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USGS2014

Sex-biased gene flow among elk in the greater Yellowstone ecosystem

We quantified patterns of population genetic structure to help understand gene flow among elk populations across the Greater Yellowstone Ecosystem. We sequenced 596 base pairs of the mitochondrial control region of 380 elk from eight populations. Analysis revealed high mitochondrial DNA variation within populations, averaging 13.0 haplotypes with high mean gene diversity (0.85). The genetic differentiation among populations for mitochondrial DNA was relatively high ( F ST = 0.161; P = 0.001) compared to genetic differentiation for nuclear microsatellite data ( F ST = 0.002; P = 0.332), which suggested relatively low female gene flow among populations. The estimated ratio of male to female gene flow ( m m / m f = 46) was among the highest we have seen reported for large mammals. Genetic distance (for mitochondrial DNA pairwise F ST ) was not significantly correlated with geographic (Euclidean) distance between populations (Mantel's r = 0.274, P = 0.168). Large mitochondrial DNA genetic distances (e.g., F ST > 0.2) between some of the geographically closest populations (<65 km) suggested behavioral factors and/or landscape features might shape female gene flow patterns. Given the strong sex-biased gene flow, future research and conservation efforts should consider the sexes separately when modeling corridors of gene flow or predicting spread of maternally transmitted diseases. The growing availability of genetic data to compare male vs. female gene flow provides many exciting opportunities to explore the magnitude, causes, and implications of sex-biased gene flow likely to occur in many species.

Yellowstone National Park↗

USGS2013

Winter climate change and coastal wetland foundation species: Salt marshes vs. mangrove forests in the southeastern United States

We live in an era of unprecedented ecological change in which ecologists and natural resource managers are increasingly challenged to anticipate and prepare for the ecological effects of future global change. In this study, we investigated the potential effect of winter climate change upon salt marsh and mangrove forest foundation species in the southeastern United States. Our research addresses the following three questions: (1) What is the relationship between winter climate and the presence and abundance of mangrove forests relative to salt marshes; (2) How vulnerable are salt marshes to winter climate change-induced mangrove forest range expansion; and (3) What is the potential future distribution and relative abundance of mangrove forests under alternative winter climate change scenarios? We developed simple winter climate-based models to predict mangrove forest distribution and relative abundance using observed winter temperature data (1970–2000) and mangrove forest and salt marsh habitat data. Our results identify winter climate thresholds for salt marsh–mangrove forest interactions and highlight coastal areas in the southeastern United States (e.g., Texas, Louisiana, and parts of Florida) where relatively small changes in the intensity and frequency of extreme winter events could cause relatively dramatic landscape-scale ecosystem structural and functional change in the form of poleward mangrove forest migration and salt marsh displacement. The ecological implications of these marsh-to-mangrove forest conversions are poorly understood, but would likely include changes for associated fish and wildlife populations and for the supply of some ecosystem goods and services.

Global Change Biology↗

USGS2007

Investigation of wind and water level for the Giacomini Wetland Restoration Project, Point Reyes National Seashore

