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USGS2008

Spatial and temporal trends in nitrate concentrations in the eastern San Joaquin Valley regional aquifer and implications for fertilizer management

Ground-water withdrawals in the San Joaquin Valley totaled 64 million m 3 /day (19 million ac-ft) in 2000, supplying about 45% of agricultural irrigation demand and about 80% of municipal supply (Hutson et al., 2004). Most of the population and ground-water use are in the eastern San Joaquin Valley, where reliance on ground water is expected to increase as a result of rapid population growth and limited surface water supplies. Protection of ground-water quality for future use requires monitoring and understanding the mechanisms controlling the long-term quality of ground water in the regional aquifer system. Nitrate has been widely detected above background concentrations in ground water in the eastern San Joaquin Valley. Nitrate concentrations (reported as nitrogen in this paper) were above the MCL of 10 mg/L in 24% of domestic wells screened in the shallow part of the aquifer that were sampled during 1993–95 (Dubrovsky et al., 1998) and the Central Valley is one of the top three regions in the state in terms of the number of public drinking-water wells exceeding the MCL for nitrate (California State Water Resources Control Board, 2002). To assess spatial and temporal trends in nitrate concentrations in the eastern San Joaquin Valley and to evaluate the long-term effects of nitrogen fertilizer use on ground-water quality in this region, data were evaluated at multiple spatial scales. Data from regional-scale monitoring networks were used to map the regional occurrence of nitrate and to determine whether shallow ground water containing elevated nitrate is migrating to deeper parts of the aquifer system. At the local scale, mean ground-water ages from analysis of age-dating tracers were combined with concentrations of nitrate to reconstruct nitrate inputs in recharge through time and to compare with estimated nitrogen applications. Ground-water flow and transport simulations of a typical public-supply well screened from about 100 to 400 ft below the water table were used to evaluate long-term concentrations beneath agricultural areas under different nitrogen management scenarios.

California↗

USGS2007

Chemical contaminants, health indicators, and reproductive biomarker responses in fish from the Colorado River and its tributaries

Common carp (Cyprinus carpio), black bass (Micropterus spp.), and channel catfish (Ictalurus punctatus) were collected from 14 sites in the Colorado River Basin (CRB) to document spatial trends in accumulative contaminants, health indicators, and reproductive biomarkers. Organochlorine residues, 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ), and elemental contaminants were measured in composite samples of whole fish, grouped by species and gender, from each site. Selenium (Se) and mercury (Hg) concentrations in fish were elevated throughout the CRB, and pesticide concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (> 1.0????g/g ww) at all CRB sites except the Gila River at Hayden, Arizona. Mercury concentrations were elevated (> 0.1????g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p???-DDE were relatively high in fish from the Gila River at Arlington, Arizona (> 1.0????g/g ww) and Phoenix, Arizona (> 0.5????g/g ww). Concentrations of other formerly used pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Currently used pesticides such as Dacthal, endosulfan, ??-HCH, and methoxychlor were also greatest in fish from the Gila River downstream of Phoenix. Total polychlorinated biphenyls (PCBs; > 0.11????g/g ww) and TCDD-EQs (> 5??pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix and in bass from the Green River at Ouray NWR. Fish from some sites showed evidence of contaminant exposure as indicated by fish health indicators and reproductive biomarker results. Multiple health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Intersex fish were found at seven of 14 sites and included smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), catfish, and carp and may indicate exposure to endocrine disrupting compounds. A high proportion of smallmouth bass from the Yampa River at Lay (70%) was intersex but the cause of this condition is unknown. Male carp, bass, and catfish with low concentrations of vitellogenin were common in the CRB. Comparatively high vitellogenin concentrations (> 0.2??mg/mL) were measured in male bass from the Green River at Ouray NWR and the Colorado River at Imperial Dam and indicate exposure to estrogenic or anti-androgenic chemicals. Anomalous reproductive biomarkers including low GSI and gonadal abnormalities (calcifications, edema, and parasites) observed in fish downstream of Phoenix are likely related to the poor water-quality of the Gila River in this area.

