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Daniel Goodman’s empirical approach to Bayesian statistics

Bayesian statistics, in contrast to classical statistics, uses probability to represent uncertainty about the state of knowledge. Bayesian statistics has often been associated with the idea that knowledge is subjective and that a probability distribution represents a personal degree of belief. Dr. Daniel Goodman considered this viewpoint problematic for issues of public policy. He sought to ground his Bayesian approach in data, and advocated the construction of a prior as an empirical histogram of “similar” cases. In this way, the posterior distribution that results from a Bayesian analysis combined comparable previous data with case-specific current data, using Bayes’ formula. Goodman championed such a data-based approach, but he acknowledged that it was difficult in practice. If based on a true representation of our knowledge and uncertainty, Goodman argued that risk assessment and decision-making could be an exact science, despite the uncertainties. In his view, Bayesian statistics is a critical component of this science because a Bayesian analysis produces the probabilities of future outcomes. Indeed, Goodman maintained that the Bayesian machinery, following the rules of conditional probability, offered the best legitimate inference from available data. We give an example of an informative prior in a recent study of Steller sea lion spatial use patterns in Alaska.

PeerJ

Nutrients, phytoplankton, zooplankton, and macrobenthos

Lower trophic levels support the prey fish on which most sport fish depend. Therefore, understanding the production potential of lower trophic levels is integral to the management of Lake Ontario’s fishery resources. Lower trophic-level productivity differs among offshore and nearshore waters. In the offshore, there is concern about the ability of the lake to support Alewife (Table 1) production due to a perceived decline in productivity of phytoplankton and zooplankton whereas, in the nearshore, there is a concern about excessive attached algal production (e.g., Cladophora) associated with higher nutrient concentrations—the oligotrophication of the offshore and the eutrophication of the nearshore (Mills et al. 2003; Holeck et al. 2008; Dove 2009; Koops et al. 2015; Stewart et al. 2016). Even though the collapse of the Alewife population in Lake Huron in 2003 (and the associated decline in the Chinook Salmon fishery) may have been precipitated by a cold winter (Dunlop and Riley 2013), Alewife had not returned to high abundances in Lake Huron as of 2014 (Roseman et al. 2015). Failure of the Alewife population to recover from collapse has been attributed to declines in lower trophic-level production (Barbiero et al. 2011; Bunnell et al. 2014; but see He et al. 2015). In Lake Michigan, concerns of a similar Alewife collapse led to a decrease in the number of Chinook Salmon stocked. If lower trophic-level production declines in Lake Ontario, a similar management action could be considered. On the other hand, in Lake Erie, which supplies most of the water in Lake Ontario, eutrophication is increasing and so are harmful algal blooms. Thus, there is also a concern that nutrient levels and algal blooms could increase in Lake Ontario, especially in the nearshore. Solutions to the two processes of concern—eutrophication in the nearshore and oligotrophication in the offshore—may be mutually exclusive. In either circumstance, fisheries management needs information on the productivity of lower trophic levels in Lake Ontario. In this chapter, we review the status of lower trophic levels in Lake Ontario with special attention to the current (2008-2013) and previous (2003-2007) reporting periods. During the two reporting periods, three whole-lake surveys of lower trophic levels were conducted: the Lower Trophic Level Assessment (LOLA) in 2003 and 2008 (Makarewicz and Howell 2012; Munawar et al. 2015b) and the Cooperative Science and Management Initiative (CSMI) in 2013. Analyses of the CSMI data are ongoing. In addition to the three one-year sources of information on lower trophic levels, several multi-year sources of information are available, including data from the surveillance program conducted since 1965 by Environment Canada (EC) (Dove 2009), monitoring conducted since 1980 by the U.S. Environmental Protection Agency’s (EPA) Great Lakes National Program Office (GLNPO) (Barbiero et al. 2014; Reavie et al. 2014), sampling for a Bioindex Program at two stations, one offshore and one in the Eastern Basin, assessments of Mysis diluviana (formerly Mysis relicta) conducted since 1980 by Fisheries and Oceans Canada (Johannsson et al. 1998, 2011) and the Ontario Ministry of Natural Resources and Forestry (OMNRF), and monitoring conducted since 1995 by the Biomonitoring Program (BMP) on the New York side of the lake (Holeck et al. 2015b). The BMP is a collaboration of the New York State Department of Environmental Conservation (DEC), U.S. Fish and Wildlife Service, U.S. Geological Survey (USGS), and Cornell University.

