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At least 559 records · Page 31Linked to original sources
USGS2009

A burning story: The role of fire in the history of life

Ecologists, biogeographers, and paleobotanists have long thought that climate and soils controlled the distribution of ecosystems, with the role of fire getting only limited appreciation. Here we review evidence from different disciplines demonstrating that wildfire appeared concomitant with the origin of terrestrial plants and played an important role throughout the history of life. The importance of fire has waxed and waned in association with changes in climate and paleoatmospheric conditions. Well before the emergence of humans on Earth, fire played a key role in the origins of plant adaptations as well as in the distribution of ecosystems. Humans initiated a new stage in ecosystem fire, using it to make the Earth more suited to their lifestyle. However, as human populations have expanded their use of fire, their actions have come to dominate some ecosystems and change natural processes in ways that threaten the sustainability of some landscapes. ?? 2009 by American Institute of Biological Sciences.

BioScience↗
USGS2020

Ecology of urban climates: The need for landscape biophysics in cities

In this chapter we will review and evaluate the climatic and ecological parallels between urbanization and climate change, with an emphasis on temperature and its effects on terrestrial ectotherms, a group of organisms thought to be particularly sensitive to climate change. We will summarize patterns of urban warming and how they relate to global climate change projections, then discuss the potential strengths and limitations of urban climates as a source of insight into biotic responses to climate change and highlight future research directions. Future work will benefit from explicit consideration of the mechanisms by which urbanization and urban warming drive ectotherms’ body temperatures and activity periods. Urban ecosystems may provide a valuable first approximation of the dramatic effects of warming on certain terrestrial systems, and continued advances in urban thermal biology will promote a mechanistic understanding of how organisms use, respond to, and adapt to the unique thermal landscapes of cities.

Book chapter↗
USGS2008

Avian Species Inventory at Manzanar National Historic Site, California - Final Report to the National Park Service

We conducted a baseline inventory for avian species at Manzanar National Historic Site, Inyo County, Calif., from 2002 to 2005. Under the guidelines of the Mojave Network Biological Inventory Program, the primary objectives for this study were to (1) inventory and document the occurrence of avian species at Manzanar, with the goal of documenting at least 90 percent of the species present; (2) provide a geographic information system (GIS)-referenced list of sensitive species occurring at Manzanar that are rare, on Federal or State lists, or otherwise worthy of special consideration; and (3) enter all species data into the National Park Service NPSpecies database. Survey methods included general area searches, variable circular plot point-count censusing, nocturnal surveys, and nest searching. During 13 year-round survey sessions, we documented the occurrence of 132 bird species at Manzanar and confirmed breeding by 19 of these. Based on our findings, as well as review of the literature and searches for records of species occurrence, we estimate inventory completeness for regularly occurring bird species at Manzanar to be near 90 percent. No sensitive species on Federal or State lists were found. The distribution and relative abundance of common bird species at this site is now well enough known to begin development of a monitoring protocol for this group.

Open-File Report↗
USGS2017

Mechanisms of nitrogen deposition effects on temperate forest lichens and trees

We review the mechanisms of deleterious nitrogen (N) deposition impacts on temperate forests, with a particular focus on trees and lichens. Elevated anthropogenic N deposition to forests has varied effects on individual organisms depending on characteristics both of the N inputs (form, timing, amount) and of the organisms (ecology, physiology) involved. Improved mechanistic knowledge of these effects can aid in developing robust predictions of how organisms respond to either increases or decreases in N deposition. Rising N levels affect forests in micro- and macroscopic ways from physiological responses at the cellular, tissue, and organism levels to influencing individual species and entire communities and ecosystems. A synthesis of these processes forms the basis for the overarching themes of this paper, which focuses on N effects at different levels of biological organization in temperate forests. For lichens, the mechanisms of direct effects of N are relatively well known at cellular, organismal, and community levels, though interactions of N with other stressors merit further research. For trees, effects of N deposition are better understood for N as an acidifying agent than as a nutrient; in both cases, the impacts can reflect direct effects on short time scales and indirect effects mediated through long-term soil and belowground changes. There are many gaps on fundamental N use and cycling in ecosystems, and we highlight the most critical gaps for understanding potential deleterious effects of N deposition. For lichens, these gaps include both how N affects specific metabolic pathways and how N is metabolized. For trees, these gaps include understanding the direct effects of N deposition onto forest canopies, the sensitivity of different tree species and mycorrhizal symbionts to N, the influence of soil properties, and the reversibility of N and acidification effects on plants and soils. Continued study of how these N response mechanisms interact with one another, and with other dimensions of global change, remains essential for predicting ongoing changes in lichen and tree populations across North American temperate forests.

