SEARCH · Search USGS

Results for “Biologist”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 541 records · Page 30Linked to original sources

USGS1996

Concordance of seabird population parameters: Analytical methods and interpretation

In an ecological context, concordance may be defined as the tendency for paired values of some parameter, such as the annual productivity of bird species, to show similar directions and magnitudes of deviation from the mean. Where concordance among populations is high, there is an implied similarity of the ecological factors affecting performance. Conversely, if populations behave discordantly, dissimilarity of underlying ecological factors is likely. In evaluating birds as indicators of the marine environment, the biologist typically is confronted with a three-dimensional array of observations (species, areas, and years) in which there are more missing values than filled cells. This frustrates attempts to analyze concordance using existing methods (e.g., Kendall's coefficient, or correlation combined with cluster analysis), which are either impossible to apply to incomplete data sets or potentially misleading when applied to incomplete data sets. I suggest an alternative method for analyzing concordance that makes maximal use of available data. For a given data set partitioned into the smallest units containing information about concordance, one computes an index of concordance using a regression approach and tests for significance using randomization methods. This procedure would seem to have wide application to ecological studies generally and to seabird monitoring in particular.

Conference Paper↗

USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗

USGS2013

Data management challenges in species distribution modeling

An important component in the fields of ecology and conservation biology is understanding the environmental conditions and geographic areas that are suitable for a given species to inhabit. A common tool in determining such areas is species distribution modeling which uses computer algorithms to determine the spatial distribution of organisms. Most commonly the correlative relationships between the organism and environmental variables are the primary consideration. The data requirements for this type of modeling consist of known presence and possibly absence locations of the species as well as the values of environmental or climatic covariates thought to define the species habitat suitability at these locations. These covariate data are generally extracted from remotely sensed imagery, interpolated/gridded historical climate data, or downscaled climate model output. Traditionally, ecologists and biologists have constructed species distribution models using workflows and data that reside primarily on their local workstations or networks. This workflow is becoming challenging as scientists increasingly try to use these modeling techniques to inform management decisions under different climate change scenarios. This challenge stems from the fact that remote sensing products, gridded historical climate, and downscaled climate models are not only increasing in spatial and temporal resolution but proliferating as well. Any rigorous assessment of uncertainty requires a computationally intensive sensitivity analysis accounting for various sources of uncertainty. The scientists fitting these models generally do not have the background in computer science required to take advantage of recent advances in web-service based data acquisition, remote high-powered data processing, or scientific workflow systems. Ecologists in the field of modeling are in need of a tractable platform that abstracts the inherent computational complexity required to incorporate the burgeoning field of coupled climate and ecological response modeling. In this paper we describe the computational challenges in species distribution modeling and solutions using scientific workflow systems. We focus on the Software for Assisted Species Modeling (SAHM) a package within VisTrails, an open-source scientific workflow system.

Bulletin of the Technical Committee on Data Engine↗

USGS2017

Developing multi-model ensemble projections of ecologically relevant climate variables for Puerto Rico and the US Caribbean

The global increases in surface air temperature are the most widespread and direct consequence of anthropogenic climate change. However, while 21st century temperatures are projected to increase in the Caribbean, the low variability and high average temperatures suggest that impacts on ecosystems and water resources are more likely through changes to the availability, timing, and pattern of moisture. The lack of local-scale climate model information that can resolve the complex topography and small scale climate features hinders the development of robust adaptation strategies. The goal of this project was to develop a suite of local-scale climate projections using dynamic downscaling to aid the development of adaptation strategies in Puerto Rico and the U.S. Virgin Islands (USVI). This project began by engaging the ecologists, hydrologists, and conservation biologists in the region to determine the most valuable types of information to aid research and decision making. The final product provides projections of future climate at a 2km horizontal resolution based on three global climate models and two regional climate models for a scenario with high greenhouse gas emissions. Results from the projections suggest that for Puerto Rico, annual temperature would increase between 1°C and 1.3°C by mid-century with larger temperature increases located in the interior portion of the island. Precipitation totals decrease for much of the island with island average decline between 12% and 19%, with some potentially large localized decreases exceeding 30%. The projected changes for the USVI are dominated by the surrounding ocean environment. The resulting projections will be provided to stakeholders in the region via the USGS and the CLCC.