Special Publication

Gene flow and spatial population structure of Brook Trout in a large headwater stream network in Colorado

We studied gene flow of non-native Brook Trout Salvelinus fontinalis in a 60-km section of continuous stream network in the upper Cache la Poudre River basin, where a large-scale reclamation effort to restore federally threatened Greenback Cutthroat Trout Oncorhynchus clarkii stomias (GBCT) is taking place. This effort—the Poudre Headwaters Project—represents the most important recovery effort of the state fish of Colorado and could result in a fivefold increase in total occupied GBCT habitat. However, the reclamation area is currently dominated by non-native Brook Trout; key steps to ensure the success of the Poudre Headwaters Project include removing non-native Brook Trout and physically isolating the area from reinvasion. We examined existing genetic population structure in the reclamation area to provide science-based guidance for effective Brook Trout removal and subsequent GBCT reintroduction. During 2018 and 2019, tissue samples were collected from 23 sites in the Long Draw region. We genotyped 792 Brook Trout using 12 microsatellite loci to examine genetic population structure within the reclamation area. Our results show that fine-scale genetic population structure is present among sites (F ST = 0.038) and overall genetic diversity is comparable to previously published estimates throughout the native range of Brook Trout (H O = 0.610; HE = 0.618). Analysis of genetic differentiation among sites indicates that sites in the reclamation area may function as a metapopulation, with fine-scale genetic structure present among tributaries that are connected by gene flow. Understanding how the landscape influences connectivity and population persistence will provide sciencebased guidance for Brook Trout removal efforts and allow managers to release GBCT in stretches of key habitat that ensure the highest probability of reintroduction success.

Colorado

Science Review for the Scott Bar Salamander (Plethodon asupak) and the Siskiyou Mountains Salamander (P. stormi): Biology, Taxonomy, Habitat, and Detection Probabilities/Occupancy

The Plethodon elongatus Complex in the Klamath-Siskiyou Ecoregion of southern Oregon and northern California includes three species: the Del Norte salamander, Plethodon elongatus; the Siskiyou Mountains salamander, P. stormi; and the Scott Bar salamander, P. asupak. This review aims to summarize the current literature and information available on select topics for P. stormi and P. asupak. These are both terrestrial salamanders belonging to the Family Plethodontidae, which contains more species and has a wider geographic distribution than any other family of salamanders (Wake 1966, 2006; Pough 1989). The genera of this family have greatly diversified ecologically across North America, Central America, northern South America, Sardinia, southeastern France and northwestern Italy, and have recently been discovered on the Korean peninsula (Min et al. 2005). The genus Plethodon is found exclusively in North America and is split into three distinct clades, based upon morphology and phylogenetics (Highton and Larson 1979): eastern small Plethodon, eastern large Plethodon, and the western Plethodon. The western Plethodon are the greatest representation of Plethodontidae in the Pacific Northwest, with 8 species. The two species with the most restricted ranges of these regional congeners are the Siskiyou Mountains and Scott Bar salamanders. These salamanders occupy the interior of the Klamath-Siskiyou Ecoregion which straddles the California and Oregon state lines, between Siskiyou County (CA) and Jackson and Josephine Counties (OR). The relatively recent discovery of P. asupak (Mead et al. 2005) and the limited range of both species have created an environment of uncertain conservation status for these species. This review will focus on four central topics of concern for land and resource managers: Biology; Taxonomy; Habitat; and Detection Probabilities/Occupancy.

Open-File Report

Comparative velocity structure of active Hawaiian volcanoes from 3-D onshore-offshore seismic tomography

