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At least 541 records · Page 30Linked to original sources
USGS2025

Food web structure of the Lake Superior fish community in 2021–2022

The trophic linkages and ecological requirements of the Lake Superior fish community have not been assessed on a whole lake scale in over a decade. Here, we investigated the trophic dynamics across multiple species and habitat zones of Lake Superior. From April to October of 2021 and 2022, a total of five piscivore, four planktivore, and six benthivore species were collected by region and length class during bottom-trawl, standard gillnet, commercial cisco gillnet, and recreational angler surveys. To assess trophic linkages, stomach contents were measured to estimate biomass consumed and a multivariate analysis was used to assess diet composition by species, length, and region. We found a high degree of interconnectedness in the Lake Superior food web, with Mysis as a critical diet item for most fishes. Native piscivore diets varied by region and with ontogeny. Lake charr were important habitat couplers in the lake, exhibiting a diverse diet and opportunistic foraging strategy. Conversely, Pacific salmon were more restricted in their foraging. Planktivores and benthivores primarily consumed Mysis , with less reliance on Diporeia compared to previous studies. Lake whitefish and cisco were the exception to this pattern, with broader bathymetric depth distributions represented in their diets. We found the food web to be supported by a predominantly native species assemblage, with redundancies at all trophic levels.

Lake Superior↗
USGS2022

Seismic evidence for magmatic underplating along the Kodiak-Bowie Seamount Chain, Gulf of Alaska

Oceanic crust formed at mid-ocean ridges may be later modified by off-ridge magmatism forming seamounts, guyots, and islands. We investigate processes associated with seamount formation in the Gulf of Alaska Seamount Province using two coincident seismic reflection/wide-angle profiles. A north-south profile crosses the Kodiak-Bowie Seamount Chain and Aja fracture zone (FZ), and an orthogonal east-west profile is located about 90 km south of the seamount chain over Pacific plate oceanic crust. Structure along the profile away from the seamount chain is consistent with typical oceanic crust. Crust in our study region is thinnest (about 5.6 km) at the Aja FZ. Unlike observations from active transform faults, no low-velocity anomaly is observed at the Aja FZ suggesting that the crustal velocities have recovered to normal values through crack closure and crack healing. Higher lower crustal velocities (∼7.3 and > 7.5 km/s) and thicker crust (∼8.5 and ∼7.0 km) are observed near the Pratt and Durgin Seamounts and at the intersection of the Kodiak-Bowie Seamount Chain linear trend, respectively. These observations are attributed to magmatic underplating associated with seamount province magmatism. Lithospheric thickness variations across the Aja FZ may form a barrier or impediment to magmatic flow. The thickest crust (8.5 km) along our two profiles is located on the younger side of the FZ, and we suggest that the majority of magmatism jumped south of the Aja FZ when thinner lithosphere was encountered by the Bowie hot spot. The crustal structure near the Kodiak-Bowie Seamount Chain is most similar to that of other seamounts and guyots that formed on similarly young lithosphere (8–12 Ma). Our results suggest that lithospheric thickness at the time of hot spot interaction has a large control on magmatic underplating at seamounts and seamount provinces.

Alaska↗
USGS2024

Earthquake relocations delineate discrete a fault network and deformation corridor throughout Southeast Alaska and Southwest Yukon

Deformation in southeastern Alaska and southwest Yukon is governed by the subduction and translation of the Pacific-Yakutat plates relative to the North American plate in the St. Elias region. Despite notable historical seismicity and major regional faults, studies of the region between the Fairweather and Denali faults are complicated by glacial coverage and the remote setting. In the last decade, significant improvements have been made to the density of regional broadband seismometer networks. We relocate more than 5,000 earthquakes between 2010 and 2021 in the region of southeastern Alaska and southwestern Yukon utilizing these improved seismic networks. With reductions in catalog uncertainty, particularly in depth, we quantify the thickness of the seismogenic layer in the crust throughout the region and locate seismicity on a shallow network of upper-crustal faults. Relocated earthquakes, combined with an updated focal-mechanism catalog, permit estimating and classifying motion of active faults. This includes mapping the Totschunda-Fairweather “Connector” fault, which plays an important role in explaining regional deformation, and identifying new faults like the Kathleen Lake fault. We draw similarities between our seismic observations and simplified conceptual models of regional tectonics, which describe a dominant transpressional regime and localized slip partitioning. Our results support a hypothesis where current deformation is taking place on a well-defined and evolved network of shallow faults in the corridor between the Totschunda-Fairweather “Connector” and Denali faults.