Colorado River Basin↗

USGS2006

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants, health indicators, and reproductive biomarkers in fish from the Colorado River basin

Seven fish species were collected from 14 sites on rivers in the Colorado River Basin (CDRB) from August to October 2003. Spatial trends in the concentrations of accumulative contaminants were documented and contaminant effects on the fish were assessed. Sites were located on the mainstem of the Colorado River and on the Yampa, Green, Gunnison, San Juan, and Gila Rivers. Common carp (Cyprinus carpio), black bass (Micropterus sp.), and channel catfish (Ictalurus punctatus) were the targeted species. Fish were field-examined for external and internal anomalies, selected organs were weighed to compute somatic indices, and tissue and fluid samples were preserved for fish health and reproductive biomarker analyses. Composite samples of whole fish, grouped by species and gender, from each site were analyzed for organochlorine and elemental contaminants using performance-based and instrumental methods. 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ) was measured using the H4IIE rat hepatoma cell bioassay. Selenium (Se) and mercury (Hg) concentrations were elevated throughout the CDRB, and pesticides concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (>1.0 ?g/g ww) at all sites except from the Gila River at Hayden, Arizona. Mercury concentrations were elevated (>0.1 ?g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p'-DDE were relatively high in fish from Arlington, Arizona (>1.0 ?g/g ww) and Phoenix, Arizona (>0.5 ?g/g ww). Concentrations of other banned pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Current-use or unlisted pesticides such as dacthal, endosulfan, '-HCH, and methoxychlor were also greatest in fish from Gila River. Total polychlorinated biphenyls (PCBs; >0.11 ?g/g ww) and TCDD-EQs (>5 pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix, Arizona. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix, Arizona and in bass from the Green River at Ouray NWR, Utah. Altered biomarkers were noted in fish throughout the CDRB. Fish from some stations responded to chronic contaminant exposure as indicated by fish health and reproductive biomarker results. Multiple fish health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles, California. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Reproductive biomarkers including gonad development and maturation, vitellogenin concentrations, and steroid hormone concentrations were anomalous in fish from the Gila River at Hayden and Phoenix, Arizona. In addition, intersex fish were found at seven of 14 sites. The intersex condition was identified in smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), channel catfish, and carp and may indicate exposure to endocrine disrupting compounds. Seven of ten male smallmouth bass from the Yampa River at Lay, Colorado were intersex. Male carp, bass, and channel catfish with low concentrations of vitellogenin were common in the CDRB. Comparatively high vitellogenin concentrations (>0.2 mg/mL) were measured in male fish from the Green River at Ouray NWR, Utah and the Colorado River at Im

Scientific Investigations Report↗

USGS2003

Sustainable Land Use Requires Attention to Ecological Signals

This case study details the difficulties of landscape management, highlighting the challenges inherent in managing natural resources when multiple agencies are involved, when the land users have no incentive for conservation, and when government agencies have too few resources for effective management. Pumping of groundwater from the aquifer of La Costa de Hermosillo in the state of Sonora, Mexico, began in 1945 and developed so quickly that by the late 1950s salinity intrusion from the Gulf of California was occurring in the wells. In the 1970s, the irrigatable land in La Costa peaked at 132,516 ha and the extracted volume of water from the aquifer peaked at around 1.14 billion cubic meters annually. By the 1980s, 105 wells of the total of 498 were contaminated with seawater and, therefore, identified for closure. At present La Costa de Hermosillo still represents 15% of the total harvested land, 16% of the total annual production, and 23% of the gross agricultural production of the state of Sonora. However, there are approximately 80,000 ha of abandoned fields due to salt water intension, lack of water and/or lack of credit available to individual farmers. This unstable situation resulted from the interplay of water management policies and practices, and farm-land policies and practices. While government agencies have been able to enforce better water use for agricultural production, there remains a significant area that requires restoration from its degraded state. For this piece of the ecosystem management puzzle, government agencies have thus far been unable to affect a solution.

