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At least 559 records · Page 31Linked to original sources
USGS2007

Bleaching increases likelihood of disease on Acropora palmatao (Lamarck) in Hawksnest Bay, St John, US Virgin Islands

Anomalously high water temperatures may enhance the likelihood of coral disease outbreaks by increasing the abundance or virulence of pathogens, or by increasing host susceptibility. This study tested the compromised-host hypothesis, and documented the relationship between disease and temperature, through monthly monitoring of Acropora palmata colonies from May 2004 to December 2006, in Hawksnest Bay, St John, US Virgin Islands (USVI). Disease prevalence and the rate of change in prevalence showed a positive linear relationship with water temperature and rate of change in water temperature, respectively, but only in 2005 during prolonged periods of elevated temperature. Both bleached and unbleached colonies showed a positive relationship between disease prevalence and temperature in 2005, but the average area of disease-associated mortality increased only for bleached corals, indicating host susceptibility, rather than temperature per se, influenced disease severity on A. palmata .

Virgin Islands↗
USGS2008

Overgrowth of fungi (endolithic hypermycosis) associated with multifocal to diffuse distinct amorphous dark discoloration of corals in the Indo-Pacific

Coral disease surveys in American Samoa and Hawai‘i revealed colonies with a distinct dark discoloration affecting 20–60% of the colony surface (Fig. 1 a). In some cases, tissue loss with algal infiltration was present within discolored areas. On microscopy, these lesions had marked overgrowth of the coral skeleton and tissues with septate branching structures that stained positive with Grocott’s Methenamine Silver (fungal hyphae) accompanied by necrosis and fragmentation of coral tissues (Fig. 1 b). We have observed this condition grossly and microscopically in Pavona varians , Psammocora nierstraszi , and Montipora sp. in American Samoa and in Pavona maldivensis and P. varians in Hawai‘i. This condition resembles Dark Spots Disease from the Caribbean (Solano et al. 1993 ) that also shows endolithic hypermycosis (Galloway et al. 2007 ), suggesting that the association between dark discoloration of corals and overgrowth of endolithic fungi may be common (Western Atlantic, Indo-Pacific). Based on gross and microscopic morphology, tissue atrophy may precede overgrowth of endolithic fungi, but this awaits confirmation through systematic studies that monitor the development of lesions over time (pathogenesis). Using standardized terminology (Work and Aeby 2006 ) to describe lesions facilitates regional comparisons of coral disease.

Hawai'i↗
USGS2010

Geomorphology of mesophotic coral ecosystems: Current perspectives on morphology, distribution, and mapping strategies

This paper presents a general review of the distribution of mesophotic coral ecosystems (MCEs) in relationship to geomorphology in US waters. It was specifically concerned with the depth range of 30–100 m, where more than 186,000 km2 of potential seafloor area was identified within the US Gulf of Mexico/Florida, Caribbean, and main Hawaiian Islands. The geomorphology of MCEs was largely inherited from a variety of pre-existing structures of highly diverse origins, which, in combination with environmental stress and physical controls, restrict the distribution of MCEs. Sea-level history, along with depositional and erosional processes, played an integral role in formation of MCE settings. However, mapping the distribution of both potential MCE topography/substrate and existing MCE habitat is only beginning. Mapping techniques pertinent to understanding morphology and MCE distributions are discussed throughout this paper. Future investigations need to consider more cost-effective and remote methods (such as autonomous underwater vehicles (AUVs) and acoustics) in order to assess the distribution and extent of MCE habitat. Some understanding of the history of known MCEs through coring studies would help understand their initiation and response to environmental change over time, essential for assessing how they may be impacted by future environmental change.

Alabama, Florida, Georgia, Hawai'i, Louisiana, Mis↗
USGS2010

Theme section on “Mesophotic coral ecosystems: Characterization, ecology, and management”

Mesophotic coral ecosystems (MCEs) are characterized by the presence of light-dependent corals and associated communities that are typically found at depths ranging from 30 to 40 m and extending to over 150 m in tropical and subtropical regions. The dominant communities providing structural habitat in the mesophotic zone can be comprised of coral, sponge, and algal species. Because working in this depth range is constrained by traditional SCUBA limits, less is known about corals and associated organisms there compared to shallower coral communities. Following the first-ever gathering of international scientists to review and discuss existing knowledge of MCEs, this issue focuses on the ecological characterization, geomorphology, and concept of MCEs as refugia for shallow-water populations. The review and research papers comprising this special issue reflect the current scientific understanding of these ecosystems and the underlying mechanisms that regulate them, as well as potential resource management implications. It is important to understand the value and role of mesophotic coral ecosystems in tropical and subtropical regions as these areas face increasing environmental change and human impacts