Puerto Rico↗

USGS2014

Strategic conservation planning for the Eastern North Carolina/Southeastern Virginia Strategic Habitat Conservation Team

The Eastern North Carolina/Southeastern Virginia Strategic Habitat Conservation Team (ENCSEVA) is a partnership among local federal agencies and programs with a mission to apply Strategic Habitat Conservation to accomplish priority landscape-level conservation within its geographic region. ENCSEVA seeks to further landscape-scale conservation through collaboration with local partners. To accomplish this mission, ENCSEVA is developing a comprehensive Strategic Habitat Conservation Plan (Plan) to provide guidance for its members, partners, and collaborators by establishing mutual conservation goals, objectives, strategies, and metrics to gauge the success of conservation efforts. Identifying common goals allows the ENCSEVA team to develop strategies that leverage joint resources and are more likely to achieve desired impacts across the landscape. The Plan will also provide an approach for ENCSEVA to meet applied research needs (identify knowledge gaps), foster adaptive management principles, identify conservation priorities, prioritize threats (including potential impacts of climate change), and identify the required capacity to implement strategies to create more resilient landscapes. ENCSEVA seeks to support the overarching goals of the South Atlantic Landscape Conservation Cooperative (SALCC) and to provide scientific and technical support for conservation at landscape scales as well as inform the management of natural resources in response to shifts in climate, habitat fragmentation and loss, and other landscape-level challenges (South Atlantic LCC 2012). The ENCSEVA ecoregion encompasses the northern third of the SALCC geography and offers a unique opportunity to apply landscape conservation at multiple scales through the guidance of local conservation and natural resource management efforts and by reporting metrics that reflect the effectiveness of those efforts (Figure 1). The Environmental Decision Analysis Team, housed within the North Carolina Cooperative Fish and Wildlife Research Unit at North Carolina State University, is assisting the ENCSEVA team in developing a scientifically sound basis for the Plan though the elicitation of expert knowledge and the organization of that knowledge using the Open Standards for the Practice of Conservation. The Open Standards for the Practice of Conservation is a framework that is well suited to incorporating decision-making tools such as Structured Decision Making and provides a multi-step process to conceptually organize conservation projects in a manner that enhances the rigor and transparency of expert and knowledge-based plans. It helps define explicit pathways from 2 planned conservation activities and ultimate impact, as well as indicators to measure success (Stem et al. 2005). Specifically, the framework identifies conservation targets, key ecological attributes, threats, and associated indicators to monitor responses given the implementation of a conservation action (Conservation Measures Partnership 2007). This report serves to provide a scientific foundation for the Plan by summarizing the expert opinion of wildlife biologists, ecologists, hydrologists, researchers, natural resource managers, and conservation practitioners regarding five environments (wetlands, riverine systems, estuaries, uplands, and barrier islands) within the ENCSEVA geography. Specifically, this report describes (1) the approach to elicit expert knowledge meant to support the strategic plan, (2) how this knowledge can inform collaborative conservation planning, and (3) a summary of opportunities available for the ENCSEVA team to address threats and impacts associated with climate change within the ecoregion.

Technical Bulletin↗

USGS2013

Tagging methods for estimating population size and mortality rates of inland striped bass populations

Striped bass Morone saxatilis in inland reservoirs play an important role ecologically and in supporting recreational fishing. To manage these populations, biologists need information about abundance and mortality. Abundance estimates can be used to assess the effectiveness of stocking programs that maintain most reservoir striped bass populations. Mortality estimates can indicate the relative impact of fishing versus natural mortality and the need for harvest regulation. The purpose of this chapter is to evaluate tagging studies as a way of obtaining information about abundance and mortality. These approaches can be grouped into three broad categories: tag recapture, tag return, and telemetry. Tag-recapture methods are typically used to estimate population size and other demographic parameters but are often difficult to apply in large systems. A fishing tournament can be an effective way of generating tagging or recapture effort in large systems, compared to using research sampling only. Tag-return methods that rely on angler harvest and catch and release can be used to estimate fishing (F) and natural (M) mortality rates and are a practical approach in large reservoirs. The key to success in tag-return studies is to build in auxiliary studies to estimate short-term tagging mortality, short- and longterm tag loss, reporting rate, and mortality associated with catch and release. F and M can also be estimated using telemetry tags. Advantages of this approach are that angler nonreporting does not bias estimates and fish with transmitters provide useful ecological data. Cost can be a disadvantage of telemetry studies; thus, combining telemetry tags with conventional tag returns in an integrated analysis is often the optimal approach. In summary, tagging methods can be a powerful tool for assessing the effectiveness of inland striped bass stocking programs and the relative impact of fishing versus natural mortality