Alaska, Yukon↗
USGS2012

Detection of a locked zone at depth on the Parkfield, California, segment of the San Andreas fault

The Parkfield, California, segment of the San Andreas fault is transitional in character between the creeping segment of the fault to the northwest and the locked Carrizo Plain segment to the southeast. The rate of shallow fault slip decreases from 25–30 mm/yr northwest of the epicenter of the 1966 Parkfield earthquake to zero at the southeastern end of the 1966 rupture zone. Data from a network of trilateration lines spanning the San Andreas fault near Parkfield and extending to the Pacific coast near San Luis Obispo shed light on the rate of fault slip at depth since the 1966 earthquake. In this study, average rates of line length change and shallow fault slip were inverted to determine the slip rate at depth on the Parkfield fault segment. The fault is taken to be a vertical surface with unknown distribution of strike-slip displacement in an elastic half-space. A striking result of the inversions is that all solutions providing acceptable fits to the data exhibit a locked zone essentially coincident with the rupture surface of the 1966 Parkfield earthquake. The data require that the locked zone extend nearly as far north as the 1966 epicenter; however, the vertical extent of the locked zone is not well resolved. Over much of the Parkfield segment the fault is slipping faster at the earth's surface than it is at seismogenic depths. In order to fit the trilateration measurements it is necessary to include a component of contraction normal to the trend of the San Andreas. The inversion results suggest a spatially uniform normal strain of −0.06 μstrain/yr. The orientation of the contraction is compatible with geologic and seismic evidence of active folding and reverse faulting in the region. The magnitude of the contraction is consistent with convergence rates inferred from global plate motion models.

Journal of Geophysical Research Solid Earth↗
USGS2007

A cold phase of the East Pacific triggers new phytoplankton blooms in San Francisco Bay

Ecological observations sustained over decades often reveal abrupt changes in biological communities that signal altered ecosystem states. We report a large shift in the biological communities of San Francisco Bay, first detected as increasing phytoplankton biomass and occurrences of new seasonal blooms that began in 1999. This phytoplankton increase is paradoxical because it occurred in an era of decreasing wastewater nutrient inputs and reduced nitrogen and phosphorus concentrations, contrary to the guiding paradigm that algal biomass in estuaries increases in proportion to nutrient inputs from their watersheds. Coincidental changes included sharp declines in the abundance of bivalve mollusks, the key phytoplankton consumers in this estuary, and record high abundances of several bivalve predators: Bay shrimp, English sole, and Dungeness crab. The phytoplankton increase is consistent with a trophic cascade resulting from heightened predation on bivalves and suppression of their filtration control on phytoplankton growth. These community changes in San Francisco Bay across three trophic levels followed a state change in the California Current System characterized by increased upwelling intensity, amplified primary production, and strengthened southerly flows. These diagnostic features of the East Pacific "cold phase" lead to strong recruitment and immigration of juvenile flatfish and crustaceans into estuaries where they feed and develop. This study, built from three decades of observation, reveals a previously unrecognized mechanism of ocean-estuary connectivity. Interdecadal oceanic regime changes can propagate into estuaries, altering their community structure and efficiency of transforming land-derived nutrients into algal biomass.

California↗
USGS2008

Recent shallow marine ostracods from high latitudes: Implications for late Pliocene and Quarternary palaeoclimatology

New information about modern high-latitude marine ostracod faunas and about their occurrence in late Pliocene and Quaternary sequences promotes the application of these microfossils to palaeoenvironmental, palaeo-biogeographical and palaeoclimatological problems. Five poorly known species ( Cluthia cluthae, Finmarchinella logani, Roundstonia globulifera, Roundstonia macchesneyi and Semicytherura complanata ) from North Atlantic, North Pacific and Arctic areas are confirmed as extant and are used to demonstrate the potential of marine ostracods as tools for palaeoclimate studies. The genus Bonnyannella Athersuch, 1982 is shown to be a junior synonym of Roundstonia Neale, 1973.