Coral Reefs↗
USGS2011

Coral skeletal carbon isotopes (δ 13 C and Δ 14 C) record the delivery of terrestrial carbon to the coastal waters of Puerto Rico

Tropical small mountainous rivers deliver a poorly quantified, but potentially significant, amount of carbon to the world’s oceans. However, few historical records of land–ocean carbon transfer exist for any region on Earth. Corals have the potential to provide such records, because they draw on dissolved inorganic carbon (DIC) for calcification. In temperate systems, the stable- (δ 13 C) and radiocarbon (Δ 14 C) isotopes of coastal DIC are influenced by the δ 13 C and Δ 14 C of the DIC transported from adjacent rivers. A similar pattern should exist in tropical coastal DIC and hence coral skeletons. Here, δ 13 C and Δ 14 C measurements were made in a 56-year-old Montastraea faveolata coral growing ~1 km from the mouth of the Rio Fajardo in eastern Puerto Rico. Additionally, the δ 13 C and Δ 14 C values of the DIC of the Rio Fajardo and its adjacent coastal waters were measured during two wet and dry seasons. Three major findings were observed: (1) synchronous depletions of both δ 13 C and Δ 14 C in the coral skeleton are annually coherent with the timing of peak river discharge, (2) riverine DIC was always more depleted in δ 13 C and Δ 14 C than seawater DIC, and (3) the correlation of δ 13 C and Δ 14 C was the same in both coral skeleton and the DIC of the river and coastal waters. These results indicate that coral skeletal δ 13 C and Δ 14 C are recording the delivery of riverine DIC to the coastal ocean. Thus, coral records could be used to develop proxies of historical land–ocean carbon flux for many tropical regions. Such information could be invaluable for understanding the role of tropical land–ocean carbon flux in the context of land-use change and global climate change.

Puerto Rico↗
USGS2020

7700-year persistence of an isolated, free-living coral assemblage in the Galápagos Islands: A model for coral refugia?

In an eastern-Pacific coral assemblage at Devil’s Crown, Galápagos Islands, Ecuador, two coral species, Psammocora stellata and Cycloseris (Diaseris) distorta, form dense populations of unattached colonies on sand and rubble substrata. In the Galápagos, living C. (D.) distorta is found only at this single site, whereas populations of P. stellata are found throughout the archipelago. Six cores dating to 7700 yBP showed P. stellata to be dominant throughout the history of this isolated community, but C. (D.) distorta increased in abundance from ~2200 yBP and reached peak abundance between 1471 yBP and the present. The relative frequency of the two coral species may be linked to millennial-scale climatic variability, and this site may represent a refuge for C. (D.) distorta from unfavorable climatic fluctuations on millennial timescales. Our results demonstrate that some corals can persist in isolated populations for millennia.

Galápagos Islands↗
USGS2021

Identifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics

Coral growth anomalies (GAs) are tumor-like protrusions that are detrimental to coral health, affecting both the coral skeleton and soft tissues. These lesions are increasingly found throughout the tropics and are commonly associated with high human population density, yet little is known about the molecular pathology of the disease. Here, we investigate the metabolic impacts of GAs through 1 H nuclear magnetic resonance (NMR) metabolomics in Porites compressa tissues from a site of high disease prevalence (Coconut Island, Hawaii). We putatively identified 18 metabolites (8.1% of total annotated features) through complementary 1 H and 1 H– 13 C heteronuclear single quantum correlation NMR data that increase confidence in pathway analyses and may bolster future coral metabolite annotation efforts. Extract yield was elevated in both GA and unaffected (normal tissue from a diseased colony) compared to reference (normal tissue from GA-free colony) samples, potentially indicating elevated metabolic activity in GA-impacted colonies. Relatively high variation in metabolomic profiles among coral samples of the same treatment (i.e., inter-colony variation) confounded data interpretation, however, analyses of paired GA and unaffected samples identified 73 features that differed between these respective metabolome types. These features were largely annotated as unknowns, but 1-methylnicotinamide and trigonelline were found to be elevated in GA samples, while betaine, glycine, and histamine were lower in GA samples. Pathway analyses indicate decreased choline oxidation in GA samples, making this a pathway of interest for future targeted studies. Collectively, our results provide unique insights into GA pathophysiology by showing these lesions alter both the absolute and relative metabolism of affected colonies and by identifying features (metabolites and unknowns) and metabolic pathways of interest in GA pathophysiology going forward.

