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At least 559 records · Page 31Linked to original sources
USGS2023

The Landscape Data Commons: A system for standardizing, accessing, and applying large environmental datasets for agroecosystem research and management

Understanding where, when, and why agroecosystems are changing requires quality information about ecosystems that span land tenure, ecological processes, and spatial scales. Over the past two decades, land management agencies and research groups have adopted a suite of standardized methods for monitoring rangelands, which have been implemented at over 85,000 monitoring locations globally. However, the ability to use these data to understand agroecosystem dynamics and change across scales and across land ownership has been limited because, until now, these data have not been available in a harmonized, accessible format for analyses, modeling, and decision-support tools. We present the Landscape Data Commons, a cyberinfrastructure platform that harmonizes and aggregates standardized agroecosystem data, enables linkages to models, and facilitates analysis and interpretation of data within decision-support tools. The Landscape Data Commons provides a community platform for users to contribute data and develop next-generation tools to support agroecosystem management through the 21st century.

Agricultural & Environmental Letters↗
USGS2024

Co-mast: Harmonized seed production data for woody plants across US long-term research sites

Plants display a range of temporal patterns of inter-annual reproduction, from relatively constant seed production to “mast seeding,” the synchronized and highly variable interannual seed production of plants within a population. Previous efforts have compiled global records of seed production in long-lived plants to gain insight into seed production, forest and animal population dynamics, and the effects of global change on masting. Existing datasets focus on seed production dynamics at the population scale but are limited in their ability to examine community-level mast seeding dynamics across different plant species at the continental scale. We harmonized decades of plant reproduction data for 141 woody plant species across nine Long-Term Ecological Research (LTER) or long-term ecological monitoring sites from a wide range of habitats across the United States. Plant reproduction data are reported annually between 1957 and 2021 and based on either seed traps or seed and/or cone counts on individual trees. A wide range of woody plant species including trees, shrubs, and lianas are represented within sites allowing for direct community-level comparisons among species. We share code for filtering of data that enables the comparison of plot and individual tree data across sites. For each species, we compiled relevant life history attributes (e.g., seed mass, dispersal syndrome, seed longevity, sexual system) that may serve as important predictors of mast seeding in future analyses. To aid in phylogenetically informed analyses, we also share a phylogeny and phylogenetic distance matrix for all species in the dataset. These data can be used to investigate continent-scale ecological properties of seed production, including individual and population variability, synchrony within and across species, and how these properties of seed production vary in relation to plant species traits and environmental conditions. In addition, these data can be used to assess how annual variability in seed production is associated with climate conditions and how that varies across populations, species, and regions. The dataset is released under a CC0 1.0 Universal public domain license.

Ecology↗
USGS2019

Ethical guidelines for publication of fisheries research

In 2000, the Governing Board of the American Fisheries Society (AFS) approved the first Guidelines for Authorship (GFA) in AFS publications, developed by the AFS Publications Overview Committee (POC) chaired by Mary Fabrizio. This version of the GFA document provided guidance for fisheries science publications for nearly two decades. The 2015 AFS President Donna Parish charged the POC to revise the document to improve the quality of AFS publications. With guidance from Mary Fabrizio and the AFS staff, the POC and chair Emmanuel Frimpong revised, updated, and clarified the GFA document. This revised fisheries research publication document provides guidance for all persons involved in the publication process including authors, reviewers, and editors. This version of the GFA document is not a guide for style or content in AFS publications, but rather provides substantial changes including clarification on what constitutes authorship versus acknowledgment and determining authorship order, including deceased authors. This version was adopted by the AFS Governing Board and is presented verbatim as it appears in the AFS Procedures Manual.

Fisheries↗
USGS2021

The evolving perceptual model of streamflow generation at the Panola Mountain Research Watershed

The Panola Mountain Research Watershed (PMRW) is a 41‐hectare forested catchment within the Piedmont Province of the Southeastern United States. Observations, experimentation, and numerical modelling have been conducted at Panola over the past 35 years. But to date, these studies have not been fully incorporated into a more comprehensive synthesis. Here we describe the evolving perceptual understanding of streamflow generation mechanisms at the PMRW. We show how the long‐term study has enabled insights that were initially unforeseen but are also unachievable in short‐term studies. In particular, we discuss how the accumulation of field evidence, detailed site characterization, and modelling enabled a priori hypotheses to be formed, later rejected, and then further refined through repeated field campaigns. The extensive characterization of the soil and bedrock provided robust process insights not otherwise achievable from hydrometric measurements and numerical modelling alone. We focus on two major aspects of streamflow generation: the role of hillslopes (and their connection to the riparian zone) and the role of catchment storage in controlling fluxes and transit times of water in the catchment. Finally, we present location‐independent hypotheses based on our findings at PMRW and suggest ways to assess the representativeness of PMRW in the broader context of headwater watersheds.