Environmental Management↗

USGS2002

Transportation impacts to wildlife on state route 37 in northern San Pablo Bay, California

State Route 37 bisects conservation lands managed by San Pablo Bay National Wildlife Refuge (U.S. Fish & Wildlife Service) and Napa-Sonoma Marshes Wildlife Area (California Department of Fish and Game) in Solano and Sonoma Counties. The 2-lane highway connects Interstates 101 and 80 in northern San Francisco Bay and experiences ~26,000 vehicles per day. Road-killed wildlife between Napa River and Tolay Creek bridges (14.7 km) were counted in 2000 to ascertain species composition, relative abundance, and relative occurrence (animal fatality interval). The primary objectives of the study were to determine if endangered salt marsh harvest mice (Reithrodontomys raviventris), California clapper rails (Rallus longirostris), or other species of concern were represented, and to collect baseline data on transportation impacts to wildlife in the area. During 51 surveys, 291 dead birds (54.6%) and mammals (45.4%) were observed. Endangered species were not positively identified dead on the highway. In total, 28 bird, 10 mammal and 1 reptile species were positively identified along this section of highway that traverses tidal marsh and diked baylands (i.e., salt ponds, seasonal wetlands, and oat-hay agriculture fields). The mean animal fatality interval for both lanes was one road-kill every 2.1km (2.1 km SD).

Transactions of the Western Section of the Wildlif↗

USGS1988

Simulated effects of ground-water management alternatives for the Salinas Valley, California

A two-dimensional digital groundwater flow model was developed to analyze the geohydrology of the groundwater basin in the Salinas Valley. The model was calibrated for steady-state and transient simulations by comparing simulated with measured or estimated inflows, outflows, and water levels for 1970-81. Preliminary estimates of hydraulic properties and some inflows and outflows were adjusted during model calibration. The simulated mean annual water budget for the basin was 559,500 acre-ft/yr each of outflow and inflow. Inflow components consisted of Salinas River recharge (38.3%), percolation of irrigation water (34.0%), small stream and Arroyo Seco recharge (20.9%), seawater intrusion (3.4%), and other sources (3.4%). Outflow components consisted of agricultural pumpage (91.5%), municipal pumpage (4.0%), and riparian phreatophyte evapotranspiration (4.5%). For the steady-state calibration, 70% of the simulated water levels were within 9 ft of measured water levels for 1970-81. A sensitivity analysis determined the overall stability of the model results. The model input variable that probably contributes most to the uncertainty of the results is the quantity of groundwater recharge contributed by irrigation-return flow to the unconfined aquifer. A 15% change in the estimate of this variable causes an 11% change in the simulated river-seepage rate and a 6% change in the simulated seawater intrusion rate. The calibrated model was used to investigate several water resources management alternatives. Projected pumpage increase at a rate of 1%/yr for 20 yr caused declines in mean annual water levels of 10 to 20 ft in some areas and an increase in seawater intrusion from 18,900 to 23 ,600 acre-ft/yr. Pumpage decreases in the coastal area decreased seawater intrusion more effectively than pumpage decreases farther inland. When pumpage was decreased uniformly throughout the valley, the decrease in seawater intrusion was only one-fourteenth the decrease in pumpage. Simulations indicated that replacement of groundwater pumpage with imported surface water in a 9,000 acre service area near the coast would result in a decrease in seawater intrusion equaling nearly one-half the quantity of imported water. (Author 's abstract)

Water-Resources Investigations Report↗

USGS1978

Water-quality investigation, Upper Santa Clara River Basin, California

Water-quality data are summarized for the upper Santa Clara River basin, California from studies beginning August 1974 through June 1976 and during past monitoring programs. Data were collected for nitrogen, phosphorus, total organic carbon, trace elements, detergents, and pesticide compounds. Because of the limited number of samples, the data are only an estimate of conditions that existed in the basin. Sampling was designed so that samples from each site would represent seasonal variations in discharge. Most constituents were fairly low in concentration near the headwaters at Ravenna and higher below the urban and agricultural area near Saugus. Mean specific conductance in the river ranged from 745 micromhos per centimeter at 25 deg C below the headwaters near Lang to 2,640 micromhos at the Los Angeles-Ventura County line. Results also indicate that discharge was not the single factor controlling the concentration variance for most constituents. Regression analyses indicated a high correlation between specific conductance and most major inorganic chemical constituents, and between specific conductance and discharge. (Woodard-USGS)

