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Evolution of CAM and C 4 carbon-concentrating mechanisms

Mechanisms for concentrating carbon around the Rubisco enzyme, which drives the carbon-reducing steps in photosynthesis, are widespread in plants; in vascular plants they are known as crassulacean acid metabolism (CAM) and C 4 photosynthesis. CAM is common in desert succulents, tropical epiphytes, and aquatic plants and is characterized by nighttime fixation of CO2. The proximal selective factor driving the evolution of this CO2-concentrating pathway is low daytime CO2, which results from the unusual reverse stomatal behavior of terrestrial CAM species or from patterns of ambient CO2 availability for aquatic CAM species. In terrestrials the ultimate selective factor is water stress that has selected for increased water use efficiency. In aquatics the ultimate selective factor is diel fluctuations in CO2 availability for palustrine species and extreme oligotrophic conditions for lacustrine species. C4 photosynthesis is based on similar biochemistry but carboxylation steps are spatially separated in the leaf rather than temporally as in CAM. This biochemical pathway is most commonly associated with a specialized leaf anatomy known as Kranz anatomy; however, there are exceptions. The ultimate selective factor driving the evolution of this pathway is excessively high photorespiration that inhibits normal C3 photosynthesis under high light and high temperature in both terrestrial and aquatic habitats. CAM is an ancient pathway that likely has been present since the Paleozoic era in aquatic species from shallow-water palustrine habitats. While atmospheric CO2 levels have undoubtedly affected the evolution of terrestrial plant carbon-concentrating mechanisms, there is reason to believe that past atmospheric changes have not played as important a selective role in the aquatic milieu since palustrine habitats today are not generally carbon sinks, and the selective factors driving aquatic CAM are autogenic. Terrestrial CAM, in contrast, is of increasing selective value under extreme water deficits, and undoubtedly, high Mesozoic CO2 levels reduced the amount of landscape perceived by plants as water limited. Late Tertiary and Quaternary reductions in atmospheric CO2, coupled with increasing seasonality, were probably times of substantial species radiation and ecological expansion for CAM plants. C4 photosynthesis occurs in only about half as many families as CAM, and three-fourths of C4 species are either grasses or sedges. Molecular phylogenies indicate C4 is a more recent innovation than CAM and that it originated in the mid-Tertiary, 20–30 Ma, although some data support an earlier origin. While the timing of the origin of C4 remains controversial, the nearly explosive increase in C4 species is clearly documented in the late Miocene, 4–7 Ma. Increasing seasonality has been widely suggested as an important climatic stimulus for this C4 expansion. Alternatively, based on models of photosynthetic quantum yield at different temperatures and CO2 concentration, it has been hypothesized that the late Miocene C4 expansion resulted from declining atmospheric CO2 levels. This model is most appropriate for explaining the transition from C3 grasslands to C4 grasslands but by itself may not be sufficient to explain the more likely scenario of a late Miocene transition from C3 woodland/ savanna to C4 grasslands. A largely unexplored hypothesis is that climatic changes in late Miocene altered disturbance regimes, in particular the incidence of fires, which today are often associated with maintenance of C4 grasslands. Oceanic charcoal sediments that appear to represent Aeolian deposits from continental wildfires follow a strikingly similar pattern of explosive increase in late Miocene. Climate, CO2, and disturbance are not mutually exclusive explanations and probably all acted in concert to promote the expansion of C4 grasslands. More recently, late Quaternary changes in CO2 may have been responsible for driving major changes in the landscape distribution of C4 species. The theory is sound; however, many of the studies cited in support of this model are open to alternative interpretations, and none has eliminated climatic factors as important selective agents. CAM and C4 evolution required coupling of biochemical pathways with structural changes in photosynthetic tissues, succulence in CAM and Kranz in C4. This was apparently accomplished by piecemeal evolution beginning with mechanisms for recapturing respiratory CO2, although this need not have been so in aquatic CAM species. It has been proposed that the extreme rarity of both pathways in the same plant results from biochemical and structural incompatibilities (Sage 2002). Equally important is the fact that the selective environments are quite different, with CAM evolution thriving on stressful sites inhospitable to C3 species whereas C4 evolution has selected for rapid growth capable of outcompeting associated C3 plants.

International Journal of Plant Sciences

An improved understanding of the Alaska coastal current: The application of a bivalve growth-temperature model to reconstruct freshwater-influenced paleoenvironments

Shells of intertidal bivalve mollusks contain sub-seasonally to interannually resolved records of temperature and salinity variations in coastal settings. Such data are essential to understand changing land-sea interactions through time, specifically atmospheric (precipitation rate, glacial meltwater, river discharge) and oceanographic circulation patterns; however, independent temperature and salinity proxies are currently not available. We established a model for reconstructing daily water temperatures with an average standard error of ???1.3 ??C based on variations in the width of lunar daily growth increments of Saxidomus gigantea from southwestern Alaska, United States. Temperature explains 70% of the variability in shell growth. When used in conjunction with stable oxygen isotope data, this approach can also be used to identify changes in past seawater salinity. This study provides a better understanding of the hydrological changes related to the Alaska Coastal Current (ACC). In combination with ??18Oshell values, increment-derived temperatures were used to estimate salinity changes with an average error of 1.4 ?? 1.1 PSU. Our model was calibrated and tested with modern shells and then applied to archaeological specimens. As derived from the model, the time interval of 988-1447 cal yr BP was characterized by ???1-2 ??C colder and much drier (2-5 PSU) summers. During that time, the ACC was likely flowing much more slowly than at present. In contrast, between 599-1014 cal yr BP, the Aleutian low may have been stronger, which resulted in a 3 ??C temperature decrease during summers and 1-2 PSU fresher conditions than today; the ACC was probably flowing more quickly at that time. The shell growth-temperature model can be used to estimate seasonal to interannual salinity and temperature changes in freshwater-influenced environments through time. ?? 2011 SEPM (Society for Sedimentary Geology).