We present a 3-D P-wave velocity model of the combined subaerial and submarine portions of the southeastern part of the Island of Hawaii, based on first-arrival seismic tomography of marine airgun shots recorded by the onland seismic network. Our model shows that high-velocity materials (6.5-7.0??km/s) lie beneath Kilauea's summit, Koae fault zone, and the upper Southwest Rift Zone (SWRZ) and upper and middle East Rift Zone (ERZ), indicative of magma cumulates within the volcanic edifice. A separate high-velocity body of 6.5-6.9??km/s within Kilauea's lower ERZ and upper Puna Ridge suggests a distinct body of magma cumulates, possibly connected to the summit magma cumulates at depth. The two cumulate bodies within Kilauea's ERZ may have undergone separate ductile flow seaward, influencing the submarine morphology of Kilauea's south flank. Low velocities (5.0-6.3??km/s) seaward of Kilauea's Hilina fault zone, and along Mauna Loa's seaward facing Kao'iki fault zone, are attributed to thick piles of volcaniclastic sediments deposited on the submarine flanks. Loihi seamount shows high-velocity anomalies beneath the summit and along the rift zones, similar to the interpreted magma cumulates below Mauna Loa and Kilauea volcanoes, and a low-velocity anomaly beneath the oceanic crust, probably indicative of melt within the upper mantle. Around Kilauea's submarine flank, a high-velocity anomaly beneath the outer bench suggests the presence of an ancient seamount that may obstruct outward spreading of the flank. Mauna Loa's southeast flank is also marked by a large, anomalously high-velocity feature (7.0-7.4??km/s), interpreted to define an inactive, buried volcanic rift zone, which might provide a new explanation for the westward migration of Mauna Loa's current SWRZ and the growth of Kilauea's SWRZ. ?? 2007 Elsevier B.V. All rights reserved.

Earth and Planetary Science Letters

Factors contributing to pesticide contamination in riverine systems: The role of wastewater and landscape sources

Wastewater treatment plant (WWTP) discharges can be a source of organic contaminants, including pesticides, to rivers. An integrated model was developed for the Potomac River watershed (PRW) to determine the amount of accumulated wastewater percentage of streamflow (ACCWW) and calculate predicted environmental concentrations (PECs) for 14 pesticides in non-tidal National Hydrography Dataset Plus Version 2.1 stream segments. Predicted environmental concentrations were compared to measured environmental concentrations (MECs) from 32 stream sites that represented a range of ACCWW and land use to evaluate model performance and to assess possible non-WWTP loading sources. Statistical agreement between PECs and MECs was strongest for insecticides, followed by fungicides and herbicides. Principal component analysis utilizing optical fluorescence and ancillary water quality data identified wastewater and urban runoff sources. Pesticides that indicated relatively larger sources from WWTPs included dinotefuran, fipronil, carbendazim, thiabendazole, and prometon whereas imidacloprid, azoxystrobin, propiconazole, tebuconazole, and diuron were more related to urban runoff. In addition, PECs generally comprised a low proportion of MECs, which indicates possible dominant loading sources beyond WWTP discharges. Cumulative potential toxicity was higher for sites with greater ACCWW and/or located in developed areas. Imidacloprid, fipronil, and carbendazim accounted for the largest portion of predicted potential toxicity across sites. The chronic aquatic life toxicity benchmarks for freshwater invertebrates were exceeded for 82 % of the imidacloprid detections ( n = 28) and 47 % of the fipronil detections ( n = 19). These results highlight the ecological implications of pesticide contamination from WWTP discharges and also the potential legacy effects from accumulated soil and groundwater sources. Pesticide management strategies that mitigate both current and historical impacts may improve the health of aquatic ecosystems.

Potomac River watershed

Influence of basin- and local-scale environmental conditions on nearshore production in the northeast Pacific Ocean

Nearshore marine habitats are productive and vulnerable owing to their connections to pelagic and terrestrial landscapes. To understand how ocean basin- and local-scale conditions may influence nearshore species, we developed an annual index of nearshore production (spanning the period 1972–2010) from growth increments recorded in otoliths of representative pelagic-feeding (Black Rockfish Sebastes melanops ) and benthic-feeding (Kelp Greenling Hexagrammos decagrammus ) nearshore-resident fishes at nine sites in the California Current and Alaska Coastal Current systems. We explored the influence of basin- and local-scale conditions across all seasons at lags of up to 2 years to represent changes in prey quantity (1- or 2-year time lags) and quality (within-year relationships). Relationships linking fish growth to basin-scale (Pacific Decadal Oscillation, North Pacific Gyre Oscillation, and multivariate El Niño–Southern Oscillation index) and local-scale (sea surface temperature, sea surface height anomalies, upwelling index, photosynthetically active radiation, and freshwater discharge) environmental conditions varied by species and current system. Growth of Black Rockfish increased with cool basin-scale conditions in the California Current and warm local-scale conditions in the Alaska Coastal Current, consistent with existing hypotheses linking climate to pelagic production on continental shelves in the respective regions. Relationships for Kelp Greenlings in the California Current were complex, with faster growth related to within-year warm conditions and lagged-year cool conditions. These opposing, lag-dependent relationships may reflect differences in conditions that promote quantity versus quality of benthic invertebrate prey in the California Current. Thus, we hypothesize that benthic production is maximized by alternating cool and warm years, as benthic invertebrate recruitment is food limited during warm years while growth is temperature limited by cool years in the California Current. On the other hand, Kelp Greenlings grew faster during and subsequent to warm conditions at basin and local scales in the Alaska Coastal Current.