Point Reyes National Seashore (PRNS), comprising unique elements of geological, biological, and historical interest, is located on the central California coast approximately 60 km northwest of San Francisco. The National Seashore contains nearly 130 km of exposed and protected shorelines, spectacular coastal cliffs and headlands, lagoons, open grasslands, bushy hillsides, and forested ridges. Approximately 30 km of the shoreline are coastal-dune habitat that supports 11 federally listed species, including the threatened western snowy plover and the endangered plants Tidestrom's lupine ( Lupinus tidestromii ) and beach layia ( Layia carnosa ). The San Andreas Fault, a right-lateral strike-slip fault, trends northwest along the northeastern side of the park. Tomales Bay, which is straight, long, narrow, and shallow, runs along the northeastern boundary of PRNS. The Bay, which fills the northwestern end of a rift valley at the intersection of the San Andreas Fault with the coastline, is approximately 20 km long, 2 km wide, and 6 m deep with mountainous terrain to the southwest and rolling hills to the northeast. Tomales Bay is one of the cleanest estuaries on the West Coast. In winter, approximately 17,000 to 20,000 shorebirds inhabit Tomales Bay and Bodega Bay, which lies directly to the north. At the head of Tomales Bay, the Giacomini Ranch comprises 563 acres of pastureland currently being used for grazing dairy cattle. After more than 50 years of operation as a dairy, the National Park Service acquired the Giacomini property with the intention to restore most of it and the nearby Olema Marsh to tidal wetland. Restoration will add approximately 4% to the existing coastal wetlands in California. The project will return the headwaters of Tomales Bay and two major stream intersections to an intertidal marsh environment, enhancing habitat for both wildlife and fish populations and contributing to the long-term health of Tomales Bay. Prior to the establishment of the ranch, the area was primarily salt marsh that formed as the delta of Lagunitas Creek expanded into Tomales Bay. In converting the salt marsh to dairy land, levees and tide gates were constructed to prevent tidal incursion and stream flooding. Those levees have significantly altered the patterns of estuarine circulation and sediment deposition. To restore natural hydrologic processes within the area and to promote the return of ecological functions and processes, the levees will have to be breached or removed. Developing a successful restoration strategy requires knowledge of elevations within the pastureland and the range of water depths that can be expected from tidal, river, and wind action. In support of the restoration program, the USGS provides technical assistance to PRNS in the form of a scientific study focusing on understanding the physical processes that could affect the Giacomini wetland restoration. The study will yield scientific products that NPS resource managers can use in designing and implementing the restoration project. Research elements include: - Develop a Geodetic Control Network (GCN) throughout PRNS that meets the standards specified National Geodetic Survey data base (the NGS "Bluebook"). The grid will allow this and future studies to be conducted to a precision commensurate with the expressed goals of PRNS. The survey will consist of three steps: (1) verify existing GPS control monuments in the area; (2) tie control monuments in the study areas to the GPS control monuments; and (3) establish NAVD88 elevations using a digital electronic level. - Conduct a detailed survey of the Giacomini site to produce an accurate topographic map of the property. The site survey can be coupled with on-site water-level measurements to produce an empirical flooding model. - Measure water level and wind regime at the Giacomini site. The water-level range is critical to determining the wetland types based on the elevation of the dairy land. Water level at Sacramento Landing, in central Tomales Bay, will also be measured for comparison. As of November 2005, we have created a GCN, produced a detailed topographic map of the Giacomini site, and collected approximately three years of water-level and wind data at the Giacomini site and over one year of usable water-level data at the Sacramento Landing pier.

California↗

USGS2019

Updates to the Madison Lake (Minnesota) CE–QUAL–W2 water-quality model for assessing algal community dynamics

A previously developed CE–QUAL–W2 model for Madison Lake, Minnesota, simulated the algal community dynamics, water quality, and fish habitat suitability of Madison Lake under recent (2014) meteorological conditions. Additionally, this previously developed model simulated the complex interplay between external nutrient loading, internal nutrient loading from sediment release of phosphorus, and the organic matter decomposition of the algal biomass. However, the partitioning of Cyanophyta within the modeling framework was simplified to one group and did not account for how different Cyanophyta populations are affected by light conditions, use of nitrogen, temperature growth ranges, and differences in settling rates. Properly capturing Cyanophyta dynamics is important given the potential risks posed by potential large algal blooms. For example, when Cyanophyta form large blooms, recreational activities can become restricted in certain areas because of thick algal scums or algal mats, in addition to the possible production of a class of toxins, known as cyanotoxins, capable of threatening human health, domestic animals, and wildlife. Therefore, we updated the model to partition the Cyanophyta into a group that fixed nitrogen and a second, more buoyant Cyanophyta group that did not independently fix nitrogen. The U.S. Geological Survey, in cooperation with the St. Croix Watershed Research Station (Science Museum of Minnesota) with support from the Environmental and Natural Resources Trust Fund of Minnesota (Legislative-Citizen Commission on Minnesota Resources), updated the Madison Lake CE–QUAL–W2 model to address the shortcomings of simulating Cyanophyta in the previously developed model and better characterize Cyanophyta into two groups. In addition to updating the Cyanophyta group differentiation, the part of the model that handles the simulation of algal community dynamics was updated while preserving model predictive capabilities for nutrients, water temperature, and dissolved oxygen. The calibration and validation of the model was done under recent meteorological conditions with large and persistent Cyanophyta blooms (2014 and 2016). Overall, the model simulations predicted the persistently large total phosphorus concentrations in the hypolimnion of Madison Lake and key differences in nutrient concentrations between 2014 and 2016. The Cyanophyta bloom persistence throughout the summer was also simulated by the model in 2014 and 2016, a critical goal of the model update. Finally, monthly total phosphorus budgets were calculated for the updated Madison Lake model for 2014 and 2016.

