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USGS2021

Augmented normalized difference water index for improved monitoring of surface water

We present a comprehensive critical review of well-established satellite remote sensing water indices and offer a novel, robust Augmented Normalized Difference Water Index (ANDWI). ANDWI employs an expanded set of spectral bands, RGB, NIR, and SWIR 1-2 , to maximize the contrast between water and non-water pixels. Further, we implement a dynamic thresholding method, the Otsu algorithm, to enhance ANDWI's performance. Applied to a variety of environmental conditions, ANDWI with Otsu-thresholding offered the highest overall accuracy (accuracy = 0.98, F1 = 0.98, and Kappa = 0.96) compared to other indices (NDWI, MNDWI, AWEI, WI). We also propose a novel cloud filtering algorithm that substantially increases the number of useable images compared to the conventional cloud-free composites (124% increased observations in the studied area) and resolves inappropriate masking of water bodies and hot sands as clouds by conventional methods. Finally, we develop a Google Earth Engine App to readily delineate 16-day surface water bodies across the globe.

Environmental Modeling and Software↗

USGS2000

Desert basins of the Southwest

Ground water is among the Nation’s most important natural resources. It provides drinking water to urban and rural communities, supports irrigation and industry, sustains the flow of streams and rivers, and maintains riparian and wetland ecosystems. In many areas of the Nation, the future sustainability of ground-water resources is at risk from overuse and contamination. Because ground-water systems typically respond slowly to human actions, a long-term perspective is needed to manage this valuable resource. This publication is one in a series of fact sheets that describe ground-water-resource issues across the United States, as well as some of the activities of the U.S. Geological Survey that provide information to help others develop, manage, and protect ground-water resources in a sustainable manner. Ground-water resources in the Southwest are among the most overused in the United States. Natural recharge to aquifers is low and pumping in many areas has resulted in lowering of water tables. The consequences of large-scale removal of water from storage are becoming increasingly evident. These consequences include land subsidence; loss of springs, streams, wetlands and associated habitat; and degradation of water quality. Water managers are now seeking better ways of managing ground-water resources while looking for supplemental sources of water. This fact sheet reviews basic information on ground water in the desert basins of the Southwest. Also described are some activities of the U.S. Geological Survey (USGS) that are providing scientific information for sustainable management of ground-water resources in the Southwest. Ground-water sustainability is defined as developing and using ground water in a way that can be maintained for an indefinite time without causing unacceptable environmental, economic, or social consequences.

Arizona;California;Nevada;New Mexico;Utah↗

USGS2000

Analysis of nitrate and volatile organic compound data for ground water in the Great Salt Lake Basins, Utah, Idaho, and Wyoming, 1980-98

In 1995, ground water was the source of drinking water to about 52 percent of the population served by public drinking water systems in the Great Salt Lake Basins study unit, which includes parts of Utah, Idaho, and Wyoming. Existing nitrate and volatile organic compound data for ground water collected in the study unit were compiled and summarized as part of the National Water-Quality Assessment Program’s objective to describe water-quality conditions in the Nation’s aquifers. Prerequisites for the inclusion of nitrate and volatile organic compound data into this retrospective analysis are that the data set is available in electronic form, the data were collected during 1980-98, the data set is somewhat regional in coverage, and the locations of the sampled sites are known. Ground-water data stored in the U.S. Geological Survey’s National Water Information System and the Idaho and Utah Public Drinking Water Systems databases were reviewed. Only the most recent analysis was included in the data sets if more than one analysis was available for a site. The National Water Information System data set contained nitrate analyses for water from 480 wells. The median concentration of nitrate was 1.30 milligrams per liter for the 388 values above minimum reporting limits. The maximum contaminant level for nitrate as established by the U.S. Environmental Protection Agency was exceeded in water from 10 of the 200 wells less than or equal to 150 feet deep and in water from 3 of 280 wells greater than 150 feet deep. The Public Drinking Water Systems data set contained nitrate analyses for water from 587 wells. The median concentration of nitrate was 1.12 milligrams per liter for the 548 values above minimum reporting limits. The maximum contaminant level for nitrate was exceeded at 1 site and 22 sites had concentrations equal to or greater than 5 milligrams per liter. The types of land use surrounding a well and the well depth were related to measured nitrate concentrations in the sampled ground water. Overall, water sampled from wells in rangeland areas had a lower median measured nitrate concentration (0.76 milligrams per liter) than water from areas with an agricultural or urban/residential land use (1.41 and 1.20 milligrams per liter, respectively). In the National Water Information System data set, the median measured nitrate concentration in water from urban/residential areas varied from 1.00 milligrams per liter for wells greater than 150 feet deep to 1.84 milligrams per liter for wells less than or equal to 150 feet deep. The Public Drinking Water Systems and the National Water Information System data sets contained analyses for most of the State and Federally regulated volatile organic compounds in water from about 368 and 74 wells, respectively. Fifteen different volatile organic compounds were detected at least once in ground water sampled from the Great Salt Lake Basins study unit. Water from 21 wells contained at least 1 volatile organic compound at detectable concentrations. About 68 percent of the volatile organic compounds detected were in water sampled from wells in Salt Lake County, Utah. Tetrachloroethylene was the most commonly detected volatile organic compound in ground water sampled from the study unit, present in 8 out of 442 samples. Maximum contaminant levels for tetrachloroethylene and 1,1-dichloroethylene as established by the U.S. Environmental Protection Agency were exceeded in water from one well each.