Marine and Coastal Fisheries: Dynamics, Management

Structure, diversity, and biophysical properties of old-growth forestsin the Klamath region, USA

The diverse old-growth forests in Klamath region of northern California and southern Oregon provide valuable ecosystem services (e.g., maintaining watersheds, wildlife habitat, recreation), but may be vulnerable to a wide range of stressors, including invasive species, disrupted disturbance regimes, and climatic change. Yet our understanding of how forest structure in the Klamath region relates to the current physical environment is limited. Here we provide present-day benchmarks for old-growth forest structure across a climatic gradient ranging from coastal to dry interior sites. We established 16 large (1 ha) forest plots where all stems > 5 cm in diameter were identified to species and mapped. Climate across these sites was highly variable, with estimated actual evapotranspiration correlated to several basic measures of forest structure, including plot basal area, stem size-class inequality, tree species diversity and, to a lesser extent, tree species richness. Analyses of the spatial arrangement of stems indicated a high degree of non-uniformity, with 75% of plots showing significant stem clumping at small spatial scales (0 to 10 m). Downscaled predictions of future site water balance suggest changes will be dominated by rapidly increasing climatic water deficit (D, a biologically meaningful index of drought). While these plots give a picture of current conditions, continued monitoring of these stands is needed to describe forest dynamics and to detect forest responses to ongoing and future stressors.

Klamath region

Estimating ecosystem carbon stocks at Redwood National and State Parks

Accounting for ecosystem carbon is increasingly important for park managers. In this case study we present our efforts to estimate carbon stocks and the effects of management on carbon stocks for Redwood National and State Parks in northern California. Using currently available information, we estimate that on average these parks’ soils contain approximately 89 tons of carbon per acre (200 Mg C per ha), while vegetation contains about 130 tons C per acre (300 Mg C per ha). estoration activities at the parks (logging-road removal, second-growth forest management) were shown to initially reduce ecosystem carbon, but may provide for enhanced ecosystem carbon storage over the long term. We highlight currently available tools that could be used to estimate ecosystem carbon at other units of the National Park System.

California

Flood-inundation maps for the Pawtuxet River in West Warwick, Warwick, and Cranston, Rhode Island

A series of 15 digital flood-inundation maps was developed for a 10.2-mile reach of the Pawtuxet River in the municipalities of West Warwick, Warwick, and Cranston, Rhode Island, by the U.S. Geological Survey (USGS), in cooperation with the Rhode Island Emergency Management Agency and the U.S. Army Corps of Engineers. The coverage of the maps extends downstream from Natick Pond dam near State Route 33/Providence Street bridge in West Warwick to the mouth of the river at Pawtuxet Cove (Broad Street bridge) on the border between Cranston and Warwick, R.I. A one-dimensional step-backwater hydraulic model created and calibrated for the Federal Emergency Management Agency Flood Insurance Studies for Kent and Providence Counties in 2015 was updated for this study. The updated hydraulic model reflects the removal of the Pawtuxet Falls dam during 2011 and the raised elevation of a levee surrounding the Warwick Sewer Authority wastewater treatment facility during 2014–17. The hydraulic model was calibrated by using the current (2018) stage-discharge relation at the USGS Pawtuxet River at Cranston, Rhode Island, streamgage (01116500) and documented high-water marks from the March 31, 2010, flood, which had a peak flow greater than the estimated 0.2-percent annual exceedance probability floodflow. The hydraulic model was used to compute water-surface profiles for 15 flood stages at 1-foot (ft) intervals referenced to the USGS Pawtuxet River at Cranston, Rhode Island, streamgage (01116500) and ranging from 8.0 ft (15.2 ft, North American Vertical Datum of 1988), which is the National Weather Service Advanced Hydrologic Prediction Service flood category “action stage,” to 22.0 ft (29.2 ft, North American Vertical Datum of 1988), which is the maximum stage of the stage-discharge relation at the streamgage and exceeds the National Weather Service Advanced Hydrologic Prediction Service flood category “major flood stage” of 13.0 ft. The simulated water-surface profiles were combined with a geographic information system digital elevation model derived from light detection and ranging (lidar) data with a 1.0-ft vertical accuracy to create flood-inundation maps. The flood-inundation maps depict estimates of the areal extent and depth of flooding corresponding to 15 selected flood stages at the streamgage. The flood-inundation maps depict only riverine flooding and do not depict any tidal backwater or coastal storm surge that might occur in the lower part of the river reach. The flood-inundation maps can be accessed through the USGS Flood Inundation Mapping Science website at https://water.usgs.gov/osw/flood_inundation . Near-real-time stages and discharges at the Pawtuxet River streamgage can be obtained from the USGS National Water Information System at https://waterdata.usgs.gov/ . The National Weather Service Advanced Hydrologic Prediction Service provides flood forecasts of stage for this site (CRAR1) at https:/water.weather.gov/ahps/ . The availability of flood-inundation maps referenced to current and forecasted water levels at the USGS Pawtuxet River at Cranston, Rhode Island, streamgage (01116500) can provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures, and postflood recovery efforts. The flood-inundation maps are nonregulatory but provide Federal, State, and local agencies and the public with estimates of the potential extent of flooding during flood events.