California↗

USGS2009

Biofuels, water resources and climate change: Solving the sustainability puzzle

Nebraska is now the second-largest producer of corn ethanol in the U.S. This is largely because of the state’s comparative advantages. For one, the state’s water resources enable a huge capacity for irrigation – Nebraska ranks second in irrigated crop acres, behind California. Nebraska is the third-largest corn producer in the U.S., with 75 percent of the crop irrigated. The state also produces nearly 5 million acres of soybeans, half of them irrigated. Both provide a large, dependable supply of feedstock for production of ethanol and other biofuels. Nebraska’s cattle feeding industry, with more than 4.5 million head on feed, utilizes ethanol byproducts such as distillers grains and enables biorefinery systems to attain high energy efficiency and profitability. This powerful nexus of agriculture, water and biofuels is highly vulnerable to changes in climate. The panelists represented a cross-section of these interests, including a manager of the state’s longest-operating ethanol plant, a farmer with extensive knowledge of ethanol production, the administrator of the state ethanol board and a project manager from a federal agency charged with tracking land use and its ties to biofuel production and climate change.

Nebraska↗

USGS2016

Hyperspectral narrowband and multispectral broadband indices for remote sensing of crop evapotranspiration and its components (transpiration and soil evaporation)

Evapotranspiration (ET) is an important component of micro- and macro-scale climatic processes. In agriculture, estimates of ET are frequently used to monitor droughts, schedule irrigation, and assess crop water productivity over large areas. Currently, in situ measurements of ET are difficult to scale up for regional applications, so remote sensing technology has been increasingly used to estimate crop ET. Ratio-based vegetation indices retrieved from optical remote sensing, like the Normalized Difference Vegetation Index (NDVI), Soil Adjusted Vegetation Index, and Enhanced Vegetation Index are critical components of these models, particularly for the partitioning of ET into transpiration and soil evaporation. These indices have their limitations, however, and can induce large model bias and error. In this study, micrometeorological and spectroradiometric data collected over two growing seasons in cotton, maize, and rice fields in the Central Valley of California were used to identify spectral wavelengths from 428 to 2295 nm that produced the highest correlation to and lowest error with ET, transpiration, and soil evaporation. The analysis was performed with hyperspectral narrowbands (HNBs) at 10 nm intervals and multispectral broadbands (MSBBs) commonly retrieved by Earth observation platforms. The study revealed that (1) HNB indices consistently explained more variability in ET (Δ R 2 = 0.12), transpiration (Δ R 2 = 0.17), and soil evaporation (Δ R 2 = 0.14) than MSBB indices; (2) the relationship between transpiration using the ratio-based index most commonly used for ET modeling, NDVI, was strong ( R 2 = 0.51), but the hyperspectral equivalent was superior ( R 2 = 0.68); and (3) soil evaporation was not estimated well using ratio-based indices from the literature (highest R 2 = 0.37), but could be after further evaluation, using ratio-based indices centered on 743 and 953 nm ( R 2 = 0.72) or 428 and 1518 nm ( R 2 = 0.69).

California↗

USGS2009

Hydrologic Setting and Conceptual Hydrologic Model of the Walker River Basin, West-Central Nevada