Boreas↗
USGS2010

Turbidity on the shallow reef off Kaulana and Hakioawa watersheds, north coast of Kaho'olawe, Hawai'i: Measurements of turbidity and ancillary data on winds, waves, precipitation, and stream flow discharge, November 2005 to June 2008

The island of Kaho`olawe has particular cultural and religious significance for native Hawaiians. Once known as Kanaloa, the island was a center for native Hawaiian navigation. In the mid-20th century, the island was used as a bombing range by the U.S. Navy, and that practice, along with the foraging by feral goats, led to a near-complete decimation of vegetation. The loss of ground cover led to greatly increased erosion and run-off of sediment-laden water onto the island's adjacent coral reefs. Litigation in 1990 ended the U.S. Navy's use of the island as a bombing range, and in 1994 the island was transferred to the Kaho`olawe Island Reserve Commission (KIRC), http://kahoolawe.hawaii.gov/. As a result of the litigation, the U.S. Navy began a 10-year clean-up effort that was the foundation for the present restoration effort by KIRC (Slay, 2009). The restoration effort is centered on revegetating the island, reducing erosion, and limiting run-off onto adjacent reefs. Restoration efforts to mitigate sediment runoff to streams and gulches by restoring native vegetation and minimizing erosion have focused on two watersheds, Kaulana and Hakioawa, on the northeast and northwest sides of the island, respectively. Stream flow and sediment gages were installed by the U.S. Geological Survey Pacific Islands Water Science Center in each of the watersheds, and a weather station was established upland of the watersheds. For this study, turbidity monitors were installed on the insular shelf off the two watersheds to monitor the overall quality of reef waters and their changes in response to rain and stream flow discharge events.

Hawaii↗
USGS2022

Passage of adult coho salmon (Oncorhynchus kisutch) over Lake Creek Falls, Oregon, 2019

Across the Pacific Northwest, there are many examples of artificial structures created to allow passage of upstream-migrating salmon over natural barriers. We studied upstream passage across three structures installed in 1989 to allow passage of salmon over Lake Creek Falls, a series of three natural waterfalls at the outlet of Triangle Lake on Lake Creek, in the central Oregon Coast Range (lat 123.57508°; long 44.15735°). To track upstream passage by adult coho salmon ( Oncorhynchus kisutch ), 87 fish were tagged using gastrically implanted radio tags. Tracking was accomplished with a series of stationary receivers installed to detect crossings at each of three structures—over Lake Creek Falls using two upstream Denil-type ladders and a bypass downstream constructed to mimic a natural side channel. Tracking spanned the upstream migration and spawn timing for adult coho salmon in the basin and extended from October 2019 to February 2020. A total of 15 coho salmon (17 percent) were tagged in October, 30 coho salmon (35 percent) were tagged in November, and 42 coho salmon (48 percent) were tagged in December. Later-than-normal precipitation and associated low discharge delayed upstream migrations. Accordingly, most fish arrived late in the season (late November and December) and in sudden flushes with the erratic rain events. Fish that were tagged earlier were more likely to cross all three ladders, with more than 93 percent of fish tagged in October compared to 46.7 and 19.0 percent of November and December fish passing, respectively. The decline in passage rate could be attributed to the overlapping influences of stream discharge and advanced stage of maturation (lower energy reserves) of fish later in the season. Near the end of the study, both fish that crossed and fish obstructed by barriers were observed in tributaries known to be used for spawning by coho salmon. Without a much longer-term study involving many more fish than the current study, more intensive tracking, and coverage of different flow years, firm conclusions are difficult to draw regarding the overall influences of the passage structures on the likelihood of upstream passage by adult coho salmon. However, substantial numbers of fish are capable of crossing during certain conditions. The population-level consequences of the barriers on spawning distribution and the production of coho salmon in the watershed are not clear. Additional empirical study or population modeling could be used to address this question in more detail.

Oregon↗
USGS2025

Northward migrations of nonbreeding Bald Eagles from Arizona, USA.

Knowledge of the spatiotemporal patterns of migratory and nonbreeding-season movements by animals is critical for conservation, but can be difficult to obtain if animals move far from known breeding territories and across administrative and country borders. To understand the migratory movements of Bald Eagles ( Haliaeetus leucocephalus ) originating from a demographically closed population in Arizona, USA, we deployed GPS transmitters on 24 juveniles and 2 nonbreeding adult eagles between 2017 and 2023. We identified common migration routes, stopover locations, and migration phenology. Eagles moved north from Arizona during the population's post-breeding period in the boreal spring and summer, and returned south in autumn in advance of the breeding season. Eagles migrated along two primary routes: (1) along the Wasatch Mountains in Utah and extending into the Rocky Mountains of southern Idaho, and (2) through eastern Nevada and along the Rocky Mountains in western and northern Idaho. Stopover locations were frequently near lakes and rivers. Recent fledglings began migration later than older individuals and 15 of 16 of these juveniles that survived until the following breeding season returned to Arizona. The individual that did not return showed evidence of permanent emigration to northern California. Our results contribute to a growing understanding of avian migration routes within the Pacific Flyway and the diverse migration strategies, including northward migration following the breeding season, exhibited across raptor populations. We highlight that explicit studies of juveniles, subadults, and nonbreeding adults are key to understanding avian migration dynamics and identifying opportunities for conservation.