Idaho,Utah, Wyoming↗

USGS2012

Managing inherent complexity for sustainable walleye fisheries in Lake Erie

In Lake Erie, Walleye ( Sander vitreus vitreus ) is king. The naturally occurring species is the foundation of commercial fishing operations on the Canadian side of the lake and is a much-prized sport fish on the American side. Management of Lake Erie walleye fisheries is complex and takes place in an inter-jurisdictional setting composed of resource agencies from the states of Michigan (MDNR), Ohio (ODNR), Pennsylvania (PFBC), and New York (NYDEC) and the province of Ontario (OMNR). The complexity of walleye management is exacerbated by interactions among environmental and ecological changes in Lake Erie, complex life-history characteristics of the species, public demand for walleye, and cultural/governance differences among managing groups and their respective constituents. Success of future management strategies will largely hinge upon our ability to understand these inherent complexities and to employ tactics that successfully accommodate stock productivity and human demand in a highly dynamic environment. In this report, we review the history of Lake Erie walleye management, outline the multi-jurisdictional process for international management of walleye, and discuss strategies to address challenges facing managers.

Book chapter↗

USGS2009

Environmental exposures to agrochemicals in the Sierra Nevada mountain range

The release of pesticides into the environment may impact human and environmental health. Despite the need for environmental exposure data, few studies quantify exposures in urban areas and even fewer determine exposures to wildlife in remote areas. Although it is expected that concentrations in remote regions will be low, recent studies suggest that even low concentrations may have deleterious effects on wildlife. Many pesticides are known to interfere with the endocrine systems of humans and wildlife, adversely affecting growth, development, and behavior. This chapter reviews the fate and transport of pesticides applied in the Central Valley of California and quantifies their subsequent deposition into the relatively pristine Sierra Nevada Mountain Range.