Ecosphere↗
USGS2022

The protectiveness of aquatic life criteria for threatened or endangered aquatic species: Cadmium in California

In the United States, conflicts can arise between the processes to derive aquatic life criteria (ALC) for chemicals under the Clean Water Act (CWA) and the evaluation procedures used in Endangered Species Act (ESA) consultations on the protectiveness of those criteria for protected species. This paper examines the roots of, and possible reconciliation of, one longstanding conflict over cadmium aquatic life criteria in California. This case study includes 1) an overview of occurrences of cadmium in the aquatic environment, 2) factors affecting toxicity of cadmium to aquatic life, 3) a contrast between the analytical procedures of CWA aquatic life criteria derivation and ESA consultation, 4) quantitative estimates of no-effect concentrations of cadmium for 44 ESA listed species in comparison with updated aquatic life criteria, and 5) concludes with suggestions to update California’s aquatic life criteria for cadmium that would be more protective of sensitive ESA listed species. A root cause of conflict is the different levels of biological organization that are the focus of CWA and ESA procedures. The CWA ALC are intended to protect diverse ecosystems by protecting at least 95% of the species richness in communities, allowing that it is acceptable for some species in the residual most sensitive 5% of the community richness to be harmed or even locally extirpated so long as they are not societally important species. The ESA is charged with minimizing harm to individual organisms and disallows increasing risk of extinction or impeding recovery of protected species. With cadmium in California, these procedures converge because some of the most sensitive species to cadmium happen to be surrogates for protected species (acute responses of steelhead/rainbow trout, Oncorhynchus mykiss , and chronic responses of threespine stickleback, Gasterosteus aculeatus ). The present review concludes that while the superseded 1996 cadmium criteria versions would not be fully protective for up to half of the 44 ESA listed aquatic species in California, the updated 2016 versions would be more protective. Still, the review shows that the updated acute criteria would only fully protect the less sensitive half of the distribution of data for steelhead/rainbow trout sensitivity to cadmium, and the chronic criterion still would not protect the listed threespine stickleback. With a data rich species such as rainbow trout, instead of defining acute criteria using a central tendency statistic such as the geometric mean of multiple test responses, using a lower statistic such as the 10th percentile would ensure that the vast majority of a sensitive, protected species (and all less sensitive species) would be protected. Available data for the stickleback indicate it may be highly sensitive to cadmium, but no threshold can be derived from existing data. Additional testing with cadmium and stickleback would be needed to suggest an alternative, quantitative approach.

California↗
USGS2024

Measuring and interpreting the surface and shallow subsurface process influences on coastal wetland elevation: A review