Arizona↗
USGS2005

Resource inventory of marine and estuarine fishes of the West Coast and Alaska: A checklist of North Pacific and Arctic Ocean species from Baja California to the Alaska - Yukon border

This is a comprehensive inventory of the fish species recorded in marine and estuarine waters between the Alaska–Yukon Territory border in the Beaufort Sea and Cabo San Lucas at the southern end of Baja California and out about 300 miles from shore. Our westernmost range includes the eastern Bering Sea and Aleutian Islands. In addition, we have also included our best impressions of the species that might reasonably be expected to be members of the West Coast ichthyofauna but have not yet been captured or reported within our study area. These species are marked with an asterisk (*) and have been reported (1) in the western Bering Sea; (2) off Canada’s Yukon Territory and adjacent portions of the Northwest Territories; (3) along the southern-eastern tip (non-Pacific side) of Baja California; and (4) in waters somewhat beyond 300 miles from shore. Although the term West Coast usually refers to the coast of the continuous western states, our usage herein means the entire study area. The West Coast inventory within this range encompasses fish fauna from 44 orders, 232 families, and a minimum of 1,450 species. Please note that introduced and invasive fish species are marked by double asterisks (**) and that their scientific names are highlighted in gray. We have compiled this document because the most geographically inclusive previous inventories (Jordan and Evermann 1896a, Jordan et al. 1930) are largely of historical interest and are out of date. More recent lists and compilations have either focused on relatively narrow taxonomic groups (e. g., Kramer et al. 1995, Love et al. 2002), are regional in scope (e. g., Hart 1973, Hubbs et al. 1979, Mecklenburg et al. 2002), or focus on commonly observed species (e. g., Miller and Lea 1972, Eschmeyer and Herald 1983). With the explosion of coastal research and environmental assessments, beginning in the 1970s, and more recently, renewed scientific interest in biodiversity (e.g., effects of global climate change), our own studies on related subjects regarding fish populations, assemblages, and biological habitats, suggested this was the appropriate time to update and summarize our knowledge.

Report↗
USGS2024

Cycles in adult steelhead length suggest interspecific competition in the North Pacific Ocean

Anadromous fishes rely on abundant prey in the ocean to grow large quickly, but prey limitation leads to interspecific competition. When species interactions are difficult to observe, growth can be studied to detect otherwise cryptic signals of competition. We describe a previously undocumented two-year cycle in the lengths of adult natural-origin steelhead ( Oncorhynchus mykiss ) returning to spawn in the Snake River Basin. Returning steelhead were 38 mm shorter on odd return years, not accounting for sex, stock, and years of ocean residence. The well-known cycle in abundance of Pink Salmon from eastern Kamchatka and North America had statistically significant negative effects on returning steelhead lengths that depended on sex and the number of years of ocean residence. These results suggest that competition for limited resources occurs well after initial ocean entry and that interactions during later stages of ocean residence can be influential. Interspecific competition has implications for future returns of steelhead from the ocean, especially as metabolic demands for steelhead increase as the ocean warms.

North Pacific Ocean↗
USGS2015

Study 8: Prevalence and load of Nanophyetus salmincola infection in outmigrating steelhead trout from five Puget Sound rivers

Nanophyetus salmincola is a parasitic trematode, or flatworm, that infects salmonid fishes in the Pacific Northwest, including Washington, Oregon, and portions of California. The adult worm lives in the intestine of fish-eating birds and mammals. Eggs shed into the water hatch into miracidia which penetrate the first intermediate host, one of two species of snail Juga plicifera or J. silicula . Asexual reproduction occurs within the snail. Free-swimming cercaria are released from the snail and penetrate the secondary intermediate host, often a salmonid fish, in fresh and brackish water. The cercaria encyst as metacercaria in various organs of the fish, including gills, muscle and heart, but favor the posterior kidney. Penetration and migration by the cercaria through the fish causes damage to nearly every organ system. Once encysted, metacercaria survive the ocean phase of salmonid life cycle. N. salmincola is a likely contributor to mortality of juvenile coho salmon ( Oncorhynchus kisutch ) during the early ocean rearing phase, and it is the most prevalent pathogen of outmigrating steelhead in the estuaries of the Pacific Northwest. A field survey was implemented from March-June 2014 to compare the prevalence and parasite load of N. salmincola infections in outmigrating steelhead from five Puget Sound watersheds and to assess changes in infection levels that occurred during the smolt out-migration through each watershed. N. salmincola infection prevalence and parasite loads were determined by counting metacercaria in posterior kidney samples. Tissue samples were collected and examined by standard histological methods.

