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USGS2013

Mapping risk for nest predation on a barrier island

Barrier islands and coastal beach systems provide nesting habitat for marine and estuarine turtles. Densely settled coastal areas may subsidize nest predators. Our purpose was to inform conservation by providing a greater understanding of habitat-based risk factors for nest predation, for an estuarine turtle. We expected that habitat conditions at predated nests would differ from random locations at two spatial extents. We developed and validated an island-wide model for the distribution of predated Diamondback terrapin nests using locations of 198 predated nests collected during exhaustive searches at Fisherman Island National Wildlife Refuge , USA. We used aerial photographs to identify all areas of possible nesting habitat and searched each and surrounding environments for nests, collecting location and random-point microhabitat data. We built models for the probability of finding a predated nest using an equal number of random points and validated them with a reserve set ( N  = 67). Five variables in 9 a priori models were used and the best selected model (AIC weight 0.98) reflected positive associations with sand patches near marshes and roadways. Model validation had an average capture rate of predated nests of 84.14 % (26.17–97.38 %, Q1 77.53 %, median 88.07 %, Q3 95.08 %). Microhabitat selection results suggest that nests placed at the edges of sand patches adjacent to upland shrub/forest and marsh systems are vulnerable to predation. Forests and marshes provide cover and alternative resources for predators and roadways provide access; a suggestion is to focus nest protection efforts on the edges of dunes, near dense vegetation and roads.

Virginia↗

USGS2010

Detecting the spatial and temporal variability of chlorophyll-a concentration and total suspended solids in Apalachicola Bay, Florida using MODIS imagery

Apalachicola Bay, Florida, accounts for 90% of Florida's and 10% of the nation's eastern oyster ( Crassostrea virginica ) harvesting. Chlorophyll- a concentration and total suspended solids (TSS) are two important water quality variables, among other environmental factors such as salinity, for eastern oyster production in Apalachicola Bay. In this research, we developed regression models of the relationships between the reflectance of the Moderate-Resolution Imaging Spectroradiometer (MODIS) Terra 250 m data and the two water quality variables based on the Bay-wide field data collected during 14–17 October 2002, a relatively dry period, and 3–5 April 2006, a relatively wet period, respectively. Then we selected the best regression models (highest coefficient of determination, R 2 ) to derive Bay-wide maps of chlorophyll- a concentration and TSS for the two periods. The MODIS-derived maps revealed large spatial and temporal variations in chlorophyll- a concentration and TSS across the entire Apalachicola Bay.

Florida↗

USGS2005

Habitat associations of age-0 cutthroat trout in a spring stream improved for adult salmonids

Native cutthroat trout ( Oncorhynchus clarki ) in the Snake River watershed use streams formed by large springs for spawning and nursery habitat. Several spring streams have been modified to enhance abundance of adult salmonids, but the habitat associations of age-0 cutthroat trout in these systems are undescribed. We assessed the frequency of collection of age-0 cutthroat trout in riffles, riffle margins, pool margins, and backwaters from late June to the middle of August 2000 in a spring stream with such modifications. The proportion of sites in which age-0 cutthroat trout were collected increased up to the middle of July and then decreased. We found substantially lower frequencies of collection of age-0 cutthroat trout in riffles compared to the three stream-margin habitat types. Age-0 cutthroat trout appeared to select shallow, low-velocity, stream-margin habitat with cover that provided protection from piscivorous adult salmonids and avian predators. Our observations suggest that modification of spring streams for production of cutthroat trout should include efforts to manage stream margins so they provide cover in the form of aquatic macrophytes or overhanging vegetation for age-0 fish.