California↗

USGS2001

Green fluorescent protein is lighting up fungal biology

Prasher ( 42 ) cloned a cDNA for the green fluorescent protein (GFP) gene from the jellyfish Aequorea victoria in 1992. Shortly thereafter, to the amazement of many investigators, this gene or derivatives thereof were successfully expressed and conferred fluorescence to bacteria and Caenorhabditis elegans cells in culture ( 10 , 31 ), followed by yeast ( 24 , 39 ), mammals ( 40 ), Drosophila ( 66 ), Dictyostelium ( 23 , 30 ), plants ( 28 , 49 ), and filamentous fungi ( 54 ). The tremendous success of GFP as a reporter can be attributed to unique qualities of this 238-amino-acid, 27-kDa protein which absorbs light at maxima of 395 and 475 nm and emits light at a maximum of 508 nm. The fluorescence of GFP requires only UV or blue light and oxygen, and therefore, unlike the case with other reporters (β-glucuronidase, β-galacturonidase, chloramphenicol acetyltransferase, and firefly luciferase) that rely on cofactors or substrates for activity, in vivo observation of gfp expression is possible with individual cells, with cell populations, or in whole organisms interacting with symbionts or environments in real time. Complications caused by destructive sampling, cell permeablization for substrates, or leakage of products do not occur. Furthermore, the GFP protein is extremely stable in vivo and has been fused to the C or N terminus of many cellular and extracellular proteins without a loss of activity, thereby permitting the tagging of proteins for gene regulation analysis, protein localization, or specific organelle labeling. The mature protein resists many proteases and is stable up to 65°C and at pH 5 to 11, in 1% sodium dodecyl sulfate or 6 M guanidinium chloride (reviewed in references 17 and 67 ), and in tissue fixed with formaldehyde, methanol, or glutaraldehyde. However, GFP loses fluorescence in methanol-acetic acid (3:1) and can be masked by autofluorescent aldehyde groups in tissue fixed with glutaraldehyde. Fluorescence is optimal at pH 7.2 to 8.0 ( 67 ). Limitations on GFP as a reporter for some applications are its low turnover rate, 2-h lag time for autoactivation of its chromophore, improper folding at high temperatures (37°C), which results in nonfluorescent and insoluble forms of the protein, and requirement for oxygen, which is not present in equal concentrations in all subcellular locations or cell types (reviewed in references 17 and 67 ). These characteristics of GFP, however, have not posed a problem for many applications, and mutant forms of GFP that have an ability to fold properly at high temperatures, increased solubility and fluorescence, reduced photobleaching ( 16 , 17 , 51 ), and reduced half-lives ( 1 ) have been developed. Coupled with fluorescence-activated cell sorting, confocal microscopy or quantitative image analysis techniques, GFP technology can be used to isolate transformed cells or specific cell types from populations of cells ( 14 ), to quantify gene expression of individual cells within whole organisms ( 8 ), or to assess the dispersal and biomass of organisms in complex environments, such as in animal or plant hosts ( 38 , 59 ), in biofilms ( 55 ), in fermentors ( 41 ), on leaf surfaces ( 53 , 61 ), or in soils ( 2 ). The vast majority of studies utilizing GFP expression in fungi have been with yeast (reviewed in reference 13 ). Ustilago maydis was the first filamentous fungus for which successful expression of gfp was reported ( 54 ), followed closely by Aspergillus nidulans ( 22 , 57 ) and Aureobasidium pullulans ( 61 ). Presently, gfp expression has been reported for 16 species comprising 12 genera of filamentous fungi, including Colletotrichum ( 21 , 44 ), Mycosphaerella ( 52 ), Magnaporthe ( 32 , 35 ), Cochliobolus ( 38 ), Trichoderma ( 2 , 70 ), Podospora ( 5 ), Sclerotinia ( 63 ), Schizophyllum ( 37 ), Aspergillus ( 20 , 47 , 50 ) and Phytophthora ( 7 , 62 ). In this review we draw on published reports, with the goal of providing an overview of GFP technology as it applies to the biology of filamentous fungi. These reports are not exhaustive of potential applications of GFP technology, as examples of genomic approaches to utilizing GFP in bacterial and yeast systems attest ( 4 , 46 , 60 , 65 ). Expression of gfp in filamentous fungi requires a gfp variant that is efficiently translated in fungi, a transformation system, and a fungal promoter that satisfies the requirements of a given experimental objective. Transformation of fungi has recently been reviewed by Gold et al. ( 26 ). Robinson and Sharon ( 44 ) suggest that GFP can actually be used to optimize transformation protocols. In addition to reporting the construction of a new fungal transformation vector that expresses SGFP under the control of the ToxA gene promoter from Pyrenophora tritici-repentis ( 12 ) and demonstrating its use in plant pathogens belonging to eight different genera of filamentous fungi ( Fusarium, Botrytis, Pyrenophora, Alternaria, Cochliobolus, Sclerotinia, Colletotrichum , and Verticillium ), in this review we also enumerate and describe a comprehensive list of vectors for expressing GFP in fungi.