American Fisheries Society Symposium↗

USGS2015

Mottled duck (Anas fulvigula) movements in the Texas Chenier Plain Region

As a surrogate species for Strategic Habitat Conservation, the mottled duck (Anas fulgivula) is an indicator species to coastal marsh health and function. Currently, biologists have a relatively poor understanding of regional mottled duck movements. We outfitted adult female mottled ducks with solar satellite transmitters during summer 2009–2011. Movement patterns were measured among years and phenology, in relation to available habitat at the landscape level, and in association to potential disturbance. Movement distances were measured in ArcGIS and then evaluated using analysis of variance for independent variables of year, month, biological time period, and season. Average weekly distances traveled by mottled ducks were relatively short (<5,000m) compared to other waterfowl. Movement occurrence and distance were linked to biological season with longest distances documented during the molt period. Movements also differed among years, with drought conditions associated with longer movement distances. Magnitude of movements may be an indicator of habitat quality for mottled ducks in the Texas Chenier Plain Region. By focusing on providing large freshwater pools and fresh/intermediate marsh during the molt period, managers could positively impact mottled ducks.

Texas↗

USGS2017

Guidance documents: Continued support to improve operations of fish hatcheries and field sites to reduce the impact or prevent establishment of New Zealand Mudsnails and other invasive mollusks

This project tested and revised a risk assessment/management tool authored by Moffitt and Stockton designed to provide hatchery biologists and others a structure to measure risk and provide tools to control, prevent or eliminate invasive New Zealand mudsnails (NZMS) and other invasive mollusks in fish hatcheries and hatchery operations. The document has two parts: the risk assessment tool, and an appendix that summarizes options for control or management. The framework of the guidance document for risk assessment/hatchery tool combines approaches used by the Hazard Analysis and Critical Control Points (HACCP) process with those developed by the Commission for Environmental Cooperation (CEC), of Canada, Mexico, and the United States, in the Tri-National Risk Assessment Guidelines for Aquatic Alien Invasive Species. The framework approach for this attached first document assesses risk potential with two activities: probability of infestation and consequences of infestation. Each activity is treated equally to determine the risk potential. These two activities are divided into seven basic elements that utilize scientific, technical, and other relevant information in the process of the risk assessment. To determine the probability of infestation four steps are used that have scores reported or determined and averaged. This assessment follows a familiar HACCP process to assess pathways of entry, entry potential, colonization potential, spread potential. The economic, environmental and social consequences are considered as economic impact, environmental impact, and social and cultural influences. To test this document, the Principal Investigator worked to identify interested hatchery managers through contacts at regional aquaculture meetings, fish health meetings, and through the network of invasive species managers and scientists participating in the Western Regional Panel on Aquatic Nuisance Species and the 100th Meridian Initiative's Columbia River Basin Team, and the Western New Zealand Mudsnail Conference in Seattle. Targeted hatchery workshops were conducted with staff at Dworshak National Fish Hatchery Complex (ID), Similkameen Pond, Oroville WA, and Ringold Springs State Hatchery (WA). As a result of communications with hatchery staff, invasive species managers, and on site assessments of hatchery facilities, the document was modified and enhanced. Additional resources were added to keep it up to date. The result is a more simplified tool that can lead hatchery or management personnel through the process of risk assessment and provide an introduction to the risk management and communication process. In addition to the typical HACCP processes, this tool adds steps to rate and consider uncertainty and the weight of evidence regarding options and monitoring results . Uncertainty of outcome exists in most tools that can be used to control or prevent NZMS or other invasive mollusks from infesting an area. In additional this document emphasizes that specific control tools and plans must be tailored to each specific setting to consider the economic, environmental and social influences. From the testing and evaluation process, there was a strong recognition that a number of control and prevention tools previously suggested and reported in the literature from laboratory and small scale trials may not be compatible with regional and national regulations, economic constraints, social or cultural constraints, engineering or water chemistry characteristics of each facility. The options for control are summarized in the second document, Review of Control Measures for Hatcheries Infested with NZMS (Appendix A) that provides sources for additional resources and specific tools, and guidance regarding the feasibility and success of each approach. This tool also emphasizes that management plans need to be adaptive and incorporate oversight from professionals familiar with measuring risks of fish diseases, and treatments (e.g. the fish health practitioners and water quality and effluent management teams). Finally, with such a team, the adaptive management approach must be ongoing, and become a regular component of hatchery operations. Although it was the intent that this two part document would be included as part of the revised National Management and Control Plan for the NZMS proposed by the U.S. Fish and Wildlife Service (USFWS) and others, it is provided as a stand-alone document.