Washington↗
USGS2018

Fall and winter microhabitat use and suitability for spring chinook salmon parr in a U.S. Pacific Northwest River

Habitat degradation has been implicated as a primary threat to Pacific salmon Oncorhynchus spp. Habitat restoration and conservation are key toward stemming population declines; however, winter microhabitat use and suitability knowledge are lacking for small juvenile salmonids. Our objective was to characterize microhabitat use and suitability for spring Chinook Salmon Oncorhynchus tshawytscha parr during fall and winter. Using radiotelemetry techniques during October–February (2009–2011), we identified fall and winter microhabitat use by spring Chinook Salmon parr in Catherine Creek, northeastern Oregon. Tagged fish occupied two distinct gradient reaches (moderate and low). Using a mixed‐effects logistic regression resource selection function (RSF) model, we found evidence that microhabitat use was similar between free‐flowing and surface ice conditions. However, habitat use shifted between seasons; most notably, there was greater use of silt substrate and areas farther from the bank during winter. Between gradients, microhabitat use differed with greater use of large wood (LW) and submerged aquatic vegetation in the low‐gradient reach. Using a Bayesian RSF approach, we developed gradient‐specific habitat suitability criteria. Throughout the study area, deep depths and slow currents were most suitable, with the exception of the low‐gradient reach where moderate depths were optimal. Near‐cover coarse and fine substrates were most suitable in the moderate‐ and low‐gradient reaches, respectively. Near‐bank LW was most suitable throughout the study area. Multivariate principal component analyses (PCA) indicated co‐occurring deep depths supporting slow currents near cover were intensively occupied in the moderate‐gradient reach. In the low‐gradient reach, PCA indicated co‐occurring moderate depths, slow currents, and near‐bank cover were most frequently occupied. Our study identified suitable and interrelated microhabitat combinations that can guide habitat restoration for fall migrant and overwintering Chinook Salmon parr in Catherine Creek and potentially the Pacific Northwest.

Oregon↗
USGS2009

Toxicity of two insecticides to California, USA, anurans and its relevance to declining amphibian populations

Contaminants have been associated with population declines of several amphibian species in California (USA). Pesticides from the Central Valley of California are transported by winds into the Sierra Nevada Mountains and precipitate into wet meadows where amphibians breed. The present study examined the chronic toxicity of two of the insecticides most commonly used in the Central Valley and found in the mountains, chlorpyrifos and endosulfan, to larval Pacific treefrogs (Pseudacris regilla) and foothill yellow-legged frogs (Rana boylii) and discusses the implications of this toxicity to declining amphibian populations. Larvae were exposed to the pesticides from Gosner stages 25 to 26 through metamorphosis. The estimated median lethal concentration (LC50) for chlorpyrifos was 365 ??g/L in P. regilla and 66.5 ??g/L for R. boylii. Time to metamorphosis increased with concentration of chlorpyrifos in both species, and cholinesterase activity declined with exposure concentration in metamorphs of both species at Gosner stages 42 to 46. For endosulfan, the estimated LC50 was 15.6 ??g/L for P. regilla and 0.55 ??g/L for R. boylii. All R. boylii exposed to concentrations of greater than 0.8 ??g/L died before they entered metamorphosis. Pseudacris regilla remains relatively abundant and is broadly distributed throughout California. In contrast, R. boylii is among the species experiencing severe population declines. The present study adds to the increasing evidence that pesticides are very harmful to amphibians living in areas that are miles from sources of pesticide application. ?? 2009 SETAC.