Palaios

Environmental controls, emergent scaling, and predictions of greenhouse gas (GHG) fluxes in coastal salt marshes

Coastal salt marshes play an important role in mitigating global warming by removing atmospheric carbon at a high rate. We investigated the environmental controls and emergent scaling of major greenhouse gas (GHG) fluxes such as carbon dioxide (CO 2 ) and methane (CH 4 ) in coastal salt marshes by conducting data analytics and empirical modeling. The underlying hypothesis is that the salt marsh GHG fluxes follow emergent scaling relationships with their environmental drivers, leading to parsimonious predictive models. CO 2 and CH 4 fluxes, photosynthetically active radiation (PAR), air and soil temperatures, well water level, soil moisture, and porewater pH and salinity were measured during May–October 2013 from four marshes in Waquoit Bay and adjacent estuaries, MA, USA. The salt marshes exhibited high CO 2 uptake and low CH 4 emission, which did not significantly vary with the nitrogen loading gradient (5–126 kg · ha −1 · year −1 ) among the salt marshes. Soil temperature was the strongest driver of both fluxes, representing 2 and 4–5 times higher influence than PAR and salinity, respectively. Well water level, soil moisture, and pH did not have a predictive control on the GHG fluxes, although both fluxes were significantly higher during high tides than low tides. The results were leveraged to develop emergent power law‐based parsimonious scaling models to accurately predict the salt marsh GHG fluxes from PAR, soil temperature, and salinity (Nash‐Sutcliffe Efficiency = 0.80–0.91). The scaling models are available as a user‐friendly Excel spreadsheet named Coastal Wetland GHG Model to explore scenarios of GHG fluxes in tidal marshes under a changing climate and environment.

Massachusetts

Archive of bathymetry data collected at Cape Canaveral, Florida, 2014

Remotely sensed, geographically referenced elevation measurements of the sea floor, acquired by boat- and aircraft-based survey systems, were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida, for the area at Cape Canaveral. The work was conducted as part of a study to describe an updated bathymetric dataset collected in 2014 and compare it to previous data sets. The updated data focus on the bathymetric features and sediment transport pathways that connect the offshore regions to the shoreline and, therefore, are related to the protection of other portions of the coastal environment, such as dunes, that support infrastructure and ecosystems. Cape Canaveral Coastal System (CCCS) is a prominent feature along the Southeast U.S. coastline and is the only large cape south of Cape Fear, North Carolina. Most of the CCCS lies within the Merritt Island National Wildlife Refuge and included within its boundaries are the Cape Canaveral Air Force Station (CCAFS), NASA’s Kennedy Space Center (KSC), and a large portion of Canaveral National Seashore. The actual promontory of the modern cape falls within the jurisdictional boundaries of the CCAFS. Hydrographic survey data were collected August 18-20, 2014 ( USGS Field Activity Number 2014-324-FA ). The study covered a 20 kilometer (km) section of shoreline extending from Port Canaveral, Fla., to the northern end of the KSC property, and from the shoreline to about 2.5 km offshore. Data were acquired using both sound navigation and ranging (sonar) and light detection and ranging (lidar) systems. Two jet skis and a 17-foot (ft) outboard motor boat equipped with the USGS SANDS (System for Accurate Nearshore Depth Surveying) hydrographic system collected precision sonar data. The USGS airborne EAARL-B mapping system flown in a twin engine airplane was used to collect lidar data. The missions were synchronized so that there was temporal and spatial overlap between the sonar and lidar operations. Additional data were collected to evaluate water clarity to verify the ability of lidar to receive bathymetric returns. Both systems used differential Global Positioning System GPS and utilized the National Oceanic and Atmospheric Administration/National Geodetic Survey (NOAA/NGS) Continuously Operating Reference Station (CORS) station located at CCAFS was used as the reference station. This data series serves as an archive of processed single-beam sonar and lidar bathymetry data. Graphical Information System (GIS) data products include XYZ point bathymetry data files, a color coded bathymetry map, and interpolated bathymetry grid surface. Additional information includes an error analysis and formal Federal Geographic Data Committee (FGDC) metadata. For more information about similar projects, please visit the Barrier Island Evolution Web site.