Rhode Island

Changes in suspended sediment concentration along tidal rivers of the Chesapeake Bay: The tidal freshwater “sediment shadow”

Transport of terrigenic sediment from nontidal watersheds into estuaries has important impacts on coastal habitat quality, pollutant transport, and resilience to sea-level rise. However, relatively little is known about changes in suspended sediment as nontidal rivers encounter tide, transition into tidal rivers through the tidal freshwater zone (TFZ), and enter saline portions of estuaries. The goal of this paper is to identify spatial and temporal patterns in suspended sediment concentration (SS) changes across tidal and salinity gradients over multiple tidal rivers, using a robust monitoring long-term dataset from the Chesapeake Bay. The multiple TFZs in the Chesapeake Bay consistently have a “sediment shadow” shown by a local spatial minimum in SS compared to upstream nontidal and downgradient oligohaline river reaches. Similarly, freshwater inputs from nontidal rivers have diminishing influence on tidal SS temporal dynamics with distance downstream from the head-of-tide. Therefore, little of the contemporary watershed sediment load is likely transported past the TFZ except during extreme floods when some sediment may be delivered to saline portions of the estuary. Tidal freshwater and brackish portions of the estuary have spatially variable trends in SS over time, both increases and decreases. However, the more saline downstream ends of tidal rivers and the mainstem of the Chesapeake Bay have had a consistent average 25% decline in SS over the past decades. In summary, the presence of “sediment shadows” suggests watershed loads of sediment are currently mostly not transported through the TFZ into the saline estuary, and likely generate sediment deficits for tidal freshwater wetlands.