Applied and Environmental Microbiology↗

USGS2025

Wet meadow regeneration through restoration of biophysical feedbacks

Wet meadows are globally significant ecosystems that provide critical hydrological, ecological, and biogeochemical functions, yet their extent has declined dramatically due to land use changes and hydrologic alteration. These sedge-dominated wetlands exist at the drier end of the wetland gradient, maintained by shallow groundwater and periodic inundation. This paper is a global synthesis of the ecological, geomorphic, and hydrological dynamics of wet meadows, with an emphasis on alluvial systems, to inform effective restoration strategies. We compare wet meadows to other wetlands, classify them into palustrine, lacustrine, and alluvial types, then focus on alluvial wet meadows and discuss how their formation and persistence depend on ground and surface water interactions, sediment deposition and flow obstructions, all mediated by biological processes. In particular, we highlight the role of hydric graminoids in resisting erosion and maintaining soil cohesion, how beaver promote meadow persistence, and the significance of wet meadows as carbon sinks. We also present stratigraphic evidence demonstrating that incision, often triggered by anthropogenic activity or changing climate, is the primary mechanism of alluvial wet meadow degradation, resulting in water table decline and shifts in vegetation composition. Restoration requires reversing these incisional processes through techniques that elevate water tables, disperse flow and retain sediment—methods traditionally associated with either soil conservation or stream restoration. These include nature-based solutions that create obstructions such as beaver dams and their analogues, rock and wood-based obstructions and incision trench or gully filling and grading. Given their multifunctional value—including but not limited to flood attenuation, biodiversity support, and carbon sequestration—wet meadows warrant a focused restoration framework. This review advocates for a valley-floor scale restoration paradigm that integrates hydrological reconnection, sediment retention, and biological reinforcement to ensure long-term resilience of these systems in the face of changing climate and land use pressures.

Frontiers in Environmental Science↗

USGS2018

Carnivore hotspots in Peninsular Malaysia and their landscape attributes

Mammalian carnivores play a vital role in ecosystem functioning. However, they are prone to extinction because of low population densities and growth rates, and high levels of persecution or exploitation. In tropical biodiversity hotspots such as Peninsular Malaysia, rapid conversion of natural habitats threatens the persistence of this vulnerable group of animals. Here, we carried out the first comprehensive literature review on 31 carnivore species reported to occur in Peninsular Malaysia and updated their probable distribution. We georeferenced 375 observations of 28 species of carnivore from 89 unique geographic locations using records spanning 1948 to 2014. Using the Getis-Ord Gi*statistic and weighted survey records by IUCN Red List status, we identified hotspots of species that were of conservation concern and built regression models to identify environmental and anthropogenic landscape factors associated with Getis-Ord Gi* z scores. Our analyses identified two carnivore hotspots that were spatially concordant with two of the peninsula’s largest and most contiguous forest complexes, associated with Taman Negara National Park and Royal Belum State Park. A cold spot overlapped with the southwestern region of the Peninsula, reflecting the disappearance of carnivores with higher conservation rankings from increasingly fragmented natural habitats. Getis-Ord Gi* z scores were negatively associated with elevation, and positively associated with the proportion of natural land cover and distance from the capital city. Malaysia contains some of the world’s most diverse carnivore assemblages, but recent rates of forest loss are some of the highest in the world. Reducing poaching and maintaining large, contiguous tracts of lowland forests will be crucial, not only for the persistence of threatened carnivores, but for many mammalian species in general.

PLoS ONE↗

USGS2014

Ecological consequences of the expansion of N 2 -fixing plants in cold biomes

Research in warm-climate biomes has shown that invasion by symbiotic dinitrogen (N 2 )-fixing plants can transform ecosystems in ways analogous to the transformations observed as a consequence of anthropogenic, atmospheric nitrogen (N) deposition: declines in biodiversity, soil acidification, and alterations to carbon and nutrient cycling, including increased N losses through nitrate leaching and emissions of the powerful greenhouse gas nitrous oxide (N 2 O). Here, we used literature review and case study approaches to assess the evidence for similar transformations in cold-climate ecosystems of the boreal, subarctic and upper montane-temperate life zones. Our assessment focuses on the plant genera Lupinus and Alnus , which have become invasive largely as a consequence of deliberate introductions and/or reduced land management. These cold biomes are commonly located in remote areas with low anthropogenic N inputs, and the environmental impacts of N 2 -fixer invasion appear to be as severe as those from anthropogenic N deposition in highly N polluted areas. Hence, inputs of N from N 2 fixation can affect ecosystems as dramatically or even more strongly than N inputs from atmospheric deposition, and biomes in cold climates represent no exception with regard to the risk of being invaded by N 2 -fixing species. In particular, the cold biomes studied here show both a strong potential to be transformed by N 2 -fixing plants and a rapid subsequent saturation in the ecosystem’s capacity to retain N. Therefore, analogous to increases in N deposition, N 2 -fixing plant invasions must be deemed significant threats to biodiversity and to environmental quality.