Florida

Enhanced biological processes associated with alopecia in polar bears ( Ursus maritimus )

Populations of wildlife species worldwide experience incidents of mass morbidity and mortality. Primary or secondary drivers of these events may escape classical detection methods for identifying microbial insults, toxin exposure, or additional stressors. In 2012, 28% of polar bears sampled in a study in the southern Beaufort Sea region of Alaska had varying degrees of alopecia that was concomitant with reduced body condition. Concurrently, elevated numbers of sick or dead ringed seals were detected in the southern Beaufort, Chukchi, and Bering seas in 2012, resulting in the declaration of an unusual mortality event (UME) by the National Oceanic and Atmospheric Administration (NOAA). The primary and possible ancillary causative stressors of these events are unknown, and related physiological changes within individual animals have been undetectable using classical diagnostic methods. Here we present an emerging technology as a potentially guiding investigative approach aimed at elucidating the circumstances responsible for the susceptibility of certain polar bears to observed conditions. Using transcriptomic analysis we identified enhanced biological processes including immune response, viral defense, and response to stress in polar bears with alopecia. Our results support an alternative mechanism of investigation into the causative agents that, when used proactively, could serve as an early indicator for populations and species at risk. We suggest that current or classical methods for investigation into events of unusual morbidity and mortality can be costly, sometimes unfocused, and often inconclusive. Advances in technology allow for implementation of a holistic system of surveillance and investigation that could provide early warning of health concerns in wildlife species important to humans.

Science of the Total Environment

Increasing resiliency to natural hazards - A strategic plan for the Multi-Hazards Demonstration Project in Southern California

The U.S. Geological Survey (USGS) is initiating a new project designed to improve resiliency to natural hazards in southern California through the application of science to community decision making and emergency response. The Multi-Hazards Demonstration Project will assist the region’s communities to reduce their risk from natural hazards by directing new and existing research towards the community’s needs, improving monitoring technology, producing innovative products, and improving dissemination of the results. The natural hazards to be investigated in this project include coastal erosion, earthquakes, floods, landslides, tsunamis, and wildfires. Americans are more at risk from natural hazards now than at any other time in our Nation’s history. Southern California, in particular, has one of the Nation’s highest potentials for extreme catastrophic losses due to natural hazards, with estimates of expected losses exceeding $3 billion per year. These losses can only be reduced through the decisions of the southern California community itself. To be effective, these decisions must be guided by the best information about hazards, risk, and the cost-effectiveness of mitigation technologies. The USGS will work with collaborators to set the direction of the research and to create multi-hazard risk frameworks where communities can apply the results of scientific research to their decision-making processes. Partners include state, county, city, and public-lands government agencies, public and private utilities, companies with a significant impact and presence in southern California, academic researchers, the Federal Emergency Management Agency (FEMA), National Oceanic and Atmospheric Administration (NOAA), and local emergency response agencies. Prior to the writing of this strategic plan document, three strategic planning workshops were held in February and March 2006 at the USGS office in Pasadena to explore potential relationships. The goal of these planning sessions was to determine the external organizations’ needs for mitigation efforts before potential natural hazard events, and response efforts during and after the event. On the basis of input from workshop participants, four priority areas were identified for future research to address. They are (1) helping decision makers design planning scenarios, (2) improving upon the mapping of multiple hazards in urban areas, (3) providing real-time information from monitoring networks, and (4) integrating information in a risk and decision-making analysis. Towards this end, short-term and out-year goals have been outlined with the priorities in mind. First-year goals are (1) to engage the user community to establish the structures and processes for communications and interactions, (2) to develop a program to create scenarios of anticipated disasters, beginning in the first year with a scenario of a southern San Andreas earthquake that triggers secondary hazards, (3) to compile existing datasets of geospatial data, and (4) to target research efforts to support more complete and robust products in future years. Both the first-year and out-year goals have been formulated around a working-group structure that builds on existing research strengths within the USGS. The project is intended to demonstrate how developments in methodology and products can lead to improvement in our management of natural hazards in an urban environment for application across the Nation.

Open-File Report

Decadal trends of mercury cycling and bioaccumulation within Everglades National Park

Mercury (Hg) contamination has been a persistent concern in the Florida Everglades for over three decades due to elevated atmospheric deposition and the system's propensity for methylation and rapid bioaccumulation. Given declines in atmospheric Hg concentrations in the conterminous United States and efforts to mitigate nutrient release to the greater Everglades ecosystem, it was vital to assess how Hg dynamics responded on temporal and spatial scales. This study used a multimedia approach (water and biota) to examine Hg and methylmercury (MeHg) dynamics across a 76-site network within the southernmost portion of the region, Everglades National Park (ENP), from 2008 to 2018. Atmospheric Hg deposition was evaluated over time using a long-term monitoring station. Hg concentrations across matrices showed that air, water, and biota from the system were inextricably linked. Temporal patterns across matrices were driven primarily by hydrologic and climatic changes in the park and no evidence of a decline in atmospheric Hg deposition from 2008 to 2018 was observed, unlike other regions of the United States. In the Shark River Slough (SRS), excess dissolved organic carbon and sulfate were also consistently delivered from upgradient canals and showed no evidence of decline over the study period. Within the SRS a strong positive correlation was observed between MeHg concentrations in surface water and resident fish. Within distinct geographic regions of ENP (SRS, Marsh, Coastal), the geochemical controls on MeHg dynamics differed and highlighted regions susceptible to higher MeHg bioaccumulation, particularly in the SRS and Coastal regions. This study demonstrates the strong influence that dissolved organic carbon and sulfate loads have on spatial and temporal distributions of MeHg across the ENP. Importantly, improved water quality and flow rates are two key restoration targets of the nearly 30-year Everglades restoration program, which if achieved, this study suggests would lead to reduced MeHg production and exposure.

