may occur along the walls of microborings, causing morphological alteration during their preservation. This points out a difficulty in the specific identification of endoliths on the basis of fossilized microborings in ancient rocks composed of original aragonite grains.

Florida↗