A century ago, measuring elevation in tidal wetlands proved difficult, as survey leveling of soft marsh soils relative to a fixed datum was error prone. For 60 years, vertical accretion measures from marker horizons were used as analogs of elevation change. But without a direct measure of elevation, it was not possible to measure the total influence of surface and subsurface processes on elevation. In the 1990s, the surface elevation table (SET) method, which measures the movement of the wetland surface relative to a fixed point beneath the surface (i.e., the SET benchmark base), was combined with the marker horizon method (SET-MH), providing direct, independent, and simultaneous measures of surface accretion and elevation and quantification of surface and shallow subsurface process influences on elevation. SET-MH measures have revealed several fundamental findings about tidal wetland dynamics. First, accretion [ A ] is often a poor analog for elevation change [ E ]. From 50–66% of wetlands experience shallow subsidence ( A > E ), 7–10% shallow expansion ( A < E ), 7% shrink-swell, and for 24–36% A is an analog for E ( A = E ). Second, biological processes within the root zone and physical processes within and below the root zone influence elevation change in addition to surface processes. Third, vegetation plays a key role in wetland vertical dynamics. Plants trap sediment and increase resistance to erosion and compaction. Soil organic matter accumulation can lead to shallow expansion, but reduced plant growth can lead to subsidence, and plant death to soil collapse. Fourth, elevation rates are a better indicator of wetland response to sea-level rise than accretion rates because they incorporate subsurface influences on elevation occurring beneath the marker horizon. Fifth, combining elevation trends with relative sea-level rise (RSLR) trends improves estimates of RSLR at the wetland surface (i.e., RSLR wet ). Lastly, subsurface process influences are fundamental to a wetland’s response to RSLR and plant community dynamics related to wetland transgression, making the SET-MH method an invaluable tool for understanding coastal wetland elevation dynamics.

Estuaries and Coasts↗
USGS2003

Multiple stressor effects in relation to declining amphibian populations

Original research discusses the protocols and approaches to studying the effects of multiple environmental stressors on amphibian populations and gives new perspectives on this complicated subject. This new publication integrates a variety of stressors that can act in concert and may ultimately cause a decline in amphibian populations. Sixteen peer-reviewed papers cover: Toxicity Assessment examines methods, which range from long-established laboratory approaches for evaluating adverse chemical effects to amphibians, to methods that link chemicals in surface waters, sediments, and soils with adverse effects observed among amphibians in the field. Field and Laboratory Studies illustrates studies in the evaluation of multiple stressor effects that may lead to declining amphibian populations. A range of laboratory and field studies of chemicals, such as herbicides, insecticides, chlorinated organic compounds, metals, and complex mixtures are also included. Causal Analysis demonstrates the range of tools currently available for evaluating "cause-effect" relationships between environmental stressors and declining amphibian populations. Audience: This new publication is a must-have for scientists and resource management professionals from diverse fields, including ecotoxicology, chemistry, ecology, field biology, conservation biology, and natural resource management.

Special Technical Report↗
USGS2013

Plant invasions in protected areas of tropical pacific islands, with special reference to Hawaii

Isolated tropical islands are notoriously vulnerable to plant invasions. Serious management for protection of native biodiversity in Hawaii began in the 1970s, arguably at Hawaii Volcanoes National Park. Concerted alien plant management began there in the 1980s and has in a sense become a model for protected areas throughout Hawaii and Pacific Island countries and territories. We review the relative successes of their strategies and touch upon how their experience has been applied elsewhere. Protected areas in Hawaii are fortunate in having relatively good resources for addressing plant invasions, but many invasions remain intractable, and invasions from outside the boundaries continue from a highly globalised society with a penchant for horticultural novelty. There are likely few efforts in most Pacific Islands to combat alien plant invasions in protected areas, but such areas may often have fewer plant invasions as a result of their relative remoteness and/or socio-economic development status. The greatest current needs for protected areas in this region may be for establishment of yet more protected areas, for better resources to combat invasions in Pacific Island countries and territories, for more effective control methods including biological control programme to contain intractable species, and for meaningful efforts to address prevention and early detection of potential new invaders.

Hawaii↗
USGS2005

Individual-based modeling of ecological and evolutionary processes

Individual-based models (IBMs) allow the explicit inclusion of individual variation in greater detail than do classical differential-equation and difference-equation models. Inclusion of such variation is important for continued progress in ecological and evolutionary theory. We provide a conceptual basis for IBMs by describing five major types of individual variation in IBMs: spatial, ontogenetic, phenotypic, cognitive, and genetic. IBMs are now used in almost all subfields of ecology and evolutionary biology. We map those subfields and look more closely at selected key papers on fish recruitment, forest dynamics, sympatric speciation, metapopulation dynamics, maintenance of diversity, and species conservation. Theorists are currently divided on whether IBMs represent only a practical tool for extending classical theory to more complex situations, or whether individual-based theory represents a radically new research program. We feel that the tension between these two poles of thinking can be a source of creativity in ecology and evolutionary theory.