Florida

Seabed maps showing topography, ruggedness, backscatter intensity, sediment mobility, and the distribution of geologic substrates in quadrangle 5 of the Stellwagen Bank National Marine Sanctuary region offshore of Boston, Massachusetts

The U.S. Geological Survey, in cooperation with the National Marine Sanctuary Program of the National Oceanic and Atmospheric Administration, has conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary (SBNMS) region since 1993. The area being mapped using geophysical and geological data includes the SBNMS and the surrounding region, which totals approximately 3,700 square kilometers (km 2 ) and is subdivided into 18 quadrangles. The seabed is a glaciated terrain that is topographically and texturally diverse. Quadrangle 5, the subject of this scientific investigations map, has an area of 211 km 2 and has water depths that range from 23 meters (m) on the Stellwagen Bank crest to 105 m in the Stellwagen Basin. Seven map types, each at a scale of 1:25,000, depict seabed topography, ruggedness, backscatter intensity, distribution of geologic substrates, sediment mobility, distribution of fine- and coarse-grained sand, and substrate mud content. These maps show the distribution of geologic substrates on the crest and western flank of the south-central part of Stellwagen Bank and in Stellwagen Basin to the west. Interpretations of multibeam sonar bathymetric and seabed backscatter imagery, photographs, video imagery, and grain-size analyses were used to create the geology-based maps. Data from 729 stations were analyzed, including 620 sediment samples. The geologic substrate maps of quadrangle 5 show the distribution of 20 substrates that represent a wide range of textures, such as mobile and rippled sand, immobile sand, sand that partially veneers gravel, boulder ridges, and mud. Mapped substrates are characterized by sediment grain-size composition, surface morphology, substrate layering, the mobility or immobility of substrate surfaces, and water depth range. This scientific investigations map portrays the major geological elements (substrates, topographic features, and processes) of environments in quadrangle 5. It is intended to provide a foundation for research into present and past sediment transport processes in a complex terrain, provide insights into the ecological requirements of invertebrate and vertebrate species that utilize the various substrates, and to support seabed management in the region.

Massachusetts

Use of short-term (5-Minute) and long-term (18-Hour) leaching tests to characterize, fingerprint, and rank mine-waste material from historical mines in the Deer Creek, Snake River, and Clear Creek Watersheds in and around the Montezuma Mining District, Colorado

Precipitation-induced runoff from historical mine-waste located adjacent to the headwaters of the Snake River, Deer Creek, Saints John Creek, Grizzly Gulch, Stevens Gulch, and Leavenworth Creek contributes to the degradation of water quality in these streams. Because historical mine-waste piles have had long-term exposure to the atmosphere, it is surmised that runoff from these piles, induced by meteorological events such as cloudbursts and snowmelt, may cause mobility of acid and metals into a watershed due to dissolution of soluble minerals. For this study, 13 mine-waste composite samples from various mine-wastes in these drainage basins were leached using both a short-term and a long-term leach test. Analytical results from this combination of leach tests are tools that allow the investigator to quantify (fingerprint) which geochemical components could be expected in runoff from these piles if they were leached by a cloudburst (5-minute leach test), as well as what the ?worst-case? geochemical profile would look like if the material were subject to extended leaching and breakdown of the mine-waste material (18-hour leach test). Also, this combination of leach tests allows the geoscientist the ability to see geochemical changes in the mine-waste leachate over time. That is, does the leachate become more or less acidic over time; does the specific conductance increase or decrease; and are there changes in the concentrations of major or trace elements? Further, use of a ranking scheme described herein will aid in prediction of which historical mine-waste piles have the greatest potential for impact on a watershed should runoff occur. Because of long-term weathering of these historical mine-waste piles, geochemical profiles, leachate time-trends, and relative ranking of the mine-wastes produced from analysis of the leachates are Hageman_SIR_2508.doc 1 7/21/2004 2:50 PM indicative of how the mine-waste piles can be expected to act in the environment and may help to identify the ?bad actors??this may aid in understanding the reasons for water-quality differences between the drainages.

Scientific Investigations Report

Analysis of groundwater response to tidal fluctuations, Operable Unit 1, Naval Base Kitsap, Keyport, Washington