Journal of Freshwater Ecology↗

USGS2011

Competitive interactions between walleye (Sander vitreus) and smallmouth bass (Micropterus dolomieu) under various controlled conditions

The range of smallmouth bass (Micropterus dolomieu) is expanding northward, creating new interactions with native predators, including walleye (Sander vitreus). We used a series of experiments to investigate competition between walleye (WAE) and smallmouth bass (SMB) at different life stages and light conditions, identified behaviors that allowed one fish to outcompete another, and evaluated whether prey switching mitigated competitive interactions. Juvenile and adult SMB appeared to outcompete WAE when fed during the daytime; neither species dominated when fed near dusk. Attack rates and capture efficiencies of both species were similar with an intra- or interspecific competitor, but SMB often exploited prey before the competitor had a chance to feed (exploitative competition) or displayed agonistic behaviors toward a potential competitor (interference competition). Prey selectivity of WAE or SMB did not differ when by themselves or with a potential competitor. These results indicate that SMB could outcompete WAE under limiting prey conditions due to the aggressive nature of SMB, but resources may be partitioned at least along a temporal scale. ?? 2011 Taylor & Francis.

Journal of Freshwater Ecology↗

USGS2005

Inferring differential evolutionary processes of plant persistence traits in Northern Hemisphere Mediterranean fire-prone ecosystems

1 Resprouting capacity (R) and propagule-persistence (P) are traits that are often considered to have evolved where there are predictable crown fires. Because several indicators suggest a stronger selective pressure for such traits in California than in the Mediterranean Basin, we hypothesize that plant species should have evolved to become R+ and P+ more frequently in California than in the Mediterranean Basin. 2 To test this hypothesis we studied the phylogenetic association between R and P states in both California and the Mediterranean Basin using published molecular phylogenies. 3 The results suggest that R and P evolved differently in the two regions. The occurrence of the states differs significantly between regions for trait P, but not for trait R. The different patterns (towards R+ and P+ in California and towards R+ and P- in the Mediterranean Basin) are reflected in the higher abundance and the wider taxonomic distribution of species with both persistence traits (R+P+ species) in California. 4 The differential acquisition of fire persistence mechanisms at the propagule level (P+) supports the idea that fire selective pressures has been higher in California than in the Mediterranean Basin. 5 Our comparative phylogenetic-informed analysis contributes to an understanding of the differential role of the Quaternary climate in determining fire persistence traits in different Mediterranean-type ecosystems and, thus, to the debate on the evolutionary convergence of traits. ?? 2006 British Ecological Society.

Journal of Ecology↗

USGS2011

Habitat selection by a focal predator (Canis lupus) in a multiprey ecosystem of the northern Rockies

Large predators respond to land cover and physiography that maximize the likelihood of encountering prey. Using locations from global positioning system-collared wolves (Canis lupus), we examined whether land cover, vegetation productivity or change, or habitat-selection value for ungulate prey species themselves most influenced patterns of selection by wolves in a large, intact multiprey system of northern British Columbia. Selection models based on land cover, in combination with topographical features, consistently outperformed models based on indexes of vegetation quantity and quality (using normalized difference vegetation index) or on selection value to prey species (moose [Alces americanus], elk [Cervus elaphus], woodland caribou [Rangifer tarandus], and Stone's sheep [Ovis dalli stonei]). Wolves generally selected for shrub communities and high diversity of cover across seasons and avoided conifer stands and non-vegetated areas and west aspects year-round. Seasonal selection strategies were not always reflected in use patterns, which showed highest frequency of use in riparian, shrub, and conifer classes. Patterns of use and selection for individual wolf packs did not always conform to global models, and appeared related to the distribution of land cover and terrain within respective home ranges. Our findings corroborate the biological linkages between wolves and their habitat related to ease of movement and potential prey associations. ?? American 2011 Society of Mammalogists.

Journal of Mammalogy↗

USGS2011

Landscape features influence postrelease predation on endangered black-footed ferrets

Predation can be a critical factor influencing recovery of endangered species. In most recovery efforts lethal and nonlethal influences of predators are not sufficiently understood to allow prediction of predation risk, despite its importance. We investigated whether landscape features could be used to model predation risk from coyotes ( Canis latrans ) and great horned owls ( Bubo virginianus ) on the endangered black-footed ferret ( Mustela nigripes ). We used location data of reintroduced ferrets from 3 sites in South Dakota to determine whether exposure to landscape features typically associated with predators affected survival of ferrets, and whether ferrets considered predation risk when choosing habitat near perches potentially used by owls or near linear features predicted to be used by coyotes. Exposure to areas near likely owl perches reduced ferret survival, but landscape features potentially associated with coyote movements had no appreciable effect on survival. Ferrets were located within 90 m of perches more than expected in 2 study sites that also had higher ferret mortality due to owl predation. Densities of potential coyote travel routes near ferret locations were no different than expected in all 3 sites. Repatriated ferrets might have selected resources based on factors other than predator avoidance. Considering an easily quantified landscape feature (i.e., owl perches) can enhance success of reintroduction efforts for ferrets. Nonetheless, development of predictive models of predation risk and management strategies to mitigate that risk is not necessarily straightforward for more generalist predators such as coyotes.