Coral Reefs↗
USGS2023

Functional gene composition and metabolic potential of deep-sea coral-associated microbial communities

Over the past decade, an abundance of 16S rRNA gene surveys have provided microbiologists with data regarding the prokaryotes present in a coral-associated microbial community. Functional gene studies that provide information regarding what those microbes might do are fewer, particularly for non-tropical corals. Using the GeoChip 5.0S microarray, we present a functional gene study of microbiomes from five species of cold-water corals collected from depths of 296–1567 m. These species included two octocorals, Acanthogorgia aspera and Acanthogorgia spissa , and three stony corals: Desmophyllum dianthus , Desmophyllum pertusum (formerly Lophelia pertusa ), and Enallopsammia profunda . A total of 24,281 gene sequences (representing different microbial taxa) encoding for 383 functional gene families and representing 9 metabolic gene categories were identified. Gene categories included metabolism of carbon, nitrogen, phosphorus, and sulfur, as well as virulence, organic remediation, metal homeostasis, secondary metabolism and phylogeny. We found that microbiomes from Acanthogorgia spp. were the most functionally distinct but also least diverse compared against those from stony corals. Desmophyllum spp. microbiomes were more similar to each other than to E. profunda . Of 383 total gene families detected in this study, less than 20% were significantly different among these deep-water coral species. Similarly, out of 59 metabolic sub-categories for which we were able to make a direct comparison to microbiomes of tropical corals, only 7 were notably different: anaerobic ammonium oxidation (anammox), chitin degradation, and dimethylsulfoniopropionate (DMSP) degradation, all of which had higher representations in deep-water corals; and chromium homeostasis/resistance, copper homeostasis/resistance, antibiotic resistance, and methanogenesis, all of which had higher representation in tropical corals. This implies a broad-scale convergence of the microbial functional genes present within the coral holobiont, independent of coral species, depth, symbiont status, and morphology.

Coral Reefs↗
USGS2024

Pathology of lesions in corals from the US Virgin Islands after emergence of stony coral tissue loss disease

Stony coral tissue loss disease (SCTLD) was first documented in Florida in 2014 and has since spread through the Caribbean causing unprecedented mortality in more than 20 species of corals. The cause of SCTLD is unknown, but bacteria are suspected based on regression of gross lesions in some corals treated with antibiotics. Limited pathology studies on SCTLD exist, but it is likely that ‘SCTLD’ is a general term encompassing tissue loss disease of unexplained origin. Here, we examined pathology of lesions in corals from the US Virgin Islands where SCTLD has recently emerged. The typical histologic lesion of SCTLD in Florida corals was lytic necrosis comprising vacuolation and necrosis of mucus cells with erosion of mesoglea and misshapen endosymbionts with variably sized intracytoplasmic granules and common occurrence of filamentous viral-like particles in endosymbionts visible on electron microscopy (EM). In contrast, USVI corals had mainly lytic mucus cell hypertrophy and necrosis with no involvement of mesoglea, endosymbiont pathology at the light microscopy level was less evident, and VLP were rarely seen on EM. We suspect SCTLD is likely more complex with multiple presentations and potential etiologies depending on geographic region. Further pathological studies from other regions might help refine the case definition of SCTLD.

St. John↗
USGS2025

Complex sound scattering layer and water-column dynamics over a mesophotic coral ecosystem: Southwest Puerto Rico, U.S.A.

A nearly 5-month record of high-resolution temperature and acoustic backscatter profiles from the upper insular slope off southwest Puerto Rico reveals complex sound scattering layer (SSL) dynamics over a mesophotic coral ecosystem (MCE). The SSLs exhibited both diel and reverse diel vertical migration, thin layer (< 5 m) and multiple layer formations, depth modulation due to internal waves, and vertical layering in the absence of water column stratification. The long-term observations also capture SSL and water column dynamics across changing seasons and two category five hurricanes, Irma and María. The SSLs, likely comprosed of zooplankton, represent an important food source for both the sessile ( e.g. , corals and sponges) and mobile ( e.g. , fish) MCE taxa, and their effective vertical mobility underscores their importance to trophic connectivity between the upper and lower slope MCEs, as well as the shelf. Our results also underscore the challenges in adequately resolving zooplankton aggregations using conventional sampling techniques.