Delaware, Maryland, Pennsylvania

Diagenetic fate of organic contaminants on the Palos Verdes Shelf, California

Municipal wastes discharged through deepwater submarine outfalls since 1937 have contaminated sediments of the Palos Verdes Shelf. A site approximately 6–8 km downcurrent from the outfall system was chosen for a study of the diagenetic fate of organic contaminants in the waste-impacted sediments. Concentrations of three classes of hydrophobic organic contaminants (DDT+metabolites, polychlorinated biphenyls (PCBs), and the long-chain alkylbenzenes) were determined in sediment cores collected at the study site in 1981 and 1992. Differences between the composition of effluent from the major source of DDT (Montrose Chemical) and that found in sediments suggests that parent DDT was transformed by hydrolytic dehydrochlorination during the earliest stages of diagenesis. As a result, p , p ′-DDE is the dominant DDT metabolite found in shelf sediments, comprising 60–70% of ΣDDT. The p , p -DDE/ p , p ′-DDMU concentration ratio decreases with increasing sub-bottom depth in sediment cores, indicating that reductive dechlorination of p , p ′-DDE is occurring. Approximately 9–23% of the DDE inventory in the sediments may have been converted to DDMU since DDT discharges began ca. 1953. At most, this is less than half of the decline in p , p ′-DDE inventory that has been observed at the study site for the period 1981–1995. Most of the observed decrease is attributable to remobilization by processes such as sediment mixing coupled to resuspension, contaminant desorption, and current advection. Existing field data suggest that the in situ rate of DDE transformation is 10 2 –10 3 times slower than rates determined in recent laboratory microcosm experiments (Quensen, J.F., Mueller, S.A., Jain, M.K., Tiedje, J.M., 1998. Reductive dechlorination of DDE to DDMU in marine sediment microcosms. Science, 280, 722–724.). This explains why the DDT composition (i.e. o , p ′-, p , p ′-isomers of DDE, DDD, DDT) of sediments from this site have not changed significantly since at least 1972. Congener-specific PCB compositions in shelf sediments are highly uniform and show no evidence of diagenetic transformation. Apparently, the agents/factors responsible for reductive dechlorination of DDE are not also effecting alteration of the PCBs. Two types of long-chain alkylbenzenes were found in the contaminated sediments. Comparison of chain length and isomer distributions of the linear alkylbenzenes in wastewater effluent and surficial sediment samples indicate that these compounds undergo biodegradation during sedimentation. Further degradation of the linear alkylbenzenes occurs after burial despite relatively invariant isomer compositions. The branched alkylbenzenes are much more persistent than the linear alkylbenzenes, presumably due to extensive branching of the alkyl side chain. Based on these results, p , p ′-DDE, PCBs, and selected branched alkylbenzenes are sufficiently persistent for use in molecular stratigraphy. The linear alkylbenzenes may also provide information on depositional processes. However, their application as quantitative molecular tracers should be approached with caution.

California

Risk analysis for biological hazards: What we need to know about invasive species

Risk analysis for biological invasions is similar to other types of natural and human hazards. For example, risk analysis for chemical spills requires the evaluation of basic information on where a spill occurs; exposure level and toxicity of the chemical agent; knowledge of the physical processes involved in its rate and direction of spread; and potential impacts to the environment, economy, and human health relative to containment costs. Unlike typical chemical spills, biological invasions can have long lag times from introduction and establishment to successful invasion, they reproduce, and they can spread rapidly by physical and biological processes. We use a risk analysis framework to suggest a general strategy for risk analysis for invasive species and invaded habitats. It requires: (1) problem formation (scoping the problem, defining assessment endpoints); (2) analysis (information on species traits, matching species traits to suitable habitats, estimating exposure, surveys of current distribution and abundance); (3) risk characterization (understanding of data completeness, estimates of the “potential” distribution and abundance; estimates of the potential rate of spread; and probable risks, impacts, and costs); and (4) risk management (containment potential, costs, and opportunity costs; legal mandates and social considerations and information science and technology needs).

Risk Analysis

Turbidity-current channels in Queen Inlet, Glacier Bay, Alaska

Queen Inlet is unique among Glacier Bay fjords because it alone has a branching channel system incised in the Holocene sediment fill of the fjord floor. Bathymetry and seismic-reflection profiles show that four channels begin on, or at the base of, the delta front of this marine-outwash fjord. By midpoint of the fjord, these channels have merged into one main channel that extends the length of the fjord. The main channel cuts deeply into the scarp that separates this hanging tributary from the West Arm of Glacier Bay. The Queen Inlet channel ends on the main fjord floor as several small distributaries that form part of a lobate-fan deposit. Sand from the channel and lobate fan, in contrast to fjord-floor mud, plus steep truncated channel walls indicate that turbidity currents created this apparently active channel system. Queen Inlet and other known channel-containing fjords are marine-outwash fjords; the tidewater glacial fjords do not have steep delta fronts on which slides are generated and may not have a sufficient reservoir of potentially unstable coarse sediment to generate channel-cutting turbidity currents. Presence or absence of channels, as revealed in the ancient rock record, may be one criterion for interpreting types of fjords.

Alaska

Distribution and conservation status of coastal sage scrub in southwestern California

A landscape-based characterization of vegetation has been developed for southwestern California using satellite imagery, air photos, existing vegetation maps, and field data. Distribution maps of nine dominant coastal scrub species and 13 species assemblages that were identified by divisive information analysis have been analyzed to quantify spatial patterns of species co-occurrence. Three general distribution patterns are identified that suggest the Diegan, Ventaran and Riversidian Associations identified by other workers. Vegetation data have also been related to land ownership and management to assess the conservation status of upland plant communities. A large proportion of the mapped distribution of species and vegetation types is on private land, and several taxa show less than 4 % of mapped distribution in nature reserves. The analysis highlights the need to extend current conservation planning efforts into the northern part of the region to encompass areas where Salvia leucophylla is a frequent community dominant.