The Walker River is the main source of inflow to Walker Lake, a closed-basin lake in west-central Nevada. Between 1882 and 2008, agricultural diversions resulted in a lake-level decline of more than 150 feet and storage loss of 7,400,000 acre-ft. Evaporative concentration increased dissolved solids from 2,500 to 17,000 milligrams per liter. The increase in salinity threatens the survival of the Lahontan cutthroat trout, a native species listed as threatened under the Endangered Species Act. This report describes the hydrologic setting of the Walker River basin and a conceptual hydrologic model of the relations among streams, groundwater, and Walker Lake with emphasis on the lower Walker River basin from Wabuska to Hawthorne, Nevada. The Walker River basin is about 3,950 square miles and straddles the California-Nevada border. Most streamflow originates as snowmelt in the Sierra Nevada. Spring runoff from the Sierra Nevada typically reaches its peak during late May to early June with as much as 2,800 cubic feet per second in the Walker River near Wabuska. Typically, 3 to 4 consecutive years of below average streamflow are followed by 1 or 2 years of average or above average streamflow. Mountain ranges are comprised of consolidated rocks with low hydraulic conductivities, but consolidated rocks transmit water where fractured. Unconsolidated sediments include fluvial deposits along the active channel of the Walker River, valley floors, alluvial slopes, and a playa. Sand and gravel deposited by the Walker River likely are discontinuous strata throughout the valley floor. Thick clay strata likely were deposited in Pleistocene Lake Lahontan and are horizontally continuous, except where strata have been eroded by the Walker River. At Walker Lake, sediments mostly are clay interbedded with alluvial slope, fluvial, and deltaic deposits along the lake margins. Coarse sediments form a multilayered, confined-aquifer system that could extend several miles from the shoreline. Depth to bedrock in the lower Walker River basin ranges from about 900 to 2,000 feet. The average hydraulic conductivity of the alluvial aquifer in the lower Walker River basin is 10-30 feet per day, except where comprised of fluvial sediments. Fluvial sediments along the Walker River have an average hydraulic conductivity of 70 feet per day. Subsurface flow was estimated to be 2,700 acre-feet per year through Double Spring. Subsurface discharge to Walker Lake was estimated to be 4,400 acre-feet per year from the south and 10,400 acre-feet per year from the north. Groundwater levels and groundwater storage have declined steadily in most of Smith and Mason Valleys since 1960. Groundwater levels around Schurz, Nevada, have changed little during the past 50 years. In the Whisky Flat area south of Hawthorne, Nevada, agricultural and municipal pumpage has lowered groundwater levels since 1956. The water-level decline in Walker Lake since 1882 has caused the surrounding alluvial aquifer to drain and groundwater levels to decline. The Wabuska streamflow-gaging station in northern Mason Valley demarcates the upper and lower Walker River basin. The hydrology of the lower Walker River basin is considerably different than the upper basin. The upper basin consists of valleys separated by consolidated-rock mountains. The alluvial aquifer in each valley thins or pinches out at the downstream end, forcing most groundwater to discharge along the river near where the river is gaged. The lower Walker River basin is one surface-water/groundwater system of losing and gaining reaches from Wabuska to Walker Lake, which makes determining stream losses and the direction and amount of subsurface flow difficult. Isotopic data indicate surface water and groundwater in the lower Walker River basin are from two sources of precipitation that have evaporated. The Walker River, groundwater along the Wassuk Range, and Walker Lake plot along one evaporation line. Groundwater along th

Scientific Investigations Report↗

USGS2011

The story of the Hawaiian Volcano Observatory -- A remarkable first 100 years of tracking eruptions and earthquakes

