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At least 55 records · Page 3Linked to original sources

Addressing potential local adaptation in species distribution models: implications for conservation under climate change

Species distribution models (SDMs) have been criticized for involving assumptions that ignore or categorize many ecologically relevant factors such as dispersal ability and biotic interactions. Another potential source of model error is the assumption that species are ecologically uniform in their climatic tolerances across their range. Typically, SDMs to treat a species as a single entity, although populations of many species differ due to local adaptation or other genetic differentiation. Not taking local adaptation into account, may lead to incorrect range prediction and therefore misplaced conservation efforts. A constraint is that we often do not know the degree to which populations are locally adapted, however. Lacking experimental evidence, we still can evaluate niche differentiation within a species' range to promote better conservation decisions. We explore possible conservation implications of making type I or type II errors in this context. For each of two species, we construct three separate MaxEnt models, one considering the species as a single population and two of disjunct populations. PCA analyses and response curves indicate different climate characteristics in the current environments of the populations. Model projections into future climates indicate minimal overlap between areas predicted to be climatically suitable by the whole species versus population-based models. We present a workflow for addressing uncertainty surrounding local adaptation in SDM application and illustrate the value of conducting population-based models to compare with whole-species models. These comparisons might result in more cautious management actions when alternative range outcomes are considered.

Ecological Applications

Estimation of change in populations and communities from monitoring survey data

Monitoring surveys provide fundamental information for use in environmental decision making by permitting assessment of both current population (or community) status and change in status, by providing a historical context of the present status, and by documenting response to ongoing management. Conservation of species and communities has historically been based upon monitoring information, and prioritization of species and habitats for conservation action often requires reliable, quantitative results. Although many monitoring programs exist for populations, species, and communities, as well as for biotic and abiotic features of the environment, estimation of population and community change from surveys can sometimes be controversial, and demands on monitoring information have increased greatly in recent years. Information is often required at multiple spatial scales for use in geographic information systems, and information needs exist for description of regional patterns of change in populations, communities, and ecosystems. Often, attempts are made to meet these needs using information collected for other purposes or at inappropriate geographic scales, leading to information that is difficult to analyze and interpret. In this chapter, we address some of the constraints and issues associated with estimating change in wildlife species and species groups from monitoring surveys, and use bird surveys as our primary examples.

Book chapter

Sulfolobus islandicus meta-populations in Yellowstone National Park hot springs

Abiotic and biotic forces shape the structure and evolution of microbial populations. We investigated forces that shape the spatial and temporal population structure of Sulfolobus islandicus by comparing geochemical and molecular analysis from seven hot springs in five regions sampled over 3 years in Yellowstone National Park. Through deep amplicon sequencing, we uncovered 148 unique alleles at two loci whose relative frequency provides clear evidence for independent populations in different hot springs. Although geography controls regional geochemical composition and population differentiation, temporal changes in population were not explained by corresponding variation in geochemistry. The data suggest that the influence of extinction, bottleneck events and/or selective sweeps within a spring and low migration between springs shape these populations. We suggest that hydrologic events such as storm events and surface snowmelt runoff destabilize smaller hot spring environments with smaller populations and result in high variation in the S. islandicus population over time. Therefore, physical abiotic features such as hot spring size and position in the landscape are important factors shaping the stability and diversity of the S. islandicus meta-population within Yellowstone National Park.

Wyoming

Quantifying Equid Behavior - A Research Ethogram for Free-Roaming Feral Horses

Feral horses (Equus caballus) are globally distributed in free-roaming populations on all continents except Antarctica and occupy a wide range of habitats including forest, grassland, desert, and montane environments. The largest populations occur in Australia and North America and have been the subject of scientific study for decades, yet guidelines and ethograms for feral horse behavioral research are largely absent in the scientific literature. The U.S. Geological Survey (USGS) Fort Collins Science Center conducted research on the influences of the immunocontraceptive porcine zona pellucida (PZP) on feral horse behavior from 2003-2006 in three discrete populations in the American west. These populations were the Little Book Cliffs Wild Horse Range in Colorado, McCullough Peaks Herd Management Area in Wyoming, and Pryor Mountain Wild Horse Range in Montana; the research effort included over 1,800 hours of behavioral observations of 317 adult free-roaming feral horses. An ethogram was developed during the course of this study to facilitate accurate scientific data collection on feral horse behavior, which is often challenging to quantify. By developing this set of discrete behavioral definitions and a set of strict research protocols, scientists were better able to address both applied questions, such as behavioral changes related to fertility control, and theoretical questions, such as understanding networks and dominance hierarchies within social groups of equids.