Cooperator Science Series↗

USGS2008

The desperate dozen: Fishes on the brink

IT IS NO SECRET THAT OUR NATIVE AQUATIC ANIMALS ARE IN DECLINE. There are currently 582 species of animals on the Federal list of endangered and threatened species, 268 of these (46%) are found in freshwater habitats. Of the amazing assemblage of 675 fishes found in southeastern waters, more than a quarter are considered imperiled. While all of the Earth’s ecosystems are in trouble, freshwater habitats are recognized to be at severe risk because of their scarcity and the high demands placed on them by humans. The combined effects of agriculture, damming, dredging, construction, logging, overharvest, and pollution are destroying this critical resource for animals, plants, and even ourselves. This major conservation crisis calls for immediate action to conserve and protect the remaining populations and their habitats. The Southeastern Fishes Council (SFC), a nonprofit scientific organization dedicated to the study and conservation of freshwater and coastal fishes of the southeastern United States, is one of the many organizations attempting to reverse the decline of our southeast aquatic habitats and their rich biodiversity. One of the most important steps in conservation is prioritization. The SFC sought to determine where conservation actions would have the largest impact on preventing loss of our freshwater diversity. We decided to focus our efforts on the Desperate Dozen, the 12 fish species we identified as most likely to become extinct in the Southeast. We chose this list in order to reverse their precipitous decline and assist in putting them on the path to recovery. These twelve species are not currently economically important to humans, and their extinction could easily go unnoticed by all but conservation biologists and ichthyologists. Even so, their conservation matters. These species are the canaries in the coal mine, alerting us to the problem that something is very, very wrong in our backyards. Fishes that were once widespread in larger rivers, such as the diamond darter, are now suffering from the same water quality issues that cause harm to humans. Fishes that were once used for commercial gain, such as the Alabama sturgeon, are now too rare for harvest. We have ignored our freshwater to the point where we no longer remember that rivers used to be more common than reservoirs in the Southeast, and our diversity was a resource worth protecting. It is SFC’s goal to use this list to raise awareness of the plight of our freshwater habitats in the Southeast, which include rivers, creeks, wetlands, springs, and caves. The current crisis requires education, communication, and coordination among our neighbors. We have to learn how to prevent harm to our watersheds and develop new collaborations between private and public entities to promote wise development. By highlighting these twelve species, ranging from the spring pygmy sunfish to the Alabama sturgeon, we hope to encourage these partnerships to address the needs of our freshwater animals and hopefully prevent them from slipping quietly into extinction. SFC created a list of the most imperiled southeastern fishes by considering species with the highest risk of extinction. Criteria used, in order of importance, was distribution (a single population ranked highest), low abundance, and severity of threats. After the ranking based on level of imperilment, species were arranged in phylogenetic order so that all would receive equal attention. Experts on each species provided brief accounts on the Desperate Dozen, which include background, distribution, abundance, threats, and proposed conservation actions. The U.S. Fish and Wildlife Service (USFWS) was not consulted in SFC’s identification of the Desperate Dozen fishes, as we intentionally chose to work as an independent scientific panel under the criteria stated above.