Minnesota↗

USGS2020

Ecological forecasting—21st century science for 21st century management

Natural resource managers are coping with rapid changes in both environmental conditions and ecosystems. Enabled by recent advances in data collection and assimilation, short-term ecological forecasting may be a powerful tool to help resource managers anticipate impending near-term changes in ecosystem conditions or dynamics. Managers may use the information in forecasts to minimize the adverse effects of ecological stressors and optimize the effectiveness of management actions. To explore the potential for ecological forecasting to enhance natural resource management, the U.S. Geological Survey (USGS) convened a workshop titled "Building Capacity for Applied Short-Term Ecological Forecasting" on May 29—31, 2019, with participants from several Federal agencies, including the Bureau of Land Management, the U.S. Fish and Wildlife Service, the National Park Service, and the National Oceanic and Atmospheric Administration as well as all mission areas within the USGS. Participants broadly agreed that short-term ecological forecasting—on the order of days to years into the future—has tremendous potential to improve the quality and timeliness of information available to guide resource management decisions. Participants considered how ecological forecasting could directly affect their agency missions and specified numerous critical tools for addressing natural resource management concerns in the 21st century that could be enhanced by ecological forecasting. Given this breadth of possible applications for forecast products, participants developed a repeatable framework for evaluating potential value of a forecast product for enhancing resource management. Applying that process to a large list of forecast ideas that were developed in a brainstorming session, participants identified a small set of promising forecast products that illustrate the value of ecological forecasting for informing resource management. Workshop outcomes also include insights about important likely obstacles and next steps. In particular, reliable production and delivery of operational ecological forecasts will require a sustained commitment by research agencies, in partnership with resource management agencies, to maintain and improve forecasting tools and capabilities.

Open-File Report↗

USGS2017

Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission

Agassiz’s desert tortoise (Gopherus agassizii) is a conservation-reliant species with populations north and west of the Colorado River protected as threatened under the Endangered Species Act (Averill-Murray et al. 2012). Since it was listed under this category in 1990, a great deal has been learned about the natural history of the species, and it is now one of the best-studied turtles in the United States (Lovich and Ennen 2013). However, the accumulated body of scientific data available for the species has not yet been translated into recovery or delisting of the species. Successful conservation of any species requires knowledge of their natural history and how vital rates affect their ability to maintain stable populations in the face of natural and anthropogenic stresses. Agassiz’s desert tortoises occur from southwestern Utah to near the Mexican border in California – a distance of over 450 km – but population densities vary greatly across this immense landscape (U.S. Fish and Wildlife Service 2015). Tortoises occur in the Sonoran Desert of California, including the eastern and western ends of the Coachella Valley, where it is one of 27 species covered under the Coachella Valley Multiple Species Habitat Conservation Plan and Natural Community Conservation Plan (CVMSHCP/NCCP). The southern portion of Joshua Tree National Park (JTNP) lies within this 1.1 million acre planning area, and was predicted to be an area of low-density tortoise populations using habitat suitability modeling (Barrows 2011). JTNP is near the southern distributional limit of G. agassizii, yet very little has been published regarding the ecology of tortoises in the Sonoran Desert of California. Reproductive output is an important gross measure of the ability of a population to persist. When integrated with data on fertility and survivorship, this information forms a foundation for assessing population status and formulating effective management strategies (e.g., Congdon et al. 1993, 1994), especially for imperiled species. One aspect of the biology of G. agassizii that has been particularly well-studied is reproductive output. However, most of what we know about this topic comes from research in the Mojave Desert portion of the species’ range (Ernst and Lovich 2009). Comparatively little has been published on the reproductive ecology of populations living in the Sonoran Desert ecosystem of California. Publications by Lovich et al. (1999, 2011, 2012, 2014, 2015) constitute the main body of literature on desert tortoise reproductive ecology in the Sonoran Desert of California, with one study population located at the western end of the CVMSHCP/NCCP area. Collecting data on Agassiz’s desert tortoise ecology in the Sonoran Desert ecosystem is important due to significant differences between the two adjacent desert ecosystems, especially the timing and amounts of annual precipitation, and their potential effects on reproductive output (e.g., Lovich et al. 5 2015). There are also differences in the vulnerability of tortoises to the effects of a warming, drying climate between the two deserts (Barrows 2011; Zylstra et al. 2012). The overall goal of this study was to collect data on demography, reproductive output, and genetic affinities at a study site in the Sonoran Desert portion of JTNP in the eastern end of the CVMSHCP/NCCP area. Specific objectives included: 1) Collect data to establish baselines on tortoise populations and/or their habitat suitability in core habitat within the CVNCCP area, including biotic and abiotic variables affecting persistence of tortoise populations; 2) Compare and contrast with data collected on desert tortoises at USGS/BLM study site near Palm Springs over 16 years; 3) Support long-term modeling efforts needed to determine tortoise population viability; 4) Refine modeled relationships with identified threats such as fire, invasive species and climate change; and 5) Prioritize adaptive management needs for the desert tortoise in and beyond the CVNCCP area. The data from this study will aid in determining baseline estimates of the desert tortoise population size within the planning area as well as establish a marked population of Agassiz’s desert tortoises for future monitoring. Data will be integrated with habitat modeling in order to refine model output. Genetic data will be collected on both the north and south sides of Interstate 10 to determine the potential effects of habitat fragmentation and genetic mixing. Analyses are ongoing and results beyond those presented in this report will be published in peer-reviewed scientific journals following inclusion of additional data collected on the south side of Shavers Valley in 2017-2018.