Annual Review of Ecology, Evolution, and Systemati↗
USGS2009

[book review] Systematics and Taxonomy of Australian Birds -- Les Christidis and Walter E. Boles. Collingwood, VIC, Australia: CSIRO Publishing, 2008

Systematists argue that the importance of our work lies not only in the elucidation of evolutionary relationships, but also in the incorporation of evolutionary information into classifications and the use of these classifications by government agencies, nongovernmental organizations, professional scientists, and others interested in biodiversity. If this is true, and I think that it is, then synthetic publications that make our findings accessible to a wide audience, such as Christidis and Boles' new Systematics and Taxonomy of Australian Birds , may be among the most significant works that we publish.

Systematic Biology↗
USGS2011

Advancing environmental toxicology through chemical dosimetry: External exposures versus tissue residues

The tissue residue dose concept has been used, although in a limited manner, in environmental toxicology for more than 100 y. This review outlines the history of this approach and the technical background for organic chemicals and metals. Although the toxicity of both can be explained in tissue residue terms, the relationship between external exposure concentration, body and/or tissues dose surrogates, and the effective internal dose at the sites of toxic action tends to be more complex for metals. Various issues and current limitations related to research and regulatory applications are also examined. It is clear that the tissue residue approach (TRA) should be an integral component in future efforts to enhance the generation, understanding, and utility of toxicity testing data, both in the laboratory and in the field. To accomplish these goals, several key areas need to be addressed: 1) development of a risk-based interpretive framework linking toxicology and ecology at multiple levels of biological organization and incorporating organism-based dose metrics; 2) a broadly applicable, generally accepted classification scheme for modes/mechanisms of toxic action with explicit consideration of residue information to improve both single chemical and mixture toxicity data interpretation and regulatory risk assessment; 3) toxicity testing protocols updated to ensure collection of adequate residue information, along with toxicokinetics and toxicodynamics information, based on explicitly defined toxicological models accompanied by toxicological model validation; 4) continued development of residueeffect databases is needed ensure their ongoing utility; and 5) regulatory guidance incorporating residue-based testing and interpretation approaches, essential in various jurisdictions. ??:2010 SETAC.

Integrated Environmental Assessment and Management↗
USGS2023

Gains and gaps in knowledge surrounding freshwater mollusk ecosystem services

Ecosystems provide essential services to people including food, water, climate regulation, and aesthetic experiences. Biodiversity can enhance and stabilize ecosystem function and the resulting services natural systems provide. Freshwater mollusks are a diverse group that provide a variety of ecosystem services through their feeding habits (e.g., filter feeding, grazing), top-down and bottom-up effects on food webs, provisioning of habitat, use as a food resource by people, and cultural importance. Research focused on quantifying the direct and indirect ways mollusks influence ecosystem services may help inform policy makers and the public about the value of mollusk communities to society. The Freshwater Mollusk Conservation Society highlighted the need to evaluate mollusk ecosystem services in their 2016 National Strategy for the Conservation of Native Freshwater Mollusks, and, while significant progress has been made, considerable work remains across the research, management, and outreach communities. We briefly review the global status of native freshwater mollusks, assess the current state of knowledge regarding their ecosystem services, and highlight recent advances and knowledge gaps to guide further research and conservation actions. Our intention is to provide ecologists, conservationists, economists, and social scientists with information to improve science-based consideration of the social, ecological, and economic value of mollusk communities to healthy aquatic systems.