Chlorinated volatile organic compounds have affected groundwater beneath a former 9-acre landfill at Operable Unit 1 (OU 1) of Naval Base Kitsap (NBK) Keyport, in Keyport, Washington. The landfill was the primary disposal area for domestic and industrial waste generated by NBK Keyport from the 1930s through 1973. Naval Facilities Engineering Command Northwest, in conjunction with the Environmental Protection Agency, Washington State Department of Ecology, and the Suquamish Tribe, is charged with collecting necessary data to monitor the contamination left in place and to ensure that the site does not pose a risk to human health or the environment. To support these efforts, refined information was collected on how groundwater levels throughout OU 1 respond to tidal fluctuations at this nearshore site adjacent to Liberty Bay, an inlet of Puget Sound. The information was analyzed to determine the optimal times during the semidiurnal and the neap-spring tidal cycles to sample groundwater for contaminants associated with fresh groundwater originating from OU 1. The optimal times for sampling are presumed to be when fresh groundwater flowing seaward is least impeded by elevated tides, and those times are related to predicted tide levels by tidal lags, the durations between low tides, and corresponding low groundwater levels. Discrete groundwater-specific conductance data also were collected to determine if a seawater/freshwater interface was present at any of the monitoring wells, and to inform decisions on the depth at which groundwater should be sampled in existing wells. Groundwater and surface-water levels were monitored at 19 monitoring wells and five adjacent surface-water sites. Specific conductance was monitored in each surface-water site. All time-series data parameters were collected every 15 minutes during a 4-week duration to measure how nearshore groundwater responds to tidal forcing. Time-series data were collected from July 12, 2018, to August 8, 2018, a period that included neap and spring tides. Vertical water-quality profiles were measured once in the screened interval of nine selected monitoring wells. The profiles included measurements at the top, middle, and bottom of each saturated screen interval. Tidal lag times were determined relative to tidal levels in Liberty Bay (rather than in the more nearby Tide Flats) because the predicted tides for the Poulsbo, Washington Station (National Oceanic and Atmospheric Administration [NOAA] Station 9445719) that are used to schedule groundwater sampling represent open-water conditions in the area; a sill that separates Dogfish Bay from the Tide Flats clearly affects the timing and magnitude of low-low tides in the Tide Flats. Calculated tidal lag times were divided into three general groups: (1) wells where groundwater responded to tidal level changes immediately, (2) wells where groundwater responded to tidal level changes within about 2–5 hours, and (3) wells where groundwater had minimal response to tidal level changes. Groundwater levels in the middle group of wells primarily responded in concert with tidal level changes in the Tide Flats rather than tidal level changes in Liberty Bay. An intended sampling depth refinement based on an assessment of transient seawater intrusion was not completed because of a failure to collect specific-conductance time-series data in select wells. Instead, discrete specific-conductance data from this and prior studies were evaluated to determine that the midpoint of well screens in OU 1 wells can be assumed to be a reasonably representative of undiluted groundwater. When sampling during spring (rather than neap) tides (as has generally been the standard practice at OU 1), the optimal time to sample the monitoring wells influenced by tides would be to add the tidal lags presented in this report to the time of the predicted low-low tide for Liberty Bay as measured at NOAA Station 9445719 at Poulsbo, Washington. Sampling schedules for the six wells where groundwater levels were only minimally influenced by tide changes should not be constrained by tidal conditions.

Washington

Seabed maps showing topography, ruggedness, backscatter intensity, sediment mobility, and the distribution of geologic substrates in quadrangle 2 of the Stellwagen Bank National Marine Sanctuary region offshore of Boston, Massachusetts

The U.S. Geological Survey, in cooperation with the National Marine Sanctuary Program of the National Oceanic and Atmospheric Administration, has conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary (SBNMS) region since 1993. The area being mapped using geophysical and geological data includes the SBNMS and the surrounding region, which totals approximately 3,700 square kilometers (km 2 ) and is subdivided into 18 quadrangles. The seabed is a glaciated terrain that is topographically and texturally diverse. Quadrangle 2, the subject of this scientific investigations map, has a mapped area of 209 km 2 and has water depths that range from about 19 meters (m) on the Stellwagen Bank crest to about 68 m in the Stellwagen Basin. Seven map types, each at a scale of 1:25,000, depict seabed topography, ruggedness, backscatter intensity, distribution of geologic substrates, sediment mobility, distribution of fine- and coarse-grained sand, and substrate mud content. These maps show the distribution of geologic substrates across the southwestern part of Stellwagen Bank, in Stellwagen Basin to the west and southwest of the bank, and in Little Stellwagen Basin and the western part of Race Point Channel to the south of the bank. Interpretations of multibeam sonar bathymetric and seabed backscatter imagery, photographs, video imagery, and grain-size analyses were used to create the geology-based maps. Data from 733 stations were analyzed, including 656 sediment samples. The geologic substrate maps of quadrangle 2 show the distribution of 19 geologic substrates that represent a wide range of textures, such as rippled and immobile sand, immobile muddy sand and sandy mud, sand that partially veneers gravel, and a boulder ridge. Mapped substrates are characterized by sediment grain-size composition, surface morphology, substrate layering, the mobility or immobility of substrate surfaces, and water depth range. This scientific investigations map portrays the major geological elements (substrates, topographic features, and processes) of environments in quadrangle 2. It is intended to provide a foundation for research into present and past sediment transport processes in a complex terrain, provide insights into the ecological requirements of invertebrate and vertebrate species that utilize the various substrates, and support seabed management in the region.