Report↗

USGS2014

Birds of a feather

Greater sage-grouse ( Centrocercus urophasiunus , hereafter sage-grouse) are broadly distributed, occupy a diversity of sagebrush habitats, and face multiple threats. As a result of these threats, sage-grouse populations are declining and are now absent from almost one-half of their estimated range prior to Euro-American settlement. The risks to sage-grouse are significant enough to merit candidate status for this species for listing under the U.S. Endangered Species Act (Federal Register Notice, March 5, 2010). According to this decision by the U.S. Fish and Wildlife Service in 2010, population and habitat fragmentation coupled with lack of regulatory mechanisms warranted listing, although implementation of actions has been precluded by other priorities. Candidate status for listing under the Endangered Species Act and possible regulatory action in the near future provide strong motivation to better understand the dynamics of sage-grouse populations and their habitat requirements. The general approach currently taken by managers focuses on maintaining or enhancing sage-grouse populations across their distribution in regions containing the highest densities of breeding birds and their important seasonal habitats, also known as priority areas for conservation (PACs). The rationale behind this approach is that it permits limited resources to be applied in regions that have the greatest potential to benefit the largest proportion of sage-grouse. Development and other forms of land use can then proceed under standard regulations in areas outside PACs. Implementation of this approach requires detailed information about habitat, connections among sage-grouse populations, and approaches to restore and maintain sagebrush. These are important topics of study by the U.S. Geological Survey (USGS) and its research partners.

California;Idaho;Nevada;Oregon;Utah;Washington↗

USGS2025

Evaluation of the acute toxicity of the piscicide TFM to Burbot

Non-target animal sensitivity remains a concern when treating Laurentian Great Lakes streams with 4-nitro-3-(trifluoromethyl)phenol (TFM), the main pesticide used to control Sea Lamprey Petromyzon marinus as part of the bi-national Great Lakes Fishery Commission's Sea Lamprey Control Program. Populations of Burbot Lota lota , a historically and culturally important fish, inhabit some of the streams that are treated with TFM. While many species of fish inhabiting the Great Lakes streams have been assessed for sensitivity to TFM, we are not aware of previous research to assess the risk to Burbot. We assessed the sensitivity of Burbot to TFM using replicate 12-hour flow-through diluter toxicity tests. We found Burbot to have a median lethal concentration (LC 50 ) of 9.74 mg/L, while the minimum lethal concentration (LC 99.9 ) for Sea Lamprey was predicted to be 2.5 mg/L in similar waters. The resulting toxicity ratio (LC 50 of non-target organism/LC 99.9 of Sea Lamprey) of Burbot was 3.90, well above the toxicity ratios for known sensitive species. Our results suggest Burbot are not expected to be adversely affected during a typical TFM stream treatment.