Freshwater Mollusk Biology and Conservation↗
USGS2005

Environmental exposure modeling and monitoring of human pharmaceutical concentrations in the environment

Human pharmaceuticals are receiving increased attention as environmental contaminants. This is due to their biological activity and the number of monitoring programs focusing on analysis of these compounds in various environmental media and compartments. Risk assessments are needed to understand the implications of reported concentrations; a fundamental part of the risk assessment is an assessment of environmental exposures. The purpose of this chapter is to provide guidance on the use of predictive tools (e.g., models) and monitoring data in exposure assessments for pharmaceuticals in the environment. Methods to predict environmental concentrations from equations based on first principles are presented. These equations form the basis of existing GIS (geographic information systems)-based systems for understanding the spatial distribution of pharmaceuticals in the environment. The pharmaceutical assessment and transport (P h ATE), georeferenced regional exposure assessment tool for European rivers (GREAT-ER), and geographical information system (GIS)-ROUT models are reviewed and recommendations are provided concerning the design and execution of monitoring studies. Model predictions and monitoring data are compared to evaluate the relative utility of each approach in environmental exposure assessments. In summary, both models and monitoring data can be used to define representative exposure concentrations of pharmaceuticals in the environment in support of environmental risk assessments.

Book chapter↗
USGS2004

Nest survival estimation: A review of alternatives to the Mayfield estimator

Reliable estimates of nest survival are essential for assessing strategies for avian conservation. We review the history of modifications and alternatives for estimating nest survival, with a focus on four techniques: apparent nest success, the Mayfield estimator, the Stanley method, and program MARK. The widely used Mayfield method avoids the known positive bias inherent in apparent nest success by estimating daily survival rates using the number of exposure days, eliminating the need to monitor nests from initiation. Concerns that some of Mayfield's assumptions were restrictive stimulated the development of new techniques. Stanley's method allows for calculation of stage-specific daily survival rates when transition and failure dates are unknown, and eliminates Mayfield's assumption that failure occurred midway through the nest-check interval. Program MARK obviates Mayfield's assumption of constant daily survival within nesting stages and evaluates variation in nest survival as a function of biologically relevant factors. These innovative methods facilitate the evaluation of nest survival using an information-theoretic approach. We illustrate use of these methods with Lark Bunting ( Calamospiza melanocorys ) nest data from the Pawnee National Grassland, Colorado. Nest survival estimates calculated using Mayfield, Stanley, and MARK methods were similar, but apparent nest success estimates ranged 1– 24% greater than the other estimates. MARK analysis revealed that survival of Lark Bunting nests differed between site–year groups, declined with both nest age and time in season, but did not vary with weather parameters. We encourage researchers to use these approaches to gain reliable and meaningful nest survival estimates.

The Condor↗
USGS2021

A roadmap for sampling and scaling biological nitrogen fixation in terrestrial ecosystems

Accurately quantifying rates and patterns of biological nitrogen fixation (BNF) in terrestrial ecosystems is essential to characterize ecological and biogeochemical interactions, identify mechanistic controls, improve BNF representation in conceptual and numerical modelling, and forecast nitrogen limitation constraints on future carbon (C) cycling. While many resources address the technical advantages and limitations of different methods for measuring BNF, less systematic consideration has been given to the broader decisions involved in planning studies, interpreting data, and extrapolating results. Here, we present a conceptual and practical road map to study design, study execution, data analysis and scaling, outlining key considerations at each step. We address issues including defining N‐fixing niches of interest, identifying important sources of temporal and spatial heterogeneity, designing a sampling scheme (including method selection, measurement conditions, replication, and consideration of hotspots and hot moments), and approaches to analysing, scaling and reporting BNF. We also review the comparability of estimates derived using different approaches in the literature, and provide sample R code for simulating symbiotic BNF data frames and upscaling. Improving and standardizing study design at each of these stages will improve the accuracy and interpretability of data, define limits of extrapolation, and facilitate broader use of BNF data for downstream applications. We highlight aspects—such as quantifying scales of heterogeneity, statistical approaches for dealing with non‐normality, and consideration of rates versus ecological significance—that are ripe for further development.