Oecologia↗

USGS2012

The U.S. Geological Survey Amphibian Research and Monitoring Initiative-2011 Annual Update

Welcome to the inaugural issue of ARMI's Annual Update. This update provides highlights and significant milestones of this innovative program. ARMI is uniquely qualified to provide research and monitoring results that are scalable from local to national levels, and are useful to resource managers. ARMI has produced nearly 400 peer-reviewed publications, including 18 in 2011. Some of those publications are highlighted in this fact sheet. ARMI also has a new Website (armi.usgs.gov). You can now use it to explore an up-to-date list of ARMI products, to find summaries of research topics, to search for ARMI activities in your area, and to obtain amphibian photographs. ARMI's annual meeting was organized by Walt Sadinski, Upper Midwest Environmental Science Center, and held in St Louis, Missouri. We met with local scientists and managers in herpetology and were given a tour of the herpetology collection at the St. Louis Zoo.

Fact Sheet↗

USGS2002

Visualization of Flow Alternatives, Lower Missouri River

Background The U.S. Army Corps of Engineers (COE) 'Missouri River Master Water Control Manual' (Master Manual) review has resulted in consideration of many flow alternatives for managing the water in the river (COE, 2001; 1998a). The purpose of this report is to present flow-management alternative model results in a way that can be easily visualized and understood. This report was updated in October 2001 to focus on the specific flow-management alternatives presented by the COE in the 'Master Manual Revised Draft Environmental Impact Statement' (RDEIS; COE, 2001). The original version (February 2000) is available by clicking here. The COE, U.S. Fish and Wildlife Service (FWS), Missouri River states, and Missouri River basin tribes have been participating in discussions concerning water management of the Missouri River mainstem reservoir system (MRMRS), the Missouri River Bank Stabilization and Navigation Project, and the Kansas River reservoir system since 1986. These discussions include general input to the revision of the Master Manual as well as formal consultation under Section 7 of the Endangered Species Act. In 2000, the FWS issued a Biological Opinion that prescribed changes to reservoir management on the Missouri River that were believed to be necessary to preclude jeopardy to three endangered species, the pallid sturgeon, piping plover, and interior least tern (USFWS, 2000). The combined Missouri River system is large and complex, including many reservoirs, control structures, and free-flowing reaches extending over a broad region. The ability to assess future impacts of altered management scenarios necessarily involves complex, computational models that attempt to integrate physical, chemical, biological, and economic effects. Graphical visualization of the model output is intended to improve understanding of the differences among flow-management alternatives.

Colorado, Iowa, Kansas, Missouri, Montana, Nebrask↗

USGS2022

Compilation and evaluation of data used to identify groundwater sources under the direct influence of surface water in Pennsylvania