The year 2012 marks the centennial of the Hawaiian Volcano Observatory (HVO). With the support and cooperation of visionaries, financiers, scientists, and other individuals and organizations, HVO has successfully achieved 100 years of continuous monitoring of Hawaiian volcanoes. As we celebrate this milestone anniversary, we express our sincere mahalo—thanks—to the people who have contributed to and participated in HVO’s mission during this past century. First and foremost, we owe a debt of gratitude to the late Thomas A. Jaggar, Jr., the geologist whose vision and efforts led to the founding of HVO. We also acknowledge the pioneering contributions of the late Frank A. Perret, who began the continuous monitoring of Kīlauea in 1911, setting the stage for Jaggar, who took over the work in 1912. Initial support for HVO was provided by the Massachusetts Institute of Technology (MIT) and the Carnegie Geophysical Laboratory, which financed the initial cache of volcano monitoring instruments and Perret’s work in 1911. The Hawaiian Volcano Research Association, a group of Honolulu businessmen organized by Lorrin A. Thurston, also provided essential funding for HVO’s daily operations starting in mid-1912 and continuing for several decades. Since HVO’s beginning, the University of Hawaiʻi (UH), called the College of Hawaii until 1920, has been an advocate of HVO’s scientific studies. We have benefited from collaborations with UH scientists at both the Hilo and Mänoa campuses and look forward to future cooperative efforts to better understand how Hawaiian volcanoes work. The U.S. Geological Survey (USGS) has operated HVO continuously since 1947. Before then, HVO was under the administration of various Federal agencies—the U.S. Weather Bureau, at the time part of the Department of Agriculture, from 1919 to 1924; the USGS, which first managed HVO from 1924 to 1935; and the National Park Service from 1935 to 1947. For 76 of its first 100 years, HVO has been part of the USGS, the Nation’s premier Earth science agency. It currently operates under the direction of the USGS Volcano Science Center, which now supports five volcano observatories covering six U.S. areas—Hawaiʻi (HVO), Alaska and the Northern Mariana Islands (Alaska Volcano Observatory), Washington and Oregon (Cascades Volcano Observatory), California (California Volcano Observatory), and the Yellowstone region (Yellowstone Volcano Observatory). Although the National Park Service (NPS) managed HVO for only 12 years, HVO has enjoyed a close working relationship with Hawaiʻi Volcanoes National Park (named Hawaii National Park until 1961) since the park’s founding in 1916. Today, as in past years, the USGS and NPS work together to ensure the safety and education of park visitors. We are grateful to all park employees, particularly Superintendent Cindy Orlando and Chief Ranger Talmadge Magno and their predecessors, for their continuing support of HVO’s mission. HVO also works closely with the Hawaiʻi County Civil Defense. During volcanic and earthquake crises, we have appreciated the support of civil defense staff, especially that of Harry Kim and Quince Mento, who administered the agency during highly stressful episodes of Kīlauea's ongoing eruption. Our work in remote areas on Hawaiʻi’s active volcanoes is possible only with the able assistance of Hawaiʻi County and private pilots who have safely flown HVO staff to eruption sites through the decades. A special mahalo goes to David Okita, who has been HVO’s principal helicopter pilot for more than two decades. Many commercial and Civil Air Patrol pilots have also assisted HVO by reporting their observations during various eruptive events. Hawaiʻi’s news media—print, television, radio, and online sources—do an excellent job of distributing volcano and earthquake information to the public. Their assistance is invaluable to HVO, especially during times of crisis. HVO’s efforts to provide timely and accurate scientific information about Hawaiian volcanoes and earthquakes succeed only because of you, our receptive and keenly aware public. By following the activity of Hawaiʻi’s active volcanoes through our daily eruption updates posted on the HVO website, viewing HVO webcam images, reading our weekly “Volcano Watch” articles, and attending our public lectures, you help us to ensure that you can live safely with Hawaiʻi’s dynamic volcanoes. To everyone who has shared in HVO’s reaching this milestone—100 years of continuous volcano monitoring—we extend our deepest gratitude. Mahalo nui loa!

Hawai'i↗

USGS2014

Distance to human populations influences epidemiology of respiratory disease in desert tortoises

We explored variables likely to affect health of Agassiz's desert tortoises (Gopherus agassizii) in a 1,183-km2 study area in the central Mojave Desert of California between 2005 and 2008. We evaluated 1,004 tortoises for prevalence and spatial distribution of 2 pathogens, Mycoplasma agassizii and M. testudineum, that cause upper respiratory tract disease. We defined tortoises as test-positive if they were positive by culture and/or DNA identification or positive or suspect for specific antibody for either of the two pathogens. We used covariates of habitat (vegetation, elevation, slope, and aspect), tortoise size and sex, distance from another test-positive tortoise, and anthropogenic variables (distances to roads, agricultural areas, playas, urban areas, and centroids of human-populated census blocks). We used both logistic regression models and regression trees to evaluate the 2 species of Mycoplasma separately. The prevalence of test-positive tortoises was low: 1.49% (15/1,004) for M. agassizii and 2.89% (29/1,004) for M. testudineum. The spatial distributions of test-positive tortoises for the 2 Mycoplasma species showed little overlap; only 2 tortoises were test-positive for both diseases. However, the spatial distributions did not differ statistically between the 2 species. We consistently found higher prevalence of test-positive tortoises with shorter distances to centroids of human-populated census blocks. The relationship between distance to human-populated census blocks and tortoises that are test-positive for M. agassizii and potentially M. testudineum may be related to release or escape of captive tortoises because the prevalence of M. agassizii in captive tortoises is high. Our findings have application to other species of chelonians where both domestic captive and wild populations exist. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

Journal of Wildlife Management↗

USGS1989

Toxic effects of boron on mallard reproduction

Boron, a naturally occurring trace element generally considered environmentally innocuous, was documented to severely impair mallard reproduction. Boron is leached from irrigated agricultural soils and transported in drainage water that contaminates wetlands. Until now, only the selenium accumulated in aquatic food chains has been documented to pose a toxic hazard to wildlife in drainage water wetlands. Adult mallard ( Anas platyrhynchos ) ducks were fed diets supplemented with 0, 30, 300 or 1,000 ppm boron (fresh weight; diets contained about 10% moisture). The hatching success of fertile eggs was significantly reduced by 1,000 ppm boron, less than one-third the highest boron concentrations found in plants in California's San Joaquin Valley. Hatching weights, duckling survival and duckling weight gain were also reduced by 1,000 ppm boron. Boron concentrations in mallard egg, liver and brain tissues were dose-related. Boron did not affect adult survival or egg fertility. Management of drainage water-contaminated environments must now also consider the adverse effects of boron, as well as the possible interactions of drainage water contaminants.