Great Lakes↗

USGS2014

Snake River fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012: Annual report 2002-032-00

Executive Summary a. Fish Population RM&E This annual report describes the data collected and analyses conducted during calendar years 2012-2013 by staff of project 20023200. The USGS contributed only to the predation research and reservoir invertebrate work described in this report and the presentation of their results is consistent with USGS policy guidelines. The USGS is not responsible for the content provided by other contributing authors. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The main goal of this project is to better understand juvenile Snake River fall Chinook salmon life history diversity and the factors that influence it. This is called for in RPA 55.4 “Investigate key characteristics of Snake River fall Chinook salmon early life history.” We 3 investigated the importance of estuary entry and rearing to various Snake River fall Chinook salmon life histories. Otoliths were used to examine differences in estuary use between subyearlings and yearlings, and to determine natal habitats, rearing habitats, and overwintering habitat for returning adults. Estuary growth was best explained by estuary residence time and natal location. b. Predation and Invasive Species Management RM&E We investigated the extent of smallmouth bass predation on juvenile fall Chinook salmon in Lower Granite Reservoir as called for in the Fish and Wildlife Program, “The federal action agencies should work cooperatively with NOAA Fisheries, states, tribes, and the Council to review, evaluate, develop, and implement strategies to reduce non-native piscivorous predation on salmon and steelhead, especially by smallmouth bass, channel catfish, and walleye” (Page 52). Smallmouth bass stomach contents were collected and analyzed for the presence of juvenile salmon. Smallmouth bass abundance was estimated with mark-recapture techniques, and salmon consumption by bass was expanded based on bass abundance to determine the annual loss of juvenile fall Chinook salmon for the study period and area. The estimated loss of juvenile fall Chinook salmon to predation in Lower Granite Reservoir exceeded 109,000 fish in 2012. This information could be used to adaptively formulate better hatchery release strategies to reduce the effects of predation. Obtaining better estimates of smallmouth bass abundance and distribution in future years would reduce the uncertainty of estimates. This study will be completed by 2017. We also examined the effects of various field temperature scenarios resulting from summer flow augmentation on juvenile fall Chinook salmon susceptibility to smallmouth bass predation in laboratory trials. Predation susceptibility of juvenile salmon acclimated at cool temperatures (10°C) was highest when exposed to predators at 24°C. These results indicate that predation susceptibility may be higher when a relatively large temperature difference exists between the Clearwater and Snake rivers; that is, when cool water flow augmentation occurs in summer. Finally, we examined the role of different invasive invertebrates in lower Snake River reservoir food webs that are food, or competitors for food, for juvenile fall Chinook salmon. The Siberian prawn, a relatively new invader, is relatively abundant but its role on the food web is largely unexplored. Prawns are successfully reproducing and their diet is 81% Neomysis (an invasive opossum shrimp) which is heavily used at times by juvenile salmon for food. Neomysis has become very abundant in lower Snake River reservoirs in recent years and may be a profitable food item for many fish species.

Oregon, Washington↗

USGS2016

Using GPS telemetry to determine roadways most susceptible to deer-vehicle collisions

More than 1 million wildlife-vehicle collisions occur annually in the United States. The majority of these accidents involve white-tailed deer (Odocoileus virginianus) and result in >US $4.6 billion in damage and >200 human fatalities. Prior research has used collision locations to assess sitespecific as well as landscape features that contribute to risk of deer-vehicle collisions. As an alternative approach, we calculated road-crossing locations from 25 GPS-instrumented white-tailed deer near Madison, Georgia (n=154,131 hourly locations). We identified crossing locations by creating movement paths between subsequent GPS points and then intersecting the paths with road locations. Using AIC model selection, we determined whether 10 local and landscape variables were successful at identifying areas where higher frequencies of deer crossings were likely to occur. Our findings indicate that traffic volume, distance to riparian areas, and the amount of forested area influenced the frequency of road crossings. Roadways that were predominately located in wooded landscapes and 200–300 m from riparian areas were crossed frequently. Additionally, we found that areas of low traffic volume (e.g., county roads) had the highest frequencies of deer crossings. Analyses utilizing only records of deer-vehicle collision locations cannot separate the relative contribution of deer crossing rates and traffic volume. Increased frequency of road crossings by deer in low-traffic, forested areas may lead to a greater risk of deer-vehicle collision than suggested by evaluations of deer-vehicle collision frequency alone.