Journal of Mammalogy↗

USGS1998

Limitations to mapping habitat use areas in changing landscapes using the Mahalanobis distance statistic

We tested the potential of a GIS mapping technique, using a resource selection model developed for black-tailed jackrabbits (Lepus californicus) and based on the Mahalanobis distance statistic, to track changes in shrubsteppe habitats in southwestern Idaho. If successful, the technique could be used to predict animal use areas, or those undergoing change, in different regions from the same selection function and variables without additional sampling. We determined the multivariate mean vector of 7 GIS variables that described habitats used by jackrabbits. We then ranked the similarity of all cells in the GIS coverage from their Mahalanobis distance to the mean habitat vector. The resulting map accurately depicted areas where we sighted jackrabbits on verification surveys. We then simulated an increase in shrublands (which are important habitats). Contrary to expectation, the new configurations were classified as lower similarity relative to the original mean habitat vector. Because the selection function is based on a unimodal mean, any deviation, even if biologically positive, creates larger Malanobis distances and lower similarity values. We recommend the Mahalanobis distance technique for mapping animal use areas when animals are distributed optimally, the landscape is well-sampled to determine the mean habitat vector, and distributions of the habitat variables does not change.

Journal of Agricultural, Biological, and Environme↗

USGS2022

Morbidity and mortality of Hawaiin geese (Branta sandvicensis) and Laysan albatross (Phoebastria immutabilis) associated with reticuloendotheliosis virus

Only one virus, Avipox, has been documented previously in wild birds in Hawaii. Using immunohistochemistry and PCR, we found that two native threatened Hawaiian Geese ( Branta sandvicensis ), one with multicentric histiocytoma and the other with toxoplasmosis, and one Laysan Albatross ( Phoebastria immutabilis ) with avian pox were infected with reticuloendotheliosis virus (REV). The virus was isolated from one of the geese by cell culture. Surveys of other Hawaiian geese with various pathologies, avian pox cases, and pox viral isolates using PCR failed to reveal REV, suggesting that the virus is uncommon, at least in samples examined. The full genome of the Gag, Pol, and Env genes were sequenced for all three infected birds and revealed geographic divergence of the Pol gene, suggesting it to be under strong selective pressure. Our finding of REV in Hawaii makes this only the second virus documented in native Hawaiian birds associated with pathology. Moreover, the presence of REV in a pelagic seabird is unusual. Future surveys should seek the reservoir of the virus in efforts to trace its origins.

Journal of Wildlife Diseases↗

USGS2016

Roost site selection by ring-billed and herring gulls

Gulls ( Larus spp.) commonly roost in large numbers on inland and coastal waters, yet there is little information on how or where gulls choose sites for roosting. Roost site selection can lead to water quality degradation or aviation hazards when roosts are formed on water supply reservoirs or are close to airports. Harassment programs are frequently initiated to move or relocate roosting gulls but often have mixed results because gulls are reluctant to leave or keep returning. As such, knowledge of gull roost site selection and roosting ecology has applied and ecological importance. We used satellite telemetry and an information-theoretic approach to model seasonal roost selection of ring-billed ( L. delawarensis ) and herring gulls ( L. argentatus ) in Massachusetts, USA. Our results indicated that ring-billed gulls preferred freshwater roosts and will use a variety of rivers, lakes, and reservoirs. Herring gulls regularly roosted on fresh water but used salt water roosts more often than ring-billed gulls and also roosted on a variety of land habitats. Roost modeling showed that herring and ring-billed gulls selected inland fresh water roosts based on size of the water body and proximity to their last daytime location; they selected the largest roost closest to where they ended the day. Management strategies to reduce or eliminate roosting gulls could identify and try to eliminate other habitat variables (e.g., close-by foraging sites) that are attracting gulls before attempting to relocate or redistribute (e.g., through hazing programs) roosting birds.