Methods in Ecology and Evolution↗
USGS1973

A review of benthic faunal surveys in San Francisco Bay

During the past 60 years, considerable effort has been expended in studies of the relations of the biotic community and physicochemical characteristics of San Francisco Bay water. In very recent years these studies have emphasized the relations between the 'state of health' of bottom-living invertebrates (the benthos) and the levels of pollutants in the bay. Benthic organisms, generally sessile, are unable to escape deleterious environmental changes, and they reflect these changes in alterations of normal species composition of assemblages and species abundance. Data that expands understanding of these relations in urbanized areas such as San Francisco Bay are critical. Because of the implications of such data in control of water quality, the U.S. Geological Survey undertook a review of the results and major conclusions of San Francisco Bay benthic surveys. The size and species composition of faunal assemblages are largely controlled by the salinity of the water, the texture of the bottom sediments, and locally by wastes discharged into the bay. Efforts to describe the structure and function of benthic communities of the bay and to quantify the effects of waste discharge on them have been hampered by inconsistent and often faulty sampling methodology and species identification. Studies made show a lack of information on the normal life processes of the organisms concerned. The diversity index (a mathematical expression of the number of kinds of organisms present at a location), commonly used to describe the 'health' of the benthic community, has been employed without regard for the need for standardizing methodology and species identifications or for understanding natural biological processes that affect such mathematical indices. There are few reliable quantitative data on the distribution of benthic organisms in San Francisco Bay with which future assessments of the 'health' of the benthic community might be compared. Methods for study of the benthos must be standardized, identifications of species verified by trained taxonomists, and new field and laboratory studies undertaken before we can expect to obtain an accurate description of the benthic fauna and its relations with the environment.

Circular↗
USGS2018

Biology and impacts of Pacific Islands invasive species. 14. Sus scrofa the feral pig (Artiodactyla: Suidae)

Feral pigs ( Sus scrofa L.) are perhaps the most abundant, widespread, and economically significant large introduced vertebrate across the Pacific island region. Unlike many other nonnative invasive species, feral pigs have both cultural and recreational importance in the region, complicating their management. Today, Pacific island feral pigs are a mixture of several strains of domestic swine, Asiatic wild boar, and European wild boar. Due to their generalist diet and rooting behavior, feral pigs alter soils and watersheds and negatively impact native and nonnative flora and fauna. As a result, feral pigs have played a role in the extinction of several species of plants and animals on Pacific islands and have negative effects on both ecotourism and agricultural industries in the region. Despite numerous published studies on feral pigs in the Pacific island region, of which the majority include systematic analyses of original empirical data, some fundamental aspects of feral pig ecology remain poorly characterized, at least partly due to the remote and inaccessible environments that they often inhabit. To address these knowledge gaps, effort should be made to integrate research conducted outside the Pacific island region into local management strategies. This review summarizes the origins, history, ecology, environmental effects, and current management of feral pigs in the Pacific island region; integrates regional scientific findings with those of other insular and continental systems; and identifies current knowledge gaps requiring further research to inform the ecology and management of this impactful invasive species.

Hawai'i↗
USGS2023

Changes in mangrove blue carbon under elevated atmospheric CO2

While there is consensus that blue carbon ecosystems, such as mangroves, have an important role in mitigating some aspects of global climate change, little is known about mangrove carbon cycling under elevated atmospheric CO 2 concentrations ( e CO 2 ). Here, we review studies in order to identify pathways for how e CO 2 might influence mangrove ecosystem carbon cycling. In general, e CO 2 alters plant productivity, species community composition, carbon fluxes, and carbon deposition in ways that enhance mangrove carbon storage with e CO 2 . As a result, a negative feedback to climate change exists whereby e CO 2 adds to mangrove’s ability to sequester additional carbon, which in turn reduces the rate by which CO 2 builds. Furthermore, e CO 2 affects warming and sea-level rise (SLR) through alternate pathways, which coinfluence the mangrove response in both antagonistic (i.e., warming = greater carbon loss to decomposition) and synergistic (i.e., SLR = greater soil carbon burial) ways. e CO 2 is projected to become a more prominent driver in the future before reaching a steady state. However, given the complexity of the interactions of biological and environmental factors with e CO 2 , long-term field observations and in situ simulation experiments can help to better understand the mechanisms for proper model initialization to predict future changes in mangrove carbon sequestration.

Ecosystem Health and Sustainability↗