Georgia↗

USGS2002

Large scale wildlife monitoring studies: Statistical methods for design and analysis

Techniques for estimation of absolute abundance of wildlife populations have received a lot of attention in recent years. The statistical research has been focused on intensive small-scale studies. Recently, however, wildlife biologists have desired to study populations of animals at very large scales for monitoring purposes. Population indices are widely used in these extensive monitoring programs because they are inexpensive compared to estimates of absolute abundance. A crucial underlying assumption is that the population index ( C ) is directly proportional to the population density ( D ). The proportionality constant, β , is simply the probability of 'detection' for animals in the survey. As spatial and temporal comparisons of indices are crucial, it is necessary to also assume that the probability of detection is constant over space and time. Biologists intuitively recognize this when they design rigid protocols for the studies where the indices are collected. Unfortunately, however in many field studios the assumption is clearly invalid. We believe that the estimation of detection probability should be built into the monitoring design through a double sampling approach. A large sample of points provides an abundance index, and a smaller sub-sample of the same points is used to estimate detection probability. There is an important need for statistical research on the design and analysis of these complex studies. Some basic concepts based on actual avian, amphibian, and fish monitoring studies are presented in this article.

Environmetrics↗

USGS2022

Use of riparian spiders as sentinels of persistent and bioavailable chemical contaminants in aquatic ecosystems: A review

Aquatic ecosystems around the world are contaminated with a wide range of anthropogenic chemicals, including metals and organic pollutants, that originate from point and nonpoint sources. Many of these chemical contaminants have complex environmental cycles, are persistent and bioavailable, can be incorporated into aquatic food webs, and pose a threat to the health of wildlife and humans. Identifying appropriate sentinels that reflect bioavailability is critical to assessing and managing aquatic ecosystems impacted by contaminants. The objective of the present study is to review research on riparian spiders as sentinels of persistent and bioavailable chemical contaminants in aquatic ecosystems. Our review of the literature on riparian spiders as sentinels suggests that significant progress has been made during the last two decades of research. We identified 55 published studies conducted around the world in which riparian spiders (primarily of the families Tetragnathidae, Araneidae, Lycosidae, and Pisauridae) were used as sentinels of chemical contamination of lotic, lentic, and estuarine systems. For several contaminants, such as polychlorinated biphenyls (PCBs), Hg, and Se, it is now clear that riparian spiders are appropriate sentinels. However, many contaminants and factors that could impact chemical concentrations in riparian spiders have not been well characterized. Further study of riparian spiders and their potential role as sentinels is critical because it would allow for development of national-scale programs that utilize riparian spiders as sentinels to monitor chemical contaminants in aquatic ecosystems. A riparian spider sentinel program in the United States would be complementary to existing national sentinel programs, including those for fish and immature dragonflies.

Environmental Toxicology and Chemistry↗

USGS2012

An experimental evaluation of potential scavenger effects on snake road mortality detections

As road networks expand and collisions between vehicles and wildlife become more common, accurately quantifying mortality rates for the taxa that are most impacted will be critical. Snakes are especially vulnerable to collisions with vehicles because of their physiology and behavior. Reptile road mortality is typically quantified using driving or walking surveys; however, scavengers can rapidly remove carcasses from the road and cause underestimation of mortality. Our objective was to determine the effect that scavengers might have had on our ability to accurately detect reptile road mortality during over 150 h and 4,000 km of driving surveys through arid shrublands in southwest Wyoming, which resulted in only two observations of mortality. We developed unique simulated snake carcasses out of Burbot (Lota lota), a locally invasive fish species, and examined removal rates across three different road types at three study sites. Carcass size was not a significant predictor of time of removal, and carcass removal was comparable during the daytime and nighttime hours. However, removal of simulated carcasses was higher on paved roads than unpaved or two-track roads at all study sites, with an average of 75% of the carcasses missing within 60 h compared to 34% and 31%, respectively. Scavengers may therefore negatively impact the ability of researchers to accurately detect herpetofaunal road mortality, especially for paved roads where road mortality is likely the most prevalent.

Wyoming↗

USGS2002

Harlequin duck ( Histrionicus histrionicus ) perspective: Harlequin duck population recovery following the Exxon Valdez oil spill: Progress, process, and constraints