Massachusetts↗

USGS1997

Geology and preliminary dating of the hominid-bearing sedimentary fill of the Sima de los Huesos Chamber, Cueva Mayor of the Sierra de Atapuerca, Burgos, Spain

Sediments of the Sima de los Huesos vary greatly over distances of a few meters. This is typical of interior cave facies, and caused by cycles of cut and fill. Mud breccias containing human bones, grading upwards to mud containing bear bones, fill an irregular surface cut into basal marls and sands. The lack of bedding and the chaotic abundance of fragile speleothem clasts in the fossiliferous muds suggests that the deposit was originally a subterranean pond facies, and that after emplacement of the human remains, underwent vigorous post-depositional rotation and collapse and brecciation, caused by underlying bedrock dissolution and undermining. The fossiliferous deposits are capped by flowstone and guano-bearing muds which lack large-mammal fossils. U-series and radiocarbon dating indicates the capping flowstones formed from about 68 ka to about 25 ka. U-series analyses of speleothem clasts among the human fossils indicate that all are at, or close to, isotopic equilibrium (>350 ka). The distribution of U-series dates for 25 bear bones (154±66 ka) and for 16 human bones (148±34 ka) is similar and rather broad. Because the human bones seem to be stratigraphically older than those of the bears, the results would indicate that most of the bones have been accumulating uranium irregularly with time. Electron spin resonance (ESR) analyses of six selected bear bones indicates dates of 189±28 ka, for which each is concordant with their corresponding U-series date (181±41 ka). Combined ESR and U-series dates for these samples yielded 200±4 ka. Such agreement is highly suggestive that uranium uptake in these bones was close to the early-uptake (EU) model, and the dates are essentially correct. Another three selected samples yielded combined ESR–U-series dates of 320±4 ka with a modeled intermediate-mode of uranium uptake. The dating results, therefore, seem to provide a firm minimum age of about 200 ka for the human entry; and suggestive evidence of entry before 320 ka.

Journal of Human Evolution↗

USGS2021

Highly efficient, rapid, and concurrent removal of toxic heavy metals by the novel 2D hybrid LDH–[Sn2S6]

According to a United Nations report, by 2050 nearly six billion people worldwide will suffer from clean water scarcity. This is mostly because of the exponential proliferation of world population, urbanization, industrialization, and water pollution. Heavy metals are common water pollutants that can pose grave public health consequences. Existing water purification systems are lack of materials that have the potential for quick, simultaneous, efficient, and cost-efficient removal of numerous toxic metals from wastewater. Here, we report the design and synthesis of an economically viable Layered Double Hydroxides - Stannic Sulfide, LDH–[Sn 2 S 6 ] that exhibits a rapid, efficient, selective, and concurrent removal of Cu 2+ , Ag + , Cd 2+ , Pb 2+ , and Hg 2+ from parts per million (ppm) level to below 5 parts per billion (ppb) satisfying World Health Organization’s (WHO) safe drinking water limit. Moreover, LDH–[Sn 2 S 6 ] shows exceptionally high removal efficiencies of the above metals in acidic, neutral, and basic conditions. LDH–[Sn 2 S 6 ] also demonstrates enormous sorption capacities of 378, 978, 332, 579, and 666 mg/g for Cu 2+ , Ag + , Cd 2+ , Pb 2+ , and Hg 2+ , respectively. Remarkably, LDH–[Sn 2 S 6 ] displays extraordinary tolerance to the concentrations of Na + , Ca 2+ , Mg 2+ , Cl - , CO 3 2– , NO 3 – ,and SO 4 2- , and other constituents in tap and river water, it efficiently sequestrates Cu 2+ , Ag + , Cd 2+ , Pb 2+ , and Hg 2+ from ppm to safe drinking water levels in minutes. LDH–[Sn 2 S 6 ] shows pseudo-second-order sorption kinetics suggesting chemisorption adsorption mechanism involving M−S bonding. Altogether, the regeneratable LDH–[Sn 2 S 6 ] becomes an exceptional material that shows ultrahigh removal, unprecedented selectivity, rapid adsorption kinetics , wide pH stability, and a massive adsorption capacity. The integration of these features places LDH–[Sn 2 S 6 ] at the top of all adsorbents known to date and thus could be used for wastewater purifications.