A study was conducted to compile and evaluate data used to identify groundwater sources that are under the direct influence of surface water (GUDI) in Pennsylvania. In the early 1990s, the Pennsylvania Department of Environmental Protection (PADEP) implemented the Surface Water Identification Protocol (SWIP) for the identification of GUDI sources. Since the establishment of the SWIP, PADEP has classified more than 500 individual sources across Pennsylvania as GUDI, but Pennsylvania’s complex geology and physiography provide a challenge for a uniform method of GUDI determination. Components used in this study to compile and evaluate data associated with GUDI determination include: (1) a preliminary review of file information for 43 public water-supply wells, (2) quality control and addition of data to PADEP’s database for public water-supply systems to prepare data for analysis, and (3) exploratory evaluation of existing GUDI sources in the database with respect to hydrogeologic and source-construction characteristics that are currently utilized in the assessment methodology. Case files for 43 wells from PADEP’s Northcentral and Southcentral regions were reviewed to: (1) provide a better understanding of how the SWIP was applied in practice, (2) verify and compile missing data, and (3) find additional attributes not previously available that might explain a well’s categorization as GUDI. Review of file information showed that the SWIP outlined in PADEP technical guidance was usually followed, but for some sources, the GUDI determination was more complex and could not be easily summarized. Data compiled for study analyses provided by PADEP include source data derived from public water-supply system case files, a source-information database for public water-supply systems, and Microscopic Particulate Analysis (MPA) results and associated water-quality data for public water-supply system groundwater sources. Data from the Pennsylvania Drinking Water Information System (PADWIS) , which is PADEP’s database for public water-supply systems, were also used for this study. The PADWIS database originally included data for 12,147 groundwater sources (11,812 groundwater sources not under the direct influence of surface water (non-GUDI) wells and 335 GUDI wells). A subset (4,018 wells consisting of 3,842 non-GUDI wells and 175 GUDI wells) of the PADWIS database was created for an analysis and includes only community wells evaluated in accordance with the SWIP. MPA results for 631 community and noncommunity wells were compiled, along with associated water-quality data (alkalinity, chloride, Escherichia coli , fecal coliform, nitrate, pH, sodium, specific conductance, sulfate, total coliform, total dissolved solids, total residue, and turbidity) populated from the PADEP Bureau of Laboratories Sample Information System. Data compiled from sources other than PADEP include spatial data, both naturogenic (for example, average precipitation or distance to closest hydrologic feature) and anthropogenic (for example, percentage of developed or agricultural land cover within a specific vicinity of a public water-supply system well) data representing spatially derived variables. Comparison among wells in the PADWIS dataset subset using the nonparametric Kruskal-Wallis test showed that GUDI wells had significantly older median construction years, shallower depths, and static water levels closer to the land surface than non-GUDI wells and that carbonate aquifers had the highest percentages of wells designated as GUDI (12 percent; 57 wells). Further comparison of wells in the PADWIS database subset using the Spearman’s rho monotonic correlation test illustrated that public water-supply wells designated as GUDI largely occur in unconfined aquifers and have high average yield and shallow static water levels. Assessment of the MPA database subset using the Kruskal-Wallis test showed wells with MPA total risk-factor scores that exceeded zero had older median construction years and shallower casing depths than wells with MPA total risk-factor scores of zero and that carbonate aquifers had the highest percentages of wells with MPA total risk-factor scores exceeding zero (30 percent; 63 wells). Spearman’s rho correlations showed that wells completed in aquifers with depths to major water-bearing zones closer to the land-surface had higher total risk-factor scores resulting from MPA samples. Based on the results of the analyses described in this report, broad conclusions can be drawn regarding site-specific well characteristics as well as anthropogenic and naturogenic factors that could be responsible for a well being designated as GUDI, but the accuracy of these results is dependent on the quality of the data being analyzed. Ultimately, study results serve as an added resource for initial desktop screening of wells to determine if additional site-specific investigation is warranted and underscore the need for field evaluation.

Pennsylvania↗

USGS2026

Restoring dryland water cycles for precipitation feedback and climate stability; a review