Journal of Vegetation Science

Water Resources Research October 1, 1979 - September 30, 1980: Summary statements of research activities by the Water Resources Division

Research in the WRD had its beginnings in the late 1950's when the "core research" line item was added to the Congressional budget. Since this time the Federal program has grown from a "basic sciences" program to one that includes a broad spectrum of basic and applied scientific investigations. Water resources research in WRD includes the study of water in all its phases and uses the basic sciences of mathematics, chemistry, physics, biology, geology and engineering to gain a fundamental understanding of the processes that affect the movement of water and its chemical constituents through hydrologic systems. The basic knowledge and methodologies derived from water resources research are applicable not only to the solution of current problems associated with the Nation's water resources, but also to anticipated hydrologic issues.

Report

Science plan for improving three-dimensional seismic velocity models in the San Francisco Bay region, 2019–24

This five-year science plan outlines short-term and long-term goals for improving three-dimensional seismic velocity models in the greater San Francisco Bay region as well as how to foster a community effort in reaching those goals. The short-term goals focus on improving the current U.S. Geological Survey San Francisco Bay region geologic and seismic velocity model using existing data. The long-term goals focus on acquiring new data and leveraging better analytic tools to improve the model and characterize the uncertainty. The plan describes opportunities for contributions by members of the community to develop these seismic velocity models, provides current and potential users with general information on where efforts will likely be focused to improve these models and how new versions of the models will be released, and outlines funding needs and obstacles for improving and maintaining such models. Several aspects of this plan, including how to foster a community effort, are independent of the geographic region and apply to other similar efforts.

California

Flood-inundation maps for Peachtree Creek from the Norfolk Southern Railway bridge to the Moores Mill Road NW bridge, Atlanta, Georgia

Digital flood-inundation maps for a 5.5-mile reach of the Peachtree Creek from the Norfolk Southern Railway bridge to the Moores Mill Road NW bridge, were developed by the U.S. Geological Survey (USGS) in cooperation with the City of Atlanta, Georgia. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage at Peachtree Creek at Atlanta, Georgia (02336300) and the USGS streamgage at Chattahoochee River at Georgia 280, near Atlanta, Georgia (02336490). Current water level (stage) at these USGS streamgages may be obtained at http://waterdata.usgs.gov/ and can be used in conjunction with these maps to estimate near real-time areas of inundation. The National Weather Service (NWS) is incorporating results from this study into the Advanced Hydrologic Prediction Service (AHPS) flood warning system (http:/water.weather.gov/ahps/). The NWS forecasts flood hydrographs at many places that commonly are collocated at USGS streamgages. The forecasted peak-stage information for the USGS streamgage at Peachtree Creek, which is available through the AHPS Web site, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. A one-dimensional step-backwater model was developed using the U.S. Army Corps of Engineers HEC–RAS software for a 6.5-mile reach of Peachtree Creek and was used to compute flood profiles for a 5.5-mile reach of the creek. The model was calibrated using the most current stage-discharge relations at the Peachtree Creek at Atlanta, Georgia, streamgage (02336300), and the Chattahoochee River at Georgia 280, near Atlanta, Georgia, streamgage (02336490) as well as high water marks collected during the 2010 annual peak flow event. The hydraulic model was then used to determine 50 water-surface profiles. The profiles are for 10 flood stages at the Peachtree Creek streamgage at 1-foot intervals referenced to the streamgage datum and ranging from just above bankfull stage (15.0 feet) to approximately the highest recorded water level at the streamgage (24.0 feet). At each stage on Peachtree Creek, five stages at the Chattahoochee River streamgage, from 26.4 feet to 38.4 feet in 3-foot intervals, were used to determine backwater effects. The simulated water-surface profiles were then combined with a geographic information system digital elevation model—derived from Light Detection and Ranging (LiDAR) data having a 0.3-foot vertical and 16.4-foot horizontal resolution—to delineate the area flooded for each 1-foot increment of stream stage. The availability of these maps, when combined with real-time information regarding current stage from USGS streamgages and forecasted stream stages from the NWS, provide emergency management personnel and residents with critical information during flood response activities, such as evacuations and road closures as well as for postflood-recovery efforts.

Georgia