Massachusetts

Sediment transport and accretion and the hydrologic environment of Grove Creek near Kenansville, North Carolina

The Grove Creek basin includes an area of about 42 square miles in Duplin County, southeastern North Carolina. This report evaluates sediment transport and sediment-accretion rates in the lowermost 9-mile reach of Grove Creek by using hydrologic, dendrologic, and radioisotopic data collected at seven sites along the study reach. Hydrologic data indicate two discharge frequencies. In the swampiest reaches downstream of site 5, inundation occurs 35 percent of the time; above this site, inundation occurs about 15 percent of the time. For the period from October 1982 through September 1987, overbank flows at site 4 occurred 82 times and lasted a total of 632 days with a maximum duration of 3 months. Distribution of tree species indicates that water-tolerant bald cypress have developed along the lowermost 7 miles of Grove Creek where the flood plain is inundated 35 percent of the time. These swampy conditions have been in existence across limited parts of the flood plain for the last 80 to 150 years. In contrast, the upstream sites have been comparatively dry for the same period. The sediment that is transported in Grove Creek is predominately silt and clay. Measured suspended-sediment concentrations at discharges less than 100 cubic foot per second are less than 15 milligrams per liter; concentrations at higher discharges did not exceed 67 milligrams per liter. Calculated suspended-sediment loads ranged from 75 to 444 tons per year at the various data-collection sites on Grove Creek. Sediment-accretion rates estimated from dendrologic data ranged from 0.03 foot per year to 0.06 foot per year. The highest accretion rates occur in the downstream swampy reaches and are due to channel braiding, low channel gradients and flow velocities, and high frequency and duration percentages of overbank flow, which result in the deposition of clay and silt over wide areas of the flood plain. Sediment-accretion rates along Grove Creek were also estimated by radioisotope methods. Sediment cores from the flood plain showed detectable levels of cesium-137, lead-210, and radium-226. Cesium-137 was not present in the sediment cores below a depth of 10 inches; this indicates a maximum accretion rate of about 0.024 foot per year for the period 1952-87. Lead-210 and radium-226 data from these same sediment cores indicate an average accretion rate of 0.026 foot per year to a depth of about 2 feet. The maximum age of the flood-plain sediment at the 2-foot level is about 80 years. The atmosphere was confirmed as the source of excess lead-210 in flood-plain sediments by nearly matching calculated values of the lead-210 flux at each site with the measured value for atmospheric deposition.

North Carolina

Return flows from beaver ponds enhance floodplain-to-river metals exchange in alluvial mountain catchments

River to floodplain hydrologic connectivity is strongly enhanced by beaver- ( Castor canadensis ) engineered channel water diversions. The hydroecological impacts are wide ranging and generally positive, however, the hydrogeochemical characteristics of beaver-induced flowpaths have not been thoroughly examined. Using a suite of complementary ground- and drone-based heat tracing and remote sensing methodology we characterized the physical template of beaver-induced floodplain exchange for two alluvial mountain streams near Crested Butte, Colorado, USA. A flowpath-oriented perspective to water quality sampling allowed characterization of the chemical evolution of channel water diverted through floodplain beaver ponds and ultimately back to the channel in ‘beaver pond return flows’. Subsurface return flow seepages were universally suboxic, while ponds and surface return flows showed a range of oxygen concentration due to in-situ photosynthesis and atmospheric mixing. Median concentrations of reduced metals: manganese (Mn), iron (Fe), aluminum (Al), and arsenic (As) were substantially higher along beaver-induced flowpaths than in geologically controlled seepages and upstream main channel locations. The areal footprint of reduced return seepage flowpaths were imaged with surface electromagnetic methods, indicating extensive zones of high-conductivity shallow groundwater flowing back toward the main channels and emerging at relatively warm bank seepage zones observed with infrared. Multiple-depth redox dynamics within one focused seepage zone showed coupled variation over time, likely driven by observed changes in seepage rate that may be controlled by pond stage. High-resolution times series of dissolved Mn and Fe collected downstream of the beaver-impacted reaches demonstrated seasonal dynamics in mixed river metal concentrations. Al time series concentrations showed proportional change to Fe at the smaller stream location, indicating chemically reduced flowpaths were sourcing Al to the channel. Overall our results indicated beaver-induced floodplain exchanges create important, and perhaps dominant, transport pathways for floodplain metals by expanding chemically-reduced zones paired with strong advective exchange.

Colorado

Analysis for agreement of the Northern Gulf of Mexico topobathymetric digital elevation model with 3-Dimensional Elevation Program 1/3 arc-second digital elevation models