Drylands across the globe are experiencing intensifying water scarcity, land degradation, and hydroclimatic extremes. This review integrates evidence from multidecadal field studies, hydrologic monitoring, geomorphic and ecological assessments, remote sensing, and land–atmosphere science to evaluate how restoration influences key components of the terrestrial water cycle. Low-tech natural infrastructure in dryland streams (NIDS)—including check dams, leaky weirs, one-rock dams, and gabions—has emerged as a promising but under-synthesized nature-based solution for restoring hydrologic function in these environments. We describe the mechanisms through which these interventions modify runoff detention, infiltration, sediment and alluvial storage, shallow-groundwater recharge, vegetation recovery, and surface-energy partitioning, and we summarize outcomes across diverse dryland settings. Findings consistently show increased water residence time, enhanced soil-moisture storage, expanded riparian vegetation, extended flow duration, and shifts toward greater latent-heat flux—producing localized cooling and strengthened ecohydrological feedbacks. Building on these localized effects, we articulate a hypothesis that links the spatial extent of restoration, the density of NIDS per unit drainage area, and the magnitude of the latent-to-sensible-heat contrast generated by wetter post-rainfall conditions. Specifically, we hypothesize that when NIDS are implemented at densities permitted by topography and across areas large enough to maintain elevated soil moisture after storm events, the resulting increases in latent heat flux, surface cooling, and boundary-layer moistening may enhance moisture convergence and boundary-layer development, potentially increasing the likelihood or stability of convective precipitation, analogous to how reductions in these processes have contributed to regional drought intensification. These land–atmosphere feedbacks remain untested at scale but represent an important research Frontier. By integrating hydrologic, geomorphic, ecological, and atmospheric perspectives, this review provides a comprehensive framework for considering how low-tech, landscape-scale interventions can strengthen watershed resilience and contribute to climate-relevant nature-based solutions.

Arizona↗

USGS2017

Guidance documents: Continued support to improve operations of fish hatcheries and field sites to reduce the impact or prevent establishment of New Zealand Mudsnails and other invasive mollusks

This project tested and revised a risk assessment/management tool authored by Moffitt and Stockton designed to provide hatchery biologists and others a structure to measure risk and provide tools to control, prevent or eliminate invasive New Zealand mudsnails (NZMS) and other invasive mollusks in fish hatcheries and hatchery operations. The document has two parts: the risk assessment tool, and an appendix that summarizes options for control or management. The framework of the guidance document for risk assessment/hatchery tool combines approaches used by the Hazard Analysis and Critical Control Points (HACCP) process with those developed by the Commission for Environmental Cooperation (CEC), of Canada, Mexico, and the United States, in the Tri-National Risk Assessment Guidelines for Aquatic Alien Invasive Species. The framework approach for this attached first document assesses risk potential with two activities: probability of infestation and consequences of infestation. Each activity is treated equally to determine the risk potential. These two activities are divided into seven basic elements that utilize scientific, technical, and other relevant information in the process of the risk assessment. To determine the probability of infestation four steps are used that have scores reported or determined and averaged. This assessment follows a familiar HACCP process to assess pathways of entry, entry potential, colonization potential, spread potential. The economic, environmental and social consequences are considered as economic impact, environmental impact, and social and cultural influences. To test this document, the Principal Investigator worked to identify interested hatchery managers through contacts at regional aquaculture meetings, fish health meetings, and through the network of invasive species managers and scientists participating in the Western Regional Panel on Aquatic Nuisance Species and the 100th Meridian Initiative's Columbia River Basin Team, and the Western New Zealand Mudsnail Conference in Seattle. Targeted hatchery workshops were conducted with staff at Dworshak National Fish Hatchery Complex (ID), Similkameen Pond, Oroville WA, and Ringold Springs State Hatchery (WA). As a result of communications with hatchery staff, invasive species managers, and on site assessments of hatchery facilities, the document was modified and enhanced. Additional resources were added to keep it up to date. The result is a more simplified tool that can lead hatchery or management personnel through the process of risk assessment and provide an introduction to the risk management and communication process. In addition to the typical HACCP processes, this tool adds steps to rate and consider uncertainty and the weight of evidence regarding options and monitoring results . Uncertainty of outcome exists in most tools that can be used to control or prevent NZMS or other invasive mollusks from infesting an area. In additional this document emphasizes that specific control tools and plans must be tailored to each specific setting to consider the economic, environmental and social influences. From the testing and evaluation process, there was a strong recognition that a number of control and prevention tools previously suggested and reported in the literature from laboratory and small scale trials may not be compatible with regional and national regulations, economic constraints, social or cultural constraints, engineering or water chemistry characteristics of each facility. The options for control are summarized in the second document, Review of Control Measures for Hatcheries Infested with NZMS (Appendix A) that provides sources for additional resources and specific tools, and guidance regarding the feasibility and success of each approach. This tool also emphasizes that management plans need to be adaptive and incorporate oversight from professionals familiar with measuring risks of fish diseases, and treatments (e.g. the fish health practitioners and water quality and effluent management teams). Finally, with such a team, the adaptive management approach must be ongoing, and become a regular component of hatchery operations. Although it was the intent that this two part document would be included as part of the revised National Management and Control Plan for the NZMS proposed by the U.S. Fish and Wildlife Service (USFWS) and others, it is provided as a stand-alone document.