Environmental Toxicology and Chemistry↗

USGS2016

Island characteristics within wetlands influence waterbird nest success and abundance

Coastal waterbird populations are threatened by habitat loss and degradation from urban and agricultural development and forecasted sea level rise associated with climate change. Remaining wetlands often must be managed to ensure that waterbird habitat needs, and other ecosystem functions, are met. For many waterbirds, the availability of island nesting habitat is important for conserving breeding populations. We used linear mixed models to investigate the influence of pond and island landscape characteristics on nest abundance and nest success of American avocets ( Recurvirostra americana ), black-necked stilts ( Himantopus mexicanus ), and Forster's terns ( Sterna forsteri ) in San Francisco Bay, California, USA, based on a 9-year dataset that included >9,000 nests. Nest abundance and nest success were greatest within ponds and on individual islands located either <1 km or >4 km from San Francisco Bay. Further, nest abundance was greater within ponds with relatively few islands, and on linear-shaped, highly elongated islands compared to more rounded islands. Nest success was greater on islands located away from the nearest surrounding pond levee. Compared to more rounded islands, linear islands contained more near-water habitat preferred by many nesting waterbirds. Islands located away from pond levees may provide greater protection from terrestrial egg and chick predators. Our results indicate that creating and maintaining a few, relatively small, highly elongated and narrow islands away from mainland levees, in as many wetland ponds as possible would be effective at providing waterbirds with preferred nesting habitat.

California↗

USGS2013

Estimation of annual agricultural pesticide use for counties of the conterminous United States, 1992-2009

A method was developed to calculate annual county level pesticide use for selected herbicides, insecticides, and fungicides applied to agricultural crops grown in the conterminous United States from 1992 through 2009. Pesticide-use data compiled by proprietary surveys of farm operations located within Crop Reporting Districts were used in conjunction with annual harvested-crop acreage reported by the U.S. Department of Agriculture National Agricultural Statistics Service (NASS) to calculate use rates per harvested crop acre, or an 'estimated pesticide use' (EPest) rate, for each crop by year. Pesticide-use data were not available for all Crop Reporting Districts and years. When data were unavailable for a Crop Reporting District in a particular year, EPest extrapolated rates were calculated from adjoining or nearby Crop Reporting Districts to ensure that pesticide use was estimated for all counties that reported harvested-crop acreage. EPest rates were applied to county harvested-crop acreage differently to obtain EPest-low and EPest-high estimates of pesticide-use for counties and states, with the exception of use estimates for California, which were taken from annual Department of Pesticide Regulation Pesticide Use Reports. Annual EPest-low and EPest-high use totals were compared with other published pesticide-use reports for selected pesticides, crops, and years. EPest-low and EPest-high national totals for five of seven herbicides were in close agreement with U.S. Environmental Protection Agency and National Pesticide Use Data estimates, but greater than most NASS national totals. A second set of analyses compared EPest and NASS annual state totals and state-by-crop totals for selected crops. Overall, EPest and NASS use totals were not significantly different for the majority of crop-stateyear combinations evaluated. Furthermore, comparisons of EPest and NASS use estimates for most pesticides had rank correlation coefficients greater than 0.75 and median relative errors of less than 15 percent. Of the 48 pesticide-by-crop combinations with 10 or more state-year combinations, 12 of the EPest-low and 17 of the EPest-high totals showed significant differences (p < 0.05) from NASS use estimates. The differences between EPest and NASS estimates did not follow consistent patterns related to particular crops, years, or states, and most correlation coefficients were greater than 0.75. EPest values from this study are suitable for making national, regional, and watershed assessments of annual pesticide use from 1992 to 2009. Although estimates are provided by county to facilitate estimation of watershed pesticide use for a wide variety of watersheds, there is a greater degree of uncertainty in individual county-level estimates when compared to Crop Reporting District or state-level estimates because (1) EPest crop-use rates were developed on the basis of pesticide use on harvested acres in multi-county areas (Crop Reporting Districts) and then allocated to county harvested cropland; (2) pesticide-by-crop use rates were not available for all Crop Reporting Districts in the conterminous United States, and extrapolation methods were used to estimate pesticide use for some counties; and (3) it is possible that surveyed pesticide-by-crop use rates do not reflect all agricultural use on all crops grown. The methods developed in this study also are applicable to other agricultural pesticides and years.