Following the 1989 Exxon Valdez oil spill in Prince William Sound, Alaska, we studied the status of recovery of harlequin duck ( Histrionicus histrionicus ) populations during 1995-1998. We evaluated potential constraints to full recovery, including (1) exposure to residual oil, (2) food limitation, and (3) intrinsic demographic limitations on population growth rates. In this paper, we synthesize the findings from our work and incorporate information from other harlequin duck research and monitoring programs to provide a comprehensive evaluation of the response of this species to the Exxon Valdez oil spill. We conclude that harlequin duck populations had not fully recovered by 1998. Furthermore, adverse effects continued as many as 9 years after the oil spill, in contrast to the conventional paradigm that oil spill effects on bird populations are short-lived. These conclusions are based on the findings that (1) elevated cytochrome P450 induction on oiled areas indicated continued exposure to oil in 1998, (2) adult female winter survival was lower on oiled than unoiled areas during 1995-1998, (3) fall population surveys by the Alaska Department of Fish and Game indicated numerical declines in oiled areas during 1995-1997, and (4) densities on oiled areas in 1996 and 1997 were lower than expected using models that accounted for effects of habitat attributes. Based on hypothesized links between oil contamination and demography, we suggest that harlequin duck population recovery was constrained primarily by continued oil exposure. Full population recovery also will be delayed by the time necessary for intrinsic population growth to allow return to pre-spill numbers following cessation of residual oil spill effects. Although not all wildlife species were affected by the Exxon Valdez oil spill, and some others may have recovered quickly from any effects, harlequin duck life history characteristics and benthic, nearshore feeding habits make them susceptible to both initial and long-term oil spill effects.

Alaska↗

USGS2010

A Natural History Summary and Survey Protocol for the Southwestern Willow Flycatcher

The Southwestern Willow Flycatcher (Empidonax traillii extimus) has been the subject of substantial research, monitoring, and management activity since it was listed as an endangered species in 1995. When proposed for listing in 1993, relatively little was known about the flycatcher's natural history, and there were only 30 known breeding sites supporting an estimated 111 territories rangewide (Sogge and others, 2003a). Since that time, thousands of presence/absences surveys have been conducted throughout the historical range of the flycatcher, and many studies of its natural history and ecology have been completed. As a result, the ecology of the flycatcher is much better understood than it was just over a decade ago. In addition, we have learned that the current status of the flycatcher is better than originally thought: as of 2007, the population was estimated at approximately 1,300 territories distributed among approximately 280 breeding sites (Durst and others, 2008a). Concern about the Southwestern Willow Flycatcher on a rangewide scale was brought to focus by Unitt (1987), who described declines in flycatcher abundance and distribution throughout the Southwest. E. t. extimus populations declined during the 20th century, primarily because of habitat loss and modification from activities, such as dam construction and operation, groundwater pumping, water diversions, and flood control. In 1991, the U.S. Fish and Wildlife Service (USFWS) designated the Southwestern Willow Flycatcher as a candidate category 1 species (U.S. Fish and Wildlife Service, 1991). In July 1993, the USFWS proposed to list E. t. extimus as an endangered species and to designate critical habitat under the Act (U.S. Fish and Wildlife Service, 1993). A final rule listing E. t. extimus as endangered was published in February 1995 (U.S. Fish and Wildlife Service, 1995); critical habitat was designated in 1997 (U.S. Fish and Wildlife Service, 1997). The USFWS Service released a Recovery Plan for the Southwestern Willow Flycatcher in 2002 (U.S. Fish and Wildlife Service, 2002), and re-designated critical habitat in 2005 (U.S. Fish and Wildlife Service, 2005).

Techniques and Methods↗

USGS2002

Harlequin duck population recovery following the 'Exxon Valdez' oil spill: Progress, process and constraints

Following the 1989 'Exxon Valdez' oil spill in Prince William Sound, Alaska, we studied the status of recovery of harlequin duck Histrionicus histrionicus populations during 1995 to 1998. We evaluated potential constraints on full recovery, including (1) exposure to residual oil; (2) food limitation; and (3) intrinsic demographic limitations on population growth rates. In this paper, we synthesize the findings from our work and incorporate information from other harlequin duck research and monitoring programs to provide a comprehensive evaluation of the response of this species to the 'Exxon Valdez' spill. We conclude that harlequin duck populations had not fully recovered by 1998. Furthermore, adverse effects continued as many as 9 yr after the oil spill, in contrast to the conventional paradigm that oil spill effects on bird populations are short-lived. These conclusions are based on the findings that (1) elevated cytochrome P450 (CYP1A) induction on oiled areas indicated continued exposure to oil in 1998; (2) adult female winter survival was lower on oiled than unoiled areas during 1995 to 1998; (3) fall population surveys by the Alaska Department of Fish and Game indicated numerical declines in oiled areas during 1995 to 1997; and (4) densities on oiled areas in 1996 and 1997 were lower than expected using models that accounted for effects of habitat attributes. Based on hypothesized links between oil contamination and demography, we suggest that harlequin duck population recovery was constrained primarily by continued oil exposure. Full population recovery will also be delayed by the time necessary for intrinsic population growth to allow return to pre-spill numbers following cessation of residual oil spill effects. Although not all wildlife species were affected by the 'Exxon Valdez' oil spill, and some others may have recovered quickly from any effects, harlequin duck life history characteristics and benthic, nearshore feeding habits make them susceptible to both initial and long-term oil spill effects.