Topographical differencing and edge-matching analyses were used to evaluate agreement of the Coastal National Elevation Database Applications Project’s Northern Gulf of Mexico topobathymetric digital elevation model (TBDEM) with The National Map 3-Dimensional Elevation Program (3DEP) 1/3 arc-second digital elevation models (DEMs). In addition to topographic map products provided through the National Geospatial Program, the model integrates bathymetric and topobathymetric datasets for three-dimensional (3D) mapping of rivers, lakes, and bays in the upland and intertidal wetlands to offshore environments in coastal zones from the border between Texas and Louisiana to east of Mobile Bay, Alabama. Contoured elevation differences between the Northern Gulf of Mexico TBDEM and the 3DEP 1/3 arc-second DEMs indicate that 85 percent of elevation data in the Northern Gulf of Mexico TBDEM agree (no difference for contoured elevations) between 95 and 100 percent with 3DEP 1/3 arc-second DEMs. Edge matching differences between adjacent Northern Gulf of Mexico TBDEM source projects or between the TBDEM and 3DEP DEMs indicate most seams between integrated and 3DEP DEMs are smooth. Where seams did not match, most differences were in the range of tenths to hundredths of a meter. Valid differences that are greater than plus or minus 2 meters in areas of bathymetric data are found in the Mississippi River, Atchafalaya River, Lower Atchafalaya River, Wax Lake Pass channel, the Vermilion Bay bathymetric datasets, and where topobathymetric datasets are integrated in the model. Areas with positive or negative outlier difference elevations seem to be a result of site conditions that affect light detection and ranging (lidar) waveform return signals, misclassification of surface features, or possibly because of interpolation required to develop a smooth elevation surface. Results of this analysis provide information to help understand model parameters and agreement of the Northern Gulf of Mexico TBDEM developed using different data types from different sources with The National Map 3DEP DEMs. Inclusion of bathymetric and topobathymetric data types in the 3DEP aligns with the mission to respond to growing needs for a wide range of three-dimensional representations of the Nation and supports the U.S. Geological Survey strategy for developing a National Terrain Model to provide hydrographic and elevation data that extend the elevation surface below water bodies. The 3D Nation Requirements and Benefits Study sponsored by the U.S. Geological Survey and National Oceanic and Atmospheric Administration to assess local to regional Tribal, State, and Federal technical requirements, needs, and benefits for using topographic and bathymetric 3DEP elevation data will be used to help develop and refine future program alternatives for 3D elevation data that include a category for bathymetry and topobathymetry. At the time of this report (2019), 3DEP acquisition is specific to topographic lidar that meets lidar DEM specifications and which requires surface-water feature areas to be hydroflattened. Cataloging bathymetric and topobathymetric DEMs as part of the 3DEP will require new specifications for acoustic, lidar, merged acoustic and lidar, and possibly other bathymetric and topobathymetric survey data types.

Alabama, Florida, Louisiana, Mississippi, Texas

Seabed maps showing topography, ruggedness, backscatter intensity, sediment mobility, and the distribution of geologic substrates in quadrangle 3 of the Stellwagen Bank National Marine Sanctuary region offshore of Boston, Massachusetts

The U.S. Geological Survey, in cooperation with the National Marine Sanctuary Program of the National Oceanic and Atmospheric Administration, has conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary (SBNMS) region since 1993. The area being mapped using geophysical and geological data includes the SBNMS and the surrounding region, which totals approximately 3,700 square kilometers (km 2 ) and is subdivided into 18 quadrangles. The seabed is a glaciated terrain that is topographically and texturally diverse. Quadrangle 3, the subject of this scientific investigations map, has a mapped area of 185 km 2 and has water depths that range from about 30 meters (m) on the Stellwagen Bank crest to about 135 m in a basin east of South Ninety Bank, which lies off the eastern margin of Stellwagen Bank. Seven map types, each at a scale of 1:25,000, depict seabed topography, ruggedness, backscatter intensity, distribution of geologic substrates, sediment mobility, distribution of fine- and coarse-grained sand, and substrate mud content. These maps show the distribution of geologic substrates on the southeastern part of Stellwagen Bank, on adjacent banks and basins in deeper water to the east, in the eastern part of Race Point Channel to the south of the bank, and on the northern slope of Cape Cod. Interpretations of multibeam sonar bathymetric and seabed backscatter imagery, photographs, video imagery, and grain-size analyses were used to create the geology-based maps. Data from 309 stations were analyzed, including 279 sediment samples. The geologic substrate maps of quadrangle 3 show the distribution of 21 geologic substrates that represent a wide range of textures, such as rippled sand, immobile sand, immobile muddy sand, sand that partially veneers gravel, and boulder ridges. Mapped substrates are characterized by sediment grain-size composition, surface morphology, substrate layering, the mobility or immobility of substrate surfaces, and water depth range. This scientific investigations map portrays the major geological elements (substrates, topographic features, and processes) of environments in quadrangle 3. It is intended to provide a foundation for research into present and past sediment transport processes in a complex terrain, provide insights into the ecological requirements of invertebrate and vertebrate species that use the various substrates, and support seabed management in the region.