Puerto Rico↗
USGS1998

The Holocene sea-level highstand in the equatorial Pacific: Analysis of the insular paleosea-level database

A review of the literature provides 92 estimates of the middle to late Holocene sea-level highstand on Pacific Islands. These data generally support geophysical model calculations that predict a +1 to 3 m relative sea-level highstand on oceanic islands due to the Earth’s rheological response to the melting of the last continental ice sheets and subsequent redistribution of meltwater. Both predictions and observations indicate sea level was higher than present in the equatorial Pacific between 5000 and 1500 y B.P. A non-linear relationship exists between the age and elevation of the highstand peak, suggesting that different rates of isostatic adjustment may occur in the Pacific, with the highest rates of sea-level fall following the highstand near the equator. It is important to resolve detailed sea-level histories from insular sites to test and refine models of climatic, oceanographic, and geophysical processes including hydroisostasy, equatorial ocean siphoning, and lithospheric flexure that are invoked as mechanisms affecting relative sea-level position. We use a select subset of the available database meeting specific criteria to examine model relationships of paleosea-surface topography. This new evaluated database of paleosea-level positions is also validated for testing and constraining geophysical model predictions of past and present sea-level variations.

Coral Reefs↗
USGS2011

The influence of sea-level rise on fringing reef sediment dynamics: field observations and numerical modeling

While most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100, it is not clear how fluid flow and sediment transport on fringing reefs might change in response to this rapid sea-level rise. Field observations and numerical modeling suggest that an increase in water depth on the order of 0.5-1.0 m on a fringing reef flat would result in larger significant wave heights and wave-driven shear stresses, which, in turn, would result in an increase in both the size and quantity of sediment that can be resuspended from the seabed or eroded from coastal plain deposits. Greater wave- and wind-driven currents would develop on the reef flat with increasing water depth, increasing the offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest.

Hawai'i↗
USGS1980

Porosity evolution of upper Miocene reefs, Almeria Province, southern Spain

Sea cliffs 40 km east of Almeria, southeastern Spain, expose upper Miocene reefs and patch reefs of the Plomo formation. These reefs are formed of scleractinian corals, calcareous algae, and mollusks. The reef cores are as much as 65 m thick and several hundred meters wide. Fore-reef talus beds extend 1,300 m across and are 40 m thick. The reefs and reef breccias are composed of calcitic dolomite. They lie on volcanic rocks that have a K-Ar date of 11.5 m.y. and in turn are overlain by the upper Miocene Vicar Formation. In the reef cores and fore-reef breccia beds, porosity is both primary and postdepositional. Primary porosity is of three types: (a) boring clam holes in the scleractinian coral heads, cemented reef rocks, and breccias; (b) intraparticle porosity within the corals, Halimeda plates, and vermetid worm tubes; and (c) interparticle porosity between bioclastic fragments and in the reef breccia. Postdepositional moldic porosity was formed by the solution of aragonitic material such as molluscan and coral fragments. The Plomo reef carbonate rocks have high porosity and permeability, and retain a great amount of depositional porosity. Pores range in size from a few micrometers to 30 cm. The extensive intercrystalline porosity and high permeability resulted from dolomitization of micritic matrix. Dolomite rhombs are between 10 and 30 µ across. More moldic porosity was formed by the dissolution of the calcite bioclasts. Some porosity reduction has occurred by incomplete and partial sparry calcite infilling of interparticular, moldic, and intercrystalline voids. The high porosity and permeability of these reefs make them important targets for petroleum exploration in the western Mediterranean off southern Spain. In these offshore areas in the subsurface the volcanic ridge and the Plomo reef complex are locally onlapped or overlapped by 350 m or more of Miocene(?) and Pliocene fine-grained sedimentary rocks. The possibility exists that the buried Plomo reef deposits may form traps for oil and gas in the offshore areas southwest of the type locality. Stratigraphic traps also may occur where the Neogene sequence above the Plomo reef complex onlaps the volcanic ridge.

Almeria Province↗
USGS2015

Assessing threats from coral and crustose coralline algae disease on the reefs of New Caledonia

The present study reports the results of the first quantitative survey of lesions on coral and crustose coralline algae (CCA) on reefs in the lagoon of New Caledonia. Surveys on inshore and offshore reefs were conducted at 13 sites in 2010, with 12 sites resurveyed in 2013. Thirty coral diseases affecting 15 coral genera were found, with low overall disease prevalence (<1%). This study extends the known distribution of growth anomalies to the coral genera Platygyra and Hydnophora , endolithic hypermycosis to Platygyra , Leptoria and Goniastrea and extends the geographic range of three CCA diseases. We found the first trematode infection in Porites outside of Hawaii. Disease prevalence differed among coral genera, with Porites having more lesions, and Acropora and Montipora fewer lesions, than expected on the basis of field abundance. Inshore reefs had a lower coral-colony density, species diversity and reduced CCA cover than did the offshore reefs. Disease prevalence was significantly higher on inshore reefs in 2013 than in 2010, but did not change on offshore reefs. The potential ecological impact of individual coral diseases was assessed using an integrative-scoring and relative-ranking scheme based on average frequency of occurrence, prevalence and estimated degree of virulence. The top-five ranked diseases were all tissue-loss diseases.