Georgia↗
USGS2008

Advancing process‐based watershed hydrological research using near‐surface geophysics: A vision for, and review of, electrical and magnetic geophysical methods

We want to develop a dialogue between geophysicists and hydrologists interested in synergistically advancing process based watershed research. We identify recent advances in geophysical instrumentation, and provide a vision for the use of electrical and magnetic geophysical instrumentation in watershed scale hydrology. The focus of the paper is to identify instrumentation that could significantly advance this vision for geophysics and hydrology during the next 3–5 years. We acknowledge that this is one of a number of possible ways forward and seek only to offer a relatively narrow and achievable vision. The vision focuses on the measurement of geological structure and identification of flow paths using electrical and magnetic methods. The paper identifies instruments, provides examples of their use, and describes how synergy between measurement and modelling could be achieved. Of specific interest are the airborne systems that can cover large areas and are appropriate for watershed studies. Although airborne geophysics has been around for some time, only in the last few years have systems designed exclusively for hydrological applications begun to emerge. These systems, such as airborne electromagnetic (EM) and transient electromagnetic (TEM), could revolutionize hydrogeological interpretations. Our vision centers on developing nested and cross scale electrical and magnetic measurements that can be used to construct a three‐dimensional (3D) electrical or magnetic model of the subsurface in watersheds. The methodological framework assumes a ‘top down’ approach using airborne methods to identify the large scale, dominant architecture of the subsurface. We recognize that the integration of geophysical measurement methods, and data, into watershed process characterization and modelling can only be achieved through dialogue. Especially, through the development of partnerships between geophysicists and hydrologists, partnerships that explore how the application of geophysics can answer critical hydrological science questions, and conversely provide an understanding of the limitations of geophysical measurements and interpretation.

Hydrological Processes↗
USGS2019

Scientific integrity issues in environmental toxicology and chemistry: Improving research transparency, reproducibility, and credibility

High‐profile reports of detrimental scientific practices leading to retractions in the scientific literature contribute to lack of trust in scientific experts. Although the bulk of these have been in the literature of other disciplines, environmental toxicology and chemistry are not free from problems. While we believe that egregious misconduct such as fraud, fabrication of data, or plagiarism is rare, scientific integrity is much broader than the absence of misconduct. We are more concerned with more commonly encountered and nuanced issues such as poor reliability and bias. We review a range of topics including conflicts of interests, competing interests, some particularly challenging situations, reproducibility, bias, and other attributes of ecotoxicological studies that enhance or detract from scientific credibility. Our vision of scientific integrity encourages a self‐correcting culture that promotes scientific rigor, relevant reproducible research, transparency in competing interests, methods and results, and education.

Integrated Environmental Assessment and Management↗
USGS1965

Infrared photography and imagery in water resources research

This article briefly describes the characteristics of infrared radiation and demonstrates how infrared photography and infrared imagery can be applied to water resources research, specifically to the identification and description of hydrologic features.

Journal - American Water Works Association↗
USGS2016

Status and trends of dam removal research in the United States

Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called upon to inform decisions about whether, and how best, to bring down dams. This raises a critical question: what is the current state of dam-removal science in the United States? To explore the status, trends, and characteristics of dam-removal research in the U.S., we searched the scientific literature and extracted basic information from studies on dam removal. Our literature review illustrates that although over 1200 dams have been removed in the U.S., fewer than 10% have been scientifically evaluated, and most of these studies were short in duration ( < 4 years) and had limited (1–2 years) or no pre-removal monitoring. The majority of studies focused on hydrologic and geomorphic responses to removal rather than biological and water-quality responses, and few studies were published on linkages between physical and ecological components. Our review illustrates the need for long-term, multidisciplinary case studies, with robust study designs, in order to anticipate the effects of dam removal and inform future decision making.