Quadrangle 3 of the Stellwagen Bank National Marin

Assessment of saltwater intrusion in southern coastal Broward County, Florida

Of the counties in southeastern Florida, Broward County has experienced some of the most severe effects of saltwater intrusion into the surficial Biscayne aquifer because, before 1950, most public water-supply well fields in the county were constructed near the principal early population centers located less than 5 miles from the Atlantic Ocean. The construction of major regional drainage canals in the early 20th century caused a lowering of the water table and a gradual inland movement of the saltwater front toward the well fields. The U.S. Geological Survey began field investigations of saltwater intrusion in the Biscayne aquifer of southeastern Broward County in 1939. As part of the present study, the positions of the saltwater front in 1945, 1969, and 1993 were estimated using chloride concentrations of water samples collected between 1939 and 1994 from various monitoring and exploratory wells. The data indicate that, between 1945 and 1993, the saltwater front has moved as much as 0.5 mile inland in parts of the study area. The position and movement of the saltwater front were simulated numerically to help determine which of the various hydrologic factors and water-management features characterizing the coastal subsurface environment and its alteration by man are of significance in increasing or decreasing the degree of saltwater intrusion. Two representational methods were applied by the selection and use of appropriate model codes. The SHARP code simulates the position of the saltwater front as a sharp interface, which implies that no transition zone (a zone in which a gradational change between freshwater and saltwater occurs) separates freshwater and saltwater. The Subsurface Waste Injection Program (SWIP) code simulates a two-fluid, variable-density system using a convective-diffusion approach that includes a representation of the transition zone that occurs between the freshwater and saltwater bodies. The models were applied to: (1) approximately replicate predevelopment and current positions of the interface in the study area; and (2) study the relative importance of various factors affecting the interface position. The model analyses assumed a conceptual model of uniform easterly flow in the aquifer toward points of offshore discharge to tidewater. Measurements of water-table altitude and the depth to the interface in the study area exhibit an interrelation that differes substantially from the classical Ghyben-Herzberg relation. However, both model codes simulated water-table altitudes and interface positions that were generally consistent with the Ghyben-Herzberg relation but differed substantially from observed data. The simulate interface positions were inland of the known positions, and simulate water-table altitudes were higher than measured ones. The SHARP and SWIP simulations were in general agreement with each other when a low value of longitudinal dispersivity was specified in the SWIP simulation and also for higher values of longitudinal dispersivity when modified dispersion algorithms were used in SWIP that greatly reduced the simulated degree of vertical dispersion. Sensitivity analyses performed using the SHARP code indicated simulation results to be relatively insensitive to a substantial change in the specified slope of the base of the aquifer and moderately sensitive to a 150-percent change in net atmospheric recharge to the aquifer (rainfall minus evapotranspiration). Representing well-field pumping by the City of hallandale had only a minor, localized influence on the simulated regional interface position. Using various cross-sectional grid designs in applications of the SWIP code, near convergence of all lines of equal concentrations in the transition zone was achieved within a simulation time of 10 years. The simulated equilibrium interface location was sensitive to substantial spatial variations in the specified hydraulic conductivity values, but was relatively insensitive to seasonal varying

Florida

Arid land monitoring using Landsat albedo difference images

The Landsat albedo, or percentage of incoming radiation reflected from the ground in the wavelength range of 0.5 [mu]m to 1.1 [mu]m, is calculated from an equation using the Landsat digital brightness values and solar irradiance values, and correcting for atmospheric scattering, multispectral scanner calibration, and sun angle. The albedo calculated for each pixel is used to create an albedo image, whose grey scale is proportional to the albedo. Differencing sequential registered images and mapping selected values of the difference is used to create quantitative maps of increased or decreased albedo values of the terrain. All maps and other output products are in black and white rather than color, thus making the method quite economical. Decreases of albedo in arid regions may indicate improvement of land quality; increases may indicate degradation. Tests of the albedo difference mapping method in the Desert Experimental Range in southwestern Utah (a cold desert with little long-term terrain change) for a four-year period show that mapped changes can be correlated with erosion from flash floods, increased or decreased soil moisture, and increases or decreases in the density of desert vegetation, both perennial shrubs and annual plants. All terrain changes identified in this test were related to variations in precipitation. Although further tests of this method in hot deserts showing severe "desertification" are needed, the method is nevertheless recommended for experimental use in monitoring terrain change in other arid and semiarid regions of the world.

Utah

The response of streams in the Adirondack region of New York to projected changes in sulfur and nitrogen deposition under changing climate

Modeling studies project that in the future surface waters in the northeast US will continue to recover from acidification over decades following reductions in atmospheric sulfur dioxide and nitrogen oxides emissions. However, these studies generally assume stationary climatic conditions over the simulation period and ignore the linkages between soil and surface water recovery from acid deposition and changing climate, despite fundamental impacts to watershed processes and comparable time scales for both phenomena. In this study, the integrated biogeochemical model PnET-BGC was applied to two montane forest watersheds in the Adirondack region of New York, USA to evaluate the recovery of surface waters from historical acidification in response to possible future changes in climate and atmospheric sulfur and nitrogen deposition. Statistically downscaled climate scenarios on average project warmer temperatures and greater precipitation for the Adirondack by the end of the century. Model simulations suggest under constant climate, acid-sensitive Buck Creek would gain 12.8 μeq L −1 of acid neutralizing capacity (ANC) by 2100 from large reductions in deposition, whereas acid insensitive Archer Creek is projected to gain 7.9 μeq L −1 of ANC. However, climate change could limit those improvements in acid-base status. Under climate change, a negative offset relative to the ANC increases with no climate change are projected for both streams by 2100. In acid-insensitive Archer Creek the negative offset (−8.5 μeq L −1 ) was large enough that ANC is projected to decrease by −0.6 μeq L −1 , whereas in acid-sensitive Buck Creek, the negative offset (−0.4 μeq L −1 ) resulted in a slight decline of the projected future ANC increase to 12.4 μeq L −1 . Calculated target loads for 2150 for both sites decreased when future climate change was considered in model simulations, which suggests further reductions in acid deposition may be necessary to restore ecosystem structure and function under a changing climate.

New York