Cooperator Science Series↗

USGS2015

Human activities and climate variability drive fast-paced change across the world's estuarine-coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea-land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.

Global Change Biology↗

USGS2012

Mercury and halogens in coal--Their role in determining mercury emissions from coal combustion

Mercury is a toxic pollutant. In its elemental form, gaseous mercury has a long residence time in the atmosphere, up to a year, allowing it to be transported long distances from emission sources. Mercury can be emitted from natural sources such as volcanoes, or from anthropogenic sources, such as coal-fired powerplants. In addition, all sources of mercury on the Earth's surface can re-emit it from land and sea back to the atmosphere, from which it is then redeposited. Mercury in the atmosphere is present in such low concentrations that it is not considered harmful. Once mercury enters the aquatic environment, however, it can undergo a series of biochemical transformations that convert a portion of the mercury originally present to methylmercury, a highly toxic organic form of mercury that accumulates in fish and birds. Many factors contribute to creation of methylmercury in aquatic ecosystems, including mercury availability, sediment and nutrient load, bacterial influence, and chemical conditions. In the United States, consumption of fish with high levels of methylmercury is the most common pathway for human exposure to mercury, leading the U.S. Environmental Protection Agency (EPA) to issue fish consumption advisories in every State. The EPA estimates that 50 percent of the mercury entering the atmosphere in the United States is emitted from coal-burning utility powerplants. An EPA rule, known as MATS (for Mercury and Air Toxics Standards), to reduce emissions of mercury and other toxic pollutants from powerplants, was signed in December 2011. The rule, which is currently under review, specifies limits for mercury and other toxic elements, such as arsenic, chromium, and nickel. MATS also places limits on emission of harmful acid gases, such as hydrochloric acid and hydrofluoric acid. These standards are the result of a 2010 detailed nationwide program by the EPA to sample stack emissions and thousands of shipments of coal to coal-burning powerplants. The United States is the only nation to have collected such detailed information for mercury in both its coal and its utility emissions.

Fact Sheet↗

USGS2024

Structured science syntheses to inform decision making on Federal public lands

The U.S. Geological Survey, Bureau of Land Management, and U.S. Fish and Wildlife Service partnered to develop a new type of science product: the structured science synthesis. Structured science syntheses are peer-reviewed reports that synthesize science information about a priority resource management issue on public lands. Structured science syntheses are developed explicitly to facilitate the application of science to decision making. Key characteristics of structured science syntheses include that they are coproduced with resource managers, developed using clear, repeatable methods and designed for ease of use. The syntheses include different types of science information needed for analyses completed under the National Environmental Policy Act.

Fact Sheet↗

USGS1981

Engineering geology investigation, Little Granite Creek road corridor, Teton National Forest, Teton County, Wyoming

This report summarizes the results of an engineering geology investigation for the proposed Little Granite Creek Road Corridor access to the Getty drill site. The purpose of the investigation was to provide geologic data so that the U.S. Forest Service and U.S. Geological Survey can jointly draft an Environmental Impact Statement. The location of the proposed road corridor is shown on Fig. 1. The general geologic conditions within the corridor are described and their anticipated impacts on the proposed road are discussed. The data and conclusions presented in this report are suitable for evaluating general impacts; however, additional detailed studies will be required for final design purposes. The geologic conditions in the proposed road corridor were evaluated by reviewing published regional geologic maps, a field reconnaissance, and interpretation of aerial photographs. The largest scale geologic map available for the area is the 1:24,000, Geologic Map of the Bull Creek Quadrangle, Schroeder (1976). In early October, 1980, a field reconnaissance was made by Doug Stack and Ralph Mock of Chen and Associates, Inc. along the proposed road alignment. In addition, colored aerial photography at a scale of 1:15840 was available for our investigation.

Wyoming↗