WIREs Water↗
USGS2020

Sediment dynamics and implications for management: State of the science from long‐term research in the Chesapeake Bay watershed, USA

This review aims to synthesize the current knowledge of sediment dynamics using insights from long‐term research conducted in the watershed draining to the Chesapeake Bay, the largest estuary in the U.S., to inform management actions to restore the estuary and its watershed. The sediment dynamics of the Chesapeake are typical of many impaired watersheds and estuaries around the world, and this synthesis is intended to be relevant and transferable to other sediment‐impaired systems. The watershed's sediment sources, transport, delivery, and impacts are discussed with implications for effectively implementing best management practices (BMPs) to mitigate sediment issues. This synthesis revealed three key issues to consider when planning actions to reduce sediment loading: Scale, time, and land use. Geology and historical land use generated a template that current land use and climate, in addition to management, are acting upon to control sediment delivery. Important sediment sources in the Chesapeake include the Piedmont physiographic region, urban, and agricultural land use, and streambank erosion of headwater streams, whereas floodplain trapping is important along larger streams and rivers. Implementation of BMPs is widespread and is predicted to lead to decreased sediment loading; however, reworking of legacy sediment stored in stream valleys, with potentially long residence times in storage, can delay and complicate detection of the effects of BMPs on sediment loads. In conclusion, the improved understanding of sediment sources, storage areas, and transport lag times reviewed here can help target choices of BMP types and locations to better manage sediment problems—for both local streams and receiving waters.

New York, Pennsylvania, Maryland, Delaware, Virgin↗
USGS2012

Archive eggs: a research and management tool for avian conservation breeding

Worldwide, approximately 168 bird species are captive-bred for reintroduction into the wild. Programs tend to be initiated for species with a high level of endangerment. Depressed hatching success can be a problem for such programs and has been linked to artificial incubation. The need for artificial incubation is driven by the practice of multiclutching to increase egg production or by uncertainty over the incubation abilities of captive birds. There has been little attempt to determine how artificial incubation differs from bird-contact incubation. We describe a novel archive (data-logger) egg and use it to compare temperature, humidity, and egg-turning in 5 whooping crane (Grus americana) nests, 4 sandhill crane (G. canadensis) nests, and 3 models of artificial incubator; each of which are used to incubate eggs in whooping crane captive-breeding programs. Mean incubation temperature was 31.7&deg; C for whooping cranes and 32.83&deg; C for sandhill cranes. This is well below that of the artificial incubators (which were set based on a protocol of 37.6&deg; C). Humidity in crane nests varied considerably, but median humidity in all 3 artificial incubators was substantially different from that in the crane nests. Two artificial incubators failed to turn the eggs in a way that mimicked crane egg-turning. Archive eggs are an effective tool for guiding the management of avian conservation breeding programs, and can be custom-made for other species. They also have potential to be applied to research on wild populations.

Wildlife Society Bulletin↗
USGS2020

Introduction to life cycles, taxonomy, distribution and basic research techniques

Avian haemosporidian parasites are a closely related group of apicomplexan parasites with important similarities in their life cycles, development, physiology, and reproduction. Current phylogenies based on mitochondrial and nuclear genes reflect more traditional attempts to classify these organisms based on life history characteristics and morphology, but limited sampling from poorly characterized taxa such as the Garniidae from tropical and subtropical regions continues to limit our understanding of their phylogeny and evolution. Recent advances in molecular diagnostics and the ability to barcode these parasites using mitochondrial cytochrome b sequences have revolutionized the field, but traditional methodology based on microscopy of Giemsa-stained blood smears remains essential for diagnostics and understanding life history characteristics and biodiversity of these organisms. The relative strengths and weaknesses of current methods in wildlife haemosporidian research are discussed. We call for a combination of microscopic, PCR-based, and serological diagnostic methodologies for better estimates of true distribution and other aspects of biology of haemosporidians, particularly in studies on virulence, prevalence, and biodiversity.

Book chapter↗
USGS1988

Cooperative federal-state liming research on surface waters impacted by acidic deposition

In the eastern and north-central United States, lakes and streams with low acid neutralizing capacity are at risk from acidity. Resource management agencies are interested in developing mitigation strategies that protect or restore fisheries in these waters. Addition of limestone (calcium carbonate) to improve water quality and prevent episodic depressions of pH during precipitation events and spring runoff is one mitigation technique being used. The ecological changes that accompany such treatment of streams and lakes are being investigated in a cooperative program between the U.S. Fish and Wildlife Service and individual states. Streams in Massachusetts, West Virginia and Tennessee, and a lake in Minnesota are included in this 5-yr research program. Intensive monitoring during pre- and post-liming tracks a suite of physical, chemical and biological parameters that influence the re-establishment or maintenance of healthy fisheries. Supporting studies on liming being conducted at Adirondack lakes in New York focus on fisheries management. A model on the influence of liming on light attenuation and thermal stratification is also being developed. Management guidelines are to be generated from the program results.