Report↗

USGS2011

Status and management of moose in the northeastern United States

Moose (Alces alces) populations have recolonized much of their historic range in the northeastern United States in the past 30 years, with their southern range edge extending to southern New England and northern New York. This southerly expansion occurred when certain other populations in the United States were in decline along the southern range edge, with climate change often cited as a probable cause. The areas that moose have recently occupied in the northeastern United States are some of the most densely human populated in moose range, which has raised concern about human safety and moose-vehicle collisions (MVC). We conducted a literature search about moose in the northeastern United States, and distributed a questionnaire and conducted phone interviews with regional biologists responsible for moose management to determine the status of moose, management activity, and research deficiencies and needs. Moose numbers appear stable throughout much of the region, with slow population growth in northern New York. Management activity ranges from regulated harvest of moose in Maine, New Hampshire, and Vermont, to no active management in southern New England and New York. The combined annual harvest in Maine, New Hampshire, and Vermont is >3,000. MVCs are a widespread regional concern with >1,000 occurring annually involving several human fatalities. Research should address impacts of parasitism by winter tick (Dermacentor albipictus) and brain-worm (Parelaphostrongylus tenuis) on productivity and mortality of moose, influence of climate change on population dynamics and range, and conflicts in areas with high human population density.

Alces↗

USGS1981

Food of the Pacific white-sided dolphin, Lagenorhynchus obliquidens, Dall's porpoise, Phocoenoides dalli, and northern fur seal, Callorhinus ursinus, off California and Washington

Our knowledge of the feeding habits of the Pacific white-sided dolphin, Lagenorhynchus obliquidens , and the Dall's porpoise, Phocoenoides dalli , is based on examination of the stomach contents of stranded animals, animals accidentally taken in commercial fishing gear, those taken in the western Pacific commercial fishery, and animals that died during capture attempts. Of these only a few were normally feeding animals taken at sea, whose stomach contents were thoroughly examined. Fished and squids previously identified from stomachs of dolphins and porpoises by various investigators are listed in Table 1. This paper documents the stomach contents of 44 Pacific white-sided dolphin and 9 Dall's porpoise collected at sea off California and Washington. All animals were collected by the authors during pelagic fur seal studies with the exception of three dolphins which were collected by a staff biologist during whale research voyages off California. Comparisons of stomach contents are made between the Pacific white-sided dolphins, Dall's porpoise, and northern fur seal, Callorhinus ursinus , collected near the same locations and usually on the same day. Mention of the dolphin, porpoise , and seal in this paper refers to the above-named species unless noted otherwise.

California, Washington↗

USGS2007

Alaskan birds at risk: Widespread beak deformities in resident species

The team creeps silently across a well-tended lawn, eyes drawn to a small wooden box perched several meters up a lone birch tree. The first biologist is armed with a broom in one hand and a bug net in the other. Her partner wields a lunchbox-sized plastic case and a tree-climbing ladder that looks like an oversized radio antenna. A neighbor peers out her window from across the street to watch the unusual spectacle. A small black-and-white bird zips toward the box’s tiny, round opening and both women raise binoculars to their eyes in synchrony. A specific combination of metal and colored plastic bands on the bird’s legs identify this Black-capped Chickadee, which was banded two years earlier as a nestling. “It’s the female,” Colleen Handel whispers, and Lisa Pajot nods as they duck behind the cover of a large spruce tree. The bird - named “Red-white-red”, in reference to her color bands - appeared healthy in the nest as well as the following winter, when she was caught in a mist net set up nearby. The next summer, however, “Red-white-red” appeared at a residential nest box with a severely deformed beak. The overgrowth worsened, and, now, the upper mandible curves down and back toward her breast, while the lower extends up, crossing the upper at a nearly 90-degree angle. The effect is sobering. Even from a distance, this teacup-sized bird carries a conspicuous appendage that more closely resembles a pair of mangled scissors than any recognizable seed-cracking beak.

Alaska↗

USGS2018

Nestling development and aging of Arizona Grasshopper Sparrow

We studied breeding Arizona Grasshopper Sparrow ( Ammodramus savannarum ammolegus ) status and distribution, natural and life history, habitat use, and nest survival from 2004 through 2014 in southeastern Arizona. In this paper we present descriptions and photographs of known-age nestlings that will assist field biologists to identify Arizona Grasshopper Sparrow nestlings to species, more accurately age them for nest survival studies, and conduct more detailed nestling development studies. Our observations of developing characteristics included: eyes, ears, skin, down, major feather tracts, bill, rictal flange and gape colors and patterns, and behavior. More field data collection is required to supplement our information and to determine how broadly applicable this information is to other Grasshopper Sparrow subspecies.