Scientific Investigations Report↗

USGS2023

Resilience of riparian vegetation productivity to early 21st century drought in northern California, USA

Drought and intensive land use can interact as stressors on riparian vegetation, especially along rivers flowing through seasonally dry landscapes. Knowledge of past riparian vegetation response to drought and land use change can provide land managers with a better understanding of changes induced by upstream management actions, climate change, and chronic stressors. To investigate the response of riparian vegetation productivity to drought and land use, we developed a 21-year time series (2000–2020) of growing season vegetation dynamics using near-infrared reflectance of vegetation (NIR V ) derived from satellite data across 30 watershed subbasins that drain into the San Francisco Bay Delta in central California, USA. We observed a strong response of riparian vegetation to drought, but rapid recovery and very few long-term declines in productivity. At a local level, vegetation communities' response to drought and post-drought productivity dynamics were highly variable across biophysical settings and land use gradients. Most of the riparian areas with long-term declines in NIR V were located in the lower elevation Coast Range on the western side of the study area where there is little to no water engineering or agricultural irrigation runoff to subsidize riparian vegetation. Riparian areas with the greatest long-term increase were along rivers draining the higher elevation Sierra Nevada range to the east. Our results suggest that river systems with a high proportion of water originating as snowmelt may be more buffered against long-term drought-driven declines in productivity than those dependent exclusively on winter rainfall. The long-term increase in NIR V in the vast majority of riparian areas within our study area may also have been driven in part by increasing atmospheric CO 2 concentrations, which have been shown to increase plant water use efficiency.

California↗

USGS2011

Subsurface transport of orthophosphate in five agricultural watersheds, USA

Concentrations of dissolved orthophosphate (ortho P) in the unsaturated zone, groundwater, tile drains, and groundwater/stream water interfaces were assessed in five agricultural watersheds to determine the potential for subsurface transport. Concentrations of iron oxides were measured in the aquifer material and adsorption of ortho P on oxide surfaces was assessed by geochemical modeling. Attenuation of ortho P in these aquifers was attributed primarily to sorption onto iron oxides, and in one location onto clay minerals. Only one location showed a clear indication of phosphorus transport to a stream from groundwater discharge, although groundwater did contribute to the stream load elsewhere. Subsurface ortho P movement at a site in California resulted in a plume down gradient from orchards, which was attenuated by a 200 m thick riparian zone with natural vegetation. Iron oxides had an effect on phosphorus movement and concentrations at all locations, and groundwater chemistry, especially pH, exerted a major control on the amount of phosphorus adsorbed. Groundwater pH at a site in Maryland was below 5 and that resulted in complete sequestration of phosphorus and no movement toward the stream. Geochemical modeling indicated that as the surfaces approached saturation, groundwater concentrations of ortho P rise rapidly.

Journal of Hydrology↗

USGS2018

Klamath River Basin water-quality data

The Klamath River Basin stretches from the mountains and inland basins of south-central Oregon and northern California to the Pacific Ocean, spanning multiple climatic regions and encompassing a variety of ecosystems. Water quantity and water quality are important topics in the basin, because water is a critical resource for farming and municipal use, power generation, and for the support of wildlife, aquatic ecosystems, and endangered species. Upper Klamath Lake is the largest freshwater lake in Oregon (112 square miles) and is known for its seasonal algal blooms. The Klamath River has dams for hydropower and the upper basin requires irrigation water to support agriculture and grazing. Multiple species of endangered fish inhabit the rivers and lakes, and the marshes are key stops on the Pacific flyway for migrating birds. For these and other reasons, the water resources in this basin have been studied and monitored to support their management distribution.

California, Oregon↗