Chemical Engineering Journal↗

USGS2014

Neoproterozoic–Cambrian stratigraphic framework of the Anti-Atlas and Ouzellagh promontory (High Atlas), Morocco

In the last two decades, great progress has been made in the geochronological, chrono- and chemostratigraphic control of the Neoproterozoic and Cambrian from the Anti-Atlas Ranges and the Ouzellagh promontory (High Atlas). As a result, the Neoproterozoic is lithostratigraphically subdivided into: (i) the Lkest-Taghdout Group (broadly interpreted at c. 800–690 Ma) representative of rift-to-passive margin conditions on the northern West African craton; (ii) the Iriri (c. 760–740 Ma), Bou Azzer (c. 762–697 Ma) and Saghro (c. 760?–610 Ma) groups, the overlying Anezi, Bou Salda, Dadès and Tiddiline formations localized in fault-grabens, and the Ouarzazate Supergroup (c. 615–548 Ma), which form a succession of volcanosedimentary complexes recording the onset of the Pan-African orogeny and its aftermath; and (iii) the Taroudant (the Ediacaran–Cambrian boundary lying in the Tifnout Member of the Adoudou Formation), Tata, Feijas Internes and Tabanite groups that have recorded development of the late Ediacaran–Cambrian Atlas Rift. Recent discussions of Moroccan strata to select new global GSSPs by the International Subcommissions on Ediacaran and Cambrian Stratigraphy have raised the stratigraphic interest in this region. A revised and updated stratigraphic framework is proposed here to assist the tasks of both subcommissions and to fuel future discussions focused on different geological aspects of the Neoproterozoic–Cambrian time span.

Journal of African Earth Sciences↗

USGS1982

U.S. Geological Survey Federal-State Program

The U.S. Geological Survey Federal-State Cooperative Water Resource Program is a partnership between the Geological Survey and State and local agencies for the collection of the hydrologic information needed for the continuing determination and evaluation of the quantity, quality, and use of the Nation's water resources. The first Cooperative Program was started in 1895; the Congress gave formal recognition to the partnership in 1928 and authorized Federal funding of not more than 50 percent for cooperative programs with the Geological Survey, with total funding over $80 million. The process of project selection in the Cooperative Water Resource Program is a mutual effort in which Geological Survey represents national interests, including the needs of other Federal agencies, and the cooperator represents State and local interests. The result is a balanced program that involves careful evaluation of needs, priorities, and resources. A number of typical examples of projects within the Cooperative Program are presented.

Journal of Water Resources Planning and Management↗

USGS2015

Transport, dam passage, and size selection of adult Atlantic Salmon in the Penobscot River, Maine

Prior to 2012, returning adult Atlantic Salmon Salmo salar had to pass through fishways at three dams in the lower section of the Penobscot River, Maine: Veazie Dam (river kilometer [rkm] 48; removed in 2013), Great Works Dam (rkm 60; removed in 2012), and Milford Dam (rkm 62). To facilitate better passage through the lower river, a fish transport program was implemented in 2010 and 2011. Fish were captured at Veazie Dam and were either transported by truck above Milford Dam (TRKD group) or released into the head pond above Veazie Dam (run-of-the-river [ROR] group). To assess the efficacy of transport, we used PIT telemetry to compare the performance and passage of TRKD and ROR fish based on their (1) success in reaching one of the three dams upstream of Milford Dam, (2) time taken to reach an upstream dam (transit time), and (3) success in passing that upstream dam. In both years, the percentage of fish detected at upstream dams was higher for the TRKD group (82.4% in 2010; 78.6% in 2011) than for the ROR group (41.3% in 2010; 22.4% in 2011). In addition, median transit time was faster for TRKD fish (7 d in 2010; 5 d in 2011) than for ROR fish (23 d in 2010; 25 d in 2011). However, passage success through the upstream dams did not differ between the two release groups. Our analysis also revealed a strong, negative size-selective force on dam passage: larger fish were consistently less likely to successfully pass dams than smaller fish. Finally, environmental conditions also influenced passage success. Our analysis shows that the transport of adult Atlantic Salmon can be an effective means by which to increase migration success in systems where upstream passage is poor.