Alaska↗

USGS2015

Process, policy, and implementation of pool-wide drawdowns on the Upper Mississippi River: a promising approach for ecological restoration of large impounded rivers

The Upper Mississippi River (UMR) has been developed and subsequently managed for commercial navigation by the U.S. Army Corps of Engineers (USACE). The navigation pools created by a series of lock and dams initially provided a complex of aquatic habitats that supported a variety of fish and wildlife. However, biological productivity declined as the pools aged. The River Resources Forum, an advisory body to the St. Paul District of the USACE, established a multiagency Water Level Management Task Force (WLMTF) to evaluate the potential of water level management to improve ecological function and restore the distribution and abundance of fish and wildlife habitat. The WLMTF identified several water level management options and concluded that summer growing season drawdowns at the pool scale offered the greatest potential to provide habitat benefits over a large area. Here we summarize the process followed to plan and implement pool-wide drawdowns on the UMR, including involvement of stakeholders in decision making, addressing requirements to modify reservoir operating plans, development and evaluation of drawdown alternatives, pool selection, establishment of a monitoring plan, interagency coordination, and a public information campaign. Three pool-wide drawdowns were implemented within the St. Paul District and deemed successful in providing ecological benefits without adversely affecting commercial navigation and recreational use of the pools. Insights are provided based on more than 17 years of experience in planning and implementing drawdowns on the UMR.

River Research and Applications↗

USGS2008

Characterization of estuary use by Nisqually Hatchery Chinook based on Otolith analysis

INTRODUCTION The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem are planned to assist in recovery of the stock. A pre-restoration baseline including life history types, estuary residence time, growth rates, and habitat use are needed to evaluate the potential response of hatchery and wild Chinook salmon to restoration. Otolith analysis has been selected as a means to examine Chinook salmon life history, growth, and residence in the Nisqually estuary. Over time, the information from the otolith analyses will be used to: 1) determine if estuary restoration actions cause changes to the population structure (i.e. frequency of the different life history trajectories) for Nisqually River Chinook, 2) compare pre- and post- restoration residence times and growth rates, 3) suggest whether estuary restoration yields substantial benefits for Chinook salmon through (1) and (2), and 4) compare differences in habitat use between hatchery and wild Chinook to further protect ESA listed stock. Otoliths are calcium carbonate structures in the inner ear that grow in proportion to the overall growth of the fish. Daily growth increments can be measured so date and fish size at various habitat transitions can be back-calculated. Careful analysis of otolith microstructure can be used to determine the number of days that a fish resided in the estuary as a juvenile (increment counts), size at entrance to the estuary, size at egress, and the amount that the fish grew while in the estuary. Juvenile hatchery Chinook salmon are generally released as smolts that move quickly through the delta with much shorter residence times than for many wild fish and are not dependent on the delta as nursery habitat (Myers and Horton 1982; Mace 1983; Levings et al. 1986). The purpose of this study is to use and evaluate otolith microstructure analysis as a tool for assessing the role of the estuary in the life history of hatchery Chinook salmon in the Nisqually River before and after restoration efforts at the Nisqually National Wildlife Refuge (Nisqually NWR). This tool is used to quantify changes in rate of growth, length of residence and habitat use to help predict restoration benefits to the federally threatened Nisqually River hatchery and wild Chinook salmon populations. Analysis of otolith microstructure typically is superior to the alternative of traditional mark-recapture methods. The latter are extremely expensive or inadequate in estuary habitats, typically are biased and substantially underestimate use, and do not directly reveal the importance or contribution to adult recruitment (i.e., they do not account for any differential survival afterward in Puget Sound or the ocean). Analysis of otolith microstructure for these purposes is proving successful for the Nisqually wild Chinook stock as well as a similar study that USGS and partners are conducting in the Skagit River estuary system located in northern Puget Sound. This work is based on research by Neilson et al. (1985). We expect to use the Skagit River as a reference for the before/after restoration comparison in the Nisqually River.

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