Massachusetts, Minnesota, Tennessee, West Virginia↗
USGS2019

Response to “Prepublication communication of research results”: The need for a coordinated wildlife disease surveillance laboratory network

In “Prepublication Communication of Research Results”, Adams et al. ( 2018 ) outline the importance of timeliness in providing scientific results with consequential implications for wildlife management to responsible government agencies. The authors discuss various impediments to sharing of scientific results and provide well-reasoned arguments why scientists should not fear that sharing these results with wildlife management agencies will preclude their ability to subsequently publish this information in the peer-reviewed literature.

EcoHealth↗
USGS2019

Assessing the impact of charr research past, present, and future

The 9th International Charr Symposium convened on 18–21 June 2018, in Duluth, Minnesota, USA to gather scientists with an interest in charr biology and management from the entire geographical range of the genus Salvelinus. The symposium was attended by 169 individuals from six countries, and included 99 oral and 32 poster presentations, 28 of which were published in the ensuing proceedings. Topic areas of presentations and publications included: (1) cultural anthropology; (2) genetics, evolution, taxonomy and systematics; (3) behavior, movement and habitat; (4) reproductive ecology, developmental ontogeny and physiology; (5) population ecology, dynamics and life history; (6) trophic ecology, parasites, predators, toxicology and pollution; and (7) management. Research reported in these proceedings has built upon the history of earlier symposiums and will be continued with the 10th symposium scheduled to convene in Nikko City, Tochigi Prefecture, Japan, in 2021.

Hydrobiologia↗
USGS2018

International Limnogeology Congress (ILIC6), Reno USA, special issue on new limnogeological research focused on Holocene lake systems

The 6th International Limnogeology Congress (ILIC6) of the International Association of Limnogeology (IAL) was held in Reno, Nevada, USA 15–19 June, 2015. The successful congress brought together a wide variety of academic, government, and industry participants from 20 countries and six continents. The highpoint of the four-day meeting were eight keynote addresses highlighting cutting-edge research in paleolimnology and limnogeology. These addresses were often the focal point of discussions throughout the congress. Among the topics covered in the more than 140 poster presentations included the use of biological proxies to identify paleoenvironmental change due to natural variability and human impact, the evolution of mineral formation in saline lakes, sedimentation deposition processes in Mesoproterozoic lakes, the role of groundwater in lacustrine hydrology, and organic and inorganic contaminant histories in modern lakes.

Conference Paper↗
USGS2005

A method for the use of landscape metrics in freshwater research and management

Freshwater research and management efforts could be greatly enhanced by a better understanding of the relationship between landscape-scale factors and water quality indicators. This is particularly true in urban areas, where land transformation impacts stream systems at a variety of scales. Despite advances in landscape quantification methods, several studies attempting to elucidate the relationship between land use/land cover (LULC) and water quality have resulted in mixed conclusions. However, these studies have largely relied on compositional landscape metrics. For urban and urbanizing watersheds in particular, the use of metrics that capture spatial pattern may further aid in distinguishing the effects of various urban growth patterns, as well as exploring the interplay between environmental and socioeconomic variables. However, to be truly useful for freshwater applications, pattern metrics must be optimized based on characteristic watershed properties and common water quality point sampling methods. Using a freely available LULC data set for the Santa Clara Basin, California, USA, we quantified landscape composition and configuration for subwatershed areas upstream of individual sampling sites, reducing the number of metrics based on: (1) sensitivity to changes in extent and (2) redundancy, as determined by a multivariate factor analysis. The first two factors, interpreted as (1) patch density and distribution and (2) patch shape and landscape subdivision, explained approximately 85% of the variation in the data set, and are highly reflective of the heterogeneous urban development pattern found in the study area. Although offering slightly less explanatory power, compositional metrics can provide important contextual information.

Landscape Ecology↗
USGS2017

A lake-centric geospatial database to guide research and inform management decisions in an Arctic watershed in northern Alaska experiencing climate and land-use changes

Lakes are dominant and diverse landscape features in the Arctic, but conventional land cover classification schemes typically map them as a single uniform class. Here, we present a detailed lake-centric geospatial database for an Arctic watershed in northern Alaska. We developed a GIS dataset consisting of 4362 lakes that provides information on lake morphometry, hydrologic connectivity, surface area dynamics, surrounding terrestrial ecotypes, and other important conditions describing Arctic lakes. Analyzing the geospatial database relative to fish and bird survey data shows relations to lake depth and hydrologic connectivity, which are being used to guide research and aid in the management of aquatic resources in the National Petroleum Reserve in Alaska. Further development of similar geospatial databases is needed to better understand and plan for the impacts of ongoing climate and land-use changes occurring across lake-rich landscapes in the Arctic.

Ambio↗