Marine and Freshwater Research↗
USGS1992

Geochronology and subsurface stratigraphy of Pukapuka and Rakahanga atolls, Cook Islands: Late Quaternary reef growth and sea level history

Eustatic sea-level cycles superposed on thermal subsidence of an atoll produce layers of high sea-level reefs separated by erosional unconformities. Coral samples from these reefs from cores drilled to 50 m beneath the lagoons of Pukapuka and Rakahanga atolls, northern Cook Islands give electron spin resonance (ESR) and U-series ages ranging from the Holocene to 600,000 yr B.P. Subgroups of these ages and the stratigraphic position of their bounding unconformities define at least 5 periods of reef growth and high sea-level (0–9000 yr B.P., 125,000–180,000 yr B.P., 180,000–230,000 yr B.P., 300,000–460,000 yr B.P., 460,000–650,000 yr B.P.). Only two ages fall within error of the last interglacial high sea-level stand (∼125,000–135,000 yr B.P.). This paucity of ages may result from extensive erosion of the last intergracial reef. In addition, post-depositional isotope exchange may have altered the time ages of three coral samples to apparent ages that fall within glacial stage 6. For the record to be preserved, vertical accretion during rising sea-level must compensate for surface lowering from erosion during sea-level lowstands and subsidence of the atoll; erosion rates (6–63 cm/1000 yr) can therefore be calculated from reef accretion rates (100–400 cm/1000 yr), subsidence rates (2–6 cm/1000 yr), and the duration of island submergence (8–15% of the last 600,000 yr). The stratigraphy of coral ages indicates island subsidence rates of 4.5 ± 2.8 cm/1000 yr for both islands. A model of reef growth and erosion based on the stratigraphy of the Cook Islands atolls suggests average subsidence and erosion rates of between 3–6 and 15–20 cm/1000 yr, respectively.

Palaeogeography, Palaeoclimatology, Palaeoecology↗
USGS2021

Genetic structure and diversity of the mustard hill coral Porites astreoides along the Florida Keys reef tract

Increases in local and global stressors have led to major declines in coral populations throughout the western Atlantic. While abundances of other species have declined, however, the relative abundance of the mustard hill coral, Porites astreoides , has increased. Porites astreoides is relatively resilient to some stressors, and because of its mixed reproductive strategies, its populations often recover quickly following disturbances. The ability for P. astreoides to continue as a potential “winner” in western Atlantic reefs relies on maintaining sufficient genetic variation within populations to support acclimatization and adaptation to current and future environmental change. Without high genetic diversity and gene flow within the population, it would have limited capacity for adaptation and the species’ competitive advantages could be short-lived. In this study, we determined the genetic relatedness of 37 P. astreoides colonies at four shallow reefs along the offshore Florida Keys Reef Tract (FKRT), a region particularly hard-hit by recent disturbances. Using previously designed microsatellite markers, we determined the genetic diversity and connectivity of individuals among and between sites. Our results suggest that the FKRT likely contains a single, well-mixed genetic population of P. astreoides , with high levels of gene flow and evidence for larval migration throughout the region. This suggests that regional populations of P. astreoides likely have a higher chance of maintaining resilience than many other western Atlantic species as they face current and future disturbances.

Florida↗
USGS2016

End of the chain? Rugosity and fine-scale bathymetry from existing underwater digital imagery using structure-from-motion (SfM) technology

The rugosity or complexity of the seafloor has been shown to be an important ecological parameter for fish, algae, and corals. Historically, rugosity has been measured either using simple and subjective manual methods such as &lsquo;chain-and-tape&rsquo; or complicated and expensive geophysical methods. Here, we demonstrate the application of structure-from-motion (SfM) photogrammetry to generate high-resolution, three-dimensional bathymetric models of a fringing reef from existing underwater video collected to characterize the seafloor. SfM techniques are capable of achieving spatial resolution that can be orders of magnitude greater than large-scale lidar and sonar mapping of coral reef ecosystems. The resulting data provide finer-scale measurements of bathymetry and rugosity that are more applicable to ecological studies of coral reefs than provided by the more expensive and time-consuming geophysical methods. Utilizing SfM techniques for characterizing the benthic habitat proved to be more effective and quantitatively powerful than conventional methods and thus might portend the end of the &lsquo;chain-and-tape&rsquo; method for measuring benthic complexity.

Coral Reefs↗