Arizona Birds↗

USGS2019

Report of the technical expert workshop: Developing recommendations for field response, captive management, and rehabilitation of sea turtles with fibropapillomatosis

Fibropapillomatosis (FP) is a disease of sea turtles that primarily manifests as tumors of the skin. Strandings of green turtles with this disease have dramatically increased in the Southeast U.S. over the last decade, necessitating a review of various practices related to the capture, handling, and treatment of afflicted turtles. NOAA and USFWS hosted a workshop in St. Petersburg, Florida on September 6, 2017 to seek input on the development of recommendations to address the following key issues regarding green turtles with FP: 1) disposition when encountered under various circumstances (e.g., strandings, research activities, incidental capture, opportunistic observations); 2) rehabilitation and release; 3) response options if rehabilitation capacity is exceeded; and 4) biosecurity measures to prevent anthropogenic spread of the disease. Federal and state resource agency staff and rehabilitation veterinarians were invited to this workshop to provide input for these recommendations. A review of rehabilitation practices and outcome was shared with participants to inform discussions related to rehabilitation and stranding response. Draft recommendations were prepared for the meeting and participants were asked to share their opinions during moderated discussions and via a written feedback instrument. This input was considered and applied to amend the recommendations, which were also peer-reviewed by six additional veterinarians and a stranding biologist with expertise in sea turtles,rehabilitation medicine, and fibropapillomatosis. The intended use for the completed Fibropapillomatosis and Sea Turtles: Recommendations for Field Response, Captive Management, and Rehabilitation is to assist resource agencies with management planning and decisions related to green turtles with FP and to inform relevant aspects of policy, permits, and authorizations under federal and state regulations.

Florida↗

USGS2021

Vulnerability assessment and adaptation planning for projected changes in water quality and quantity for protected areas in the upper Midwest

Climate change and the extreme weather associated with it can be a major challenge to natural resource managers charged with the protection, restoration, recovery, and management of wetlands and wildlife habitats. Forecasting the potential impacts of climate changes will be important for decision-makers and land managers seeking to minimize impacts to habitats, infrastructure, and wildlife populations and prepare for the future. In collaboration with U.S. Fish and Wildlife Service (FWS) managers, we developed a climate change vulnerability assessment to spatially evaluate climate vulnerabilities across the Midwest region. To create the vulnerability assessment, we convened resource managers and scientists working across the region to determine the components and scope of the vulnerability assessment. The vulnerability assessment was watershed-based and composed of 15 indicators of climate change and five indicators that reflect the capacity of a watershed to buffer against the effects of climate change. The indicators were selected by FWS managers to have broad applicability across systems and programs in the FWS. To facilitate usability, we created an online application that allows users to generate customizable vulnerability assessments. We then integrated the assessment into a process for engaging in climate change adaptation thinking as a precursor to formal planning, implementation, and monitoring of adaptation actions. The process we designed focused on understanding the components of the system, assessing climate change vulnerabilities, creating and describing possible climate change scenarios, and identifying impacts and adaptation options for each scenario. We piloted this process in a virtual workshop setting with FWS managers and biologists on the topic of managed wetland systems. This work is currently being used by the FWS to better understand regional vulnerabilities and adaptation strategies and to advance integration of climate science into formal planning processes.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗

USGS1999

Nesting populations of double-crested cormorants in the United States and Canada

Double-crested cormorants ( Phalacrocorax auritus ) are receiving increasing attention in North America because of depredations at aquaculture facilities and alleged impacts on sport and commercial fisheries. We obtained recent (most since 1994) estimates for the number of nesting double-crested cormorants in the United States and Canada from published references and by conducting telephone interviews with State and Provincial biologists. Using published data, we also determined annual rates of change in the number of cormorants since about 1990. The estimated minimum number of nesting pairs (colonies) of double-crested cormorants was 372,000 (852). Most cormorants nested in the Interior region (68 percent). Overall, double-crested cormorants increased about 2.6 percent annually during the early 1990’s. The greatest decline (−7.9-percent annual change) was in the West Coast–Alaska region. The greatest increase (6.0-percent annual change) was for the Interior region. The increase there was primarily a consequence of a 22-percent annual increase in Ontario and U.S. States bordering the Great Lakes. These baseline population data are essential for monitoring trends in nesting populations and for developing informed management decisions. However, the completeness, quality, and timing of surveys varied substantially among jurisdictions. Population estimates and rates of change should, therefore, be used with caution. Methods and timing of future surveys should be coordinated among political jurisdictions (at least within regions) to improve accuracy of estimates and allow more meaningful comparisons of population status.