Environmental Toxicology and Chemistry↗
USGS2018

Little islands recording global events: Late Quaternary sea level history and paleozoogeography of Santa Barbara and Anacapa Islands, Channel Islands National Park, California

Marine terraces are common on the Pacific Coast of North America and record interglacial high-sea stands superimposed on either stable or tectonically rising crustal blocks. Despite many years of study of these landforms in southern California, little work on terraces has been conducted on the two smallest of the California Channel Islands, Santa Barbara Island (SBI) and Anacapa Island (ANA). Presented here are new field and laboratory data on the ages, paleontology, and sea level history of marine terraces of these two islands. On both islands, the lowest marine terraces have shoreline angle elevations of ∼11 m above sea level. Amino acid geochronology shows that terrace deposits on both islands host fossils of two ages, one group dating to the ∼120-ka high-sea stand and the other group likely dating to the ∼100-ka high-sea stand. A mix of fossil ages is consistent with the paleontology as well, with SBI in particular showing a faunal assemblage that includes both extralimital southern and southward-ranging species (inferred to be from the ∼120-ka high-sea stand) and extralimital northern and northward-ranging species (inferred to be from the ∼100-ka high-sea stand). Fossil mixing from these two high-sea stands supports the hypothesis that glacial isostatic adjustment (GIA) processes have left a strong imprint on the geologic record of sea level history in southern California. Nevertheless, the elevations of these terraces and that of a low terrace on Santa Cruz Island indicate that modeled GIA estimates of paleo-sea level for the peak of the last interglacial period at ∼120 ka could be too high. Future development of models of GIA effects on the Pacific Coast of North America will need to consider geologic records, such as those from SBI and ANA, in refining reconstructions of sea level history.

California↗
USGS2015

Persistence of external signs in Pacific herring Clupea pallasii Valenciennes with ichthyophoniasis

The progression of external signs of Ichthyophonus infection in Pacific herring Clupea pallasii Valenciennes was highly variable and asynchronous after intraperitoneal injection with pure parasite preparations; however, external signs generally persisted through the end of the study (429 days post-exposure). Observed signs included papules, erosions and ulcers. The prevalence of external signs plateaued 35 days post-exposure and persisted in 73–79% of exposed individuals through the end of the first experiment (147 days post-exposure). Among a second group of infected herring, external signs completely resolved in only 10% of the fish after 429 days. The onset of mortality preceded the appearance of external signs. Histological examination of infected skin and skeletal muscle tissues indicated an apparent affinity of the parasite for host red muscle. Host responses consisted primarily of granulomatous inflammation, fibrosis and necrosis in the skeletal muscle and other tissues. The persistence and asynchrony of external signs and host response indicated that they were neither a precursor to host mortality nor did they provide reliable metrics for hindcasting on the date of exposure. However, the long-term persistence of clinical signs in Pacific herring may be useful in ascertaining the population-level impacts of ichthyophoniasis in regularly observed populations.

Journal of Fish Diseases↗
USGS1905

The petroleum fields of the Pacific coast of Alaska, with an account of the Bering River coal deposits

This report contains the result of a hasty examination of the structural and economic geology of the localities where indications of petroleum have been found. Though only a few wells have been drilled and it is too soon to predict an important future for the region as a petroleum producer, studies have shown that there is ample justification for further prospecting and that the region may yet be an important source of illuminating oil. In this connection it is of interest to note that the Bering River coal is the best that has yet been found on the Pacific coast of North America. These coal and petroleum fields have been deemed of sufficient importance to justify the further investigation already begun, and it is hoped that this, together with the commercial development, will soon permit of more definite statements regarding the economic importance of this field.

Alaska↗
USGS2017

Infectious hematopoietic necrosis virus virological and genetic surveillance 2000–2012

Surveillance records of the acute RNA pathogen of Pacific salmonid fish infectious hematopoietic necrosis virus are combined for the first time to enable landscape-level ecological analyses and modeling. The study area is the freshwater ecosystems of the large Columbia River watershed in the U.S. states of Washington, Oregon, and Idaho, as well as coastal rivers in Washington and Oregon. The study period is 2000–2012, and records were contributed by all five resource management agencies that operate conservation hatcheries in the study area. Additional records from wild fish were collected from the National Wild Fish Health Survey, operated by the U.S. Fish and Wildlife Survey. After curation and normalization, the data set consists of 6766 records, representing 1146 sample sites and 15 different fish hosts. The virus was found in an average of 12.4% of records, and of these 66.2% also have viral genetic analysis available. This data set is used to conduct univariate ecological and epidemiological analyses and develop a novel hierarchical landscape transmission model for an aquatic pathogen.

Ecology↗