Maine↗

USGS2015

The effects of harvest regulations on behaviors of duck hunters

Uncertainty exists as to how duck harvest regulations influence waterfowl hunter behavior. We used the U.S. Fish and Wildlife Service’s Parts Collection Survey to examine how harvest regulations affected behaviors of Central Flyway duck hunters. We stratified hunters into ranked groups based on seasonal harvest and identified three periods (1975–1984, 1988–1993, 2002–2011) that represented different harvest regulations (moderate, restrictive, and liberal, respectively; season length and daily bag limits smallest in restrictive seasons and largest in liberal seasons). We examined variability of seven measures of duck hunter behaviors across the periods: days harvesting ducks, daily harvest, hunter mobility, mallard ( Anas platyrhynchos ) selectivity, gender selectivity, daily female mallard harvest, and timing of harvest. Hunters reported harvesting ducks on more days, at a higher efficiency, and in slightly more counties during liberal seasons relative to restrictive and moderate seasons. We provide evidence to suggest that future regulation change will affect hunter behaviors.

Human Dimensions of Wildlife: An International Jou↗

USGS2007

Quantifying urban intensity in drainage basins for assessing stream ecological conditions

Three investigations are underway, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program, to study the relation between varying levels of urban intensity in drainage basins and in-stream water quality, measured by physical, chemical, and biological factors. These studies are being conducted in the vicinities of Boston (Massachusetts), Salt Lake City (Utah), and Birmingham (Alabama), areas where rapid urbanization is occurring. For each study, water quality will be sampled in approximately 30 drainage basins that represent a gradient of urban intensity. This paper focuses on the methods used to characterize and select the basins used in the studies. It presents a methodology for limiting the variability of natural landscape characteristics in the potential study drainage basins and for ranking the magnitude of human influence, or urbanization, based on land cover, infrastructure, and socioeconomic data in potential study basins. Basin characterization efforts associated with the Boston study are described for illustrative purposes.

Alabama, Massachusetts, Utah↗

USGS2024

Invisible hand of sampling for management: Underlying needs to survey a threatened seabird can bias aggregated data

Aim Surveying for a species of concern ahead of proposed activities that alter its habitat is routine practice in conservation and management. Such surveys may accumulate large datasets that could further elucidate trends in abundance and distribution. However, the as-needed surveying of proposed activities may impart a sample site selection bias on the data if used for another purpose. Management of a threatened, forest-nesting seabird offered an example of this. Here we assessed how resource management planning and survey requirements can bias clearance monitoring survey data collected prior to proposed timber harvests, if those data are used for other purposes. Location Oregon and Washington, USA. Taxon Marbled Murrelet ( Brachyramphus marmoratus ). Methods To assess how timber planning and other factors influenced marbled murrelet survey location selection, we used logistic regression models to examine habitat associations of marbled murrelet survey sites ( n = 9178) encompassing proposed timber harvests, and the survey stations ( n = 38,923) therein, across the murrelet's inland range in Washington and Oregon, USA between 1989 and 2021. We then simulated the effect this selective sampling might have on assessments of occupancy trends. Results Most habitat characteristics considered did influence where surveys were located, with distance to roads often being the strongest predictor of survey location. The strength of selection for each covariate changed over time, such that a habitat characteristic strongly influenced location selection in a year but was less influential in another year. The simulation analysis suggested that the non-random selection of survey sites could profoundly bias assessments of occupancy trends. Conclusions When using these clearance monitoring survey data– or any data–beyond their original purpose, careful consideration should be given to the scope of inference provided and analytical methods used, to ensure that observed trends are the product of biological processes and not biased by sampling artefacts.

Oregon, Washington↗