Conference Paper↗

USGS2020

Vegetation sampling and management

What is the utility of vegetation measurements for wildlife managers? In the prairie, savanna, tundra, forest, steppe, and wetland regions of the world, mixtures of plant species provide wildlife with food, cover and, in some circumstances, water; the 3 essential habitat elements necessary to sustain viable wildlife populations. We define habitat in reference to use of a vegetation type by an animal (e.g., deer habitat) and vegetation type when referring to differences in vegetation stands (e.g., marsh vegetation type versus tall grass prairie vegetation type; Hall et al. 1997). In strict definition, the variety of wildlife using plants ranges from snails and voles (Microtus spp.) to bison (Bison bison) and elephants (Loxodonta spp.) in uplands and from mosquitoes and ducks to muskrats (Ondatra zibethicus) and manatees (Trichechus manatus) in wetlands. Through evolutionary processes, some wildlife species are totally dependent on vegetation for all annual life requirements, whereas other species use vegetation only for cover or food. Regardless of the role of vegetation in the sustenance of wildlife, any management or research project that requires evaluation of wildlife and vegetation type relationships on a unit of land will necessitate some form of vegetation measurement. The term vegetation can refer to a single plant or species on a specific site or a community in the landscape. Vegetation may occur naturally or be introduced, and may be live or dead. Uses of vegetation measurements are many: (1) evaluation of vegetation response to management practices, (2) estimation of carrying capacity and/or forage production, (3) characterization of cover and habitat components for an endangered species, or (4) long-term monitoring of the general trend of plant vigor or vegetation type condition. Surveying and measuring quantity and quality of vegetation within habitats are basic to wildlife research and management. Grassland, shrubland, and woodland vegetation types are comprised of populations in which individual plants are usually too numerous to inventory completely. Consequently, wildlife biologists usually use sampling techniques to make inferences about the total plant population within a given vegetation type. Vegetation sampling methodologies have evolved within several ecological disciplines (e.g., plant ecology, forestry, rangeland science) and for a variety of management or research objectives (e.g., estimating forage for ungulates, describing habitat use by passerine birds). Description of every method that has been used to sample vegetation is beyond the scope of this chapter. We describe how to measure vegetation structure, which Dansereau (1957) defined as the spatial organization (distribution) of individuals that form a stand. We have organized this chapter into a description of basic methods of vegetation sampling with examples of how those methods have been applied or modified in wildlife research and management. We assume the investigator/reader has adequate knowledge of the concepts of wildlife ecology, primary habitat requirements of wildlife species under study, and ability to systematically identify the species of wildlife and vascular plants within the geographical area of investigation.

Book chapter↗

USGS2020

Effect of environmental factors on the movement of Rainbow Trout in the Deerfield Reservoir System

Spawning movements and the factors affecting those movements are often of interest to fisheries managers and biologists. The objective of this study was to examine the influence of environmental factors on the movements of an adfluvial Rainbow Trout Oncorhynchus mykiss population in the Black Hills, South Dakota. Three unique strains of hatchery-reared Rainbow Trout and resident Rainbow Trout were implanted with passive integrated transponder (PIT) tags and movements between Deerfield Reservoir and the Castle Creek tributary system were monitored from August, 2010-July, 2011. Initial adfluvial movements of Rainbow Trout were detected using a stationary PIT tag reader deployed near the mouth of Castle Creek. Multiple linear regressions were used to model the relationship between PIT tagged Rainbow Trout movement and water temperature, photoperiod, and discharge. Using Akaike’s information criterion (AIC) to compare models, discharge was the top supported model explaining variation in Rainbow Trout movement. Additionally, models containing temperature and photoperiod were also supported. Supported models only explained moderate levels of variation (<23%) in Rainbow Trout movement. Understanding how environmental variables affect the movement patterns of this unique population is essential in determining the proper management strategy for the Deerfield Reservoir system.

South Dakota↗