Techniques and Methods

Demographic consequences of inbreeding and outbreeding in Arnica montana: A field experiment

1. The genetic constitution of populations may significantly affect demography. Founder populations or isolated remnants may show inbreeding depression, while established populations can be strongly adapted to the local environment. Gene exchange between populations can lead to better performance if heterozygosity levels are restored (heterosis), or to reduced performance if coadapted gene complexes are disrupted (outbreeding depression). 2. Five populations of the self-incompatible perennial Arnica montana (Asteraceae) were analysed for the demographic consequences of inbreeding and of intra- and interpopulation outcrossing, using both small and large populations as donors for the latter. We analysed seed production and seed weight and monitored growth, survival and flowering of offspring introduced as seeds and as 4-week-old seedlings in a 4-year field experiment. 3. Reduced seed set after selfing was probably due to the self-incompatibility system rather than to inbreeding depression. There was a significant increase for seed set after interpopulation crosses, which resulted from the alleviation of low mate availability in one of the small populations. 4. Significant inbreeding depression was observed for growth rates of plants introduced as seedlings. We found significant heterosis for flowering probability of plants introduced as seeds, but for plants introduced as seedlings, heterosis for seedling size and flowering probability was only marginally significant. Outbreeding depression was not observed. 5. The results of this study are important for reinforcement measures in small, remnant populations. Significant differences among populations for all measured fitness components suggest that reinforcement is best achieved using material from several populations. 6. The observed higher survival of seedlings as compared with seeds suggests that it is better to plant individuals than to sow. Sowing, however, is easier and cheaper, and was more likely to eliminate poorly adapted genotypes before they contribute to the next generation.

Journal of Ecology

Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

Acoustic sampling methods are becoming increasingly important in biological monitoring. Sound attenuation is one of the most important dynamics affecting the utility of acoustic data as it directly affects the probability of detection of individuals by acoustic sensor arrays and especially the localization of acoustic signals necessary in telemetry studies. Therefore, models of sound attenuation are necessary to make efficient use of acoustic data in ecological monitoring and assessment applications. Models of attenuation in widespread use are based on Euclidean distance between source and sensor, which is justified under spherical attenuation of sound waves in homogeneous environments. In this paper, I develop a model of sound attenuation based on a non‐Euclidean cost‐weighted distance metric which contains attenuation coefficients that characterize the attenuation of sound due to environmental heterogeneity in the vicinity of an acoustic sensor array. I show that parameters of the proposed attenuation model can be estimated by maximum likelihood using experimental data from an array of fixed sources, thus allowing investigators who use bioacoustic methods to devise explicit models of sound attenuation in situ and apply them to localization of sources and density estimation. In addition, drawing on analogy with spatial capture–recapture models, I argue that parameters of the non‐Euclidean model of attenuation can be estimated when source locations are unknown . Thus, the models can be applied to real field studies which require estimation of attenuation parameters or localization of signals. Models of heterogeneous sound attenuation allow more accurate descriptions of acoustic monitoring data, and therefore should produce more accurate estimates of ecological parameters of interest, including source locations, density, and movement trajectories. Moreover, the ability to test specific hypotheses about the effects of habitat and landscape structure on sound attenuation can improve the design of acoustic monitoring arrays and lead to more efficient deployment of acoustic sensing technology.

Methods in Ecology and Evolution

Common-garden experiment reveals outbreeding depression and region-of-origin effects on reproductive success in a frequently translocated tortoise

Human-mediated animal movement can expose wildlife populations to novel environments. Phenotypic plasticity can buffer against the challenges presented by novel environments, while adaptation to local ecosystems may limit resilience in novel ecosystems. Outbreeding depression during the mixing of disparate gene pools can also reduce reproductive success after long-distance movement. Here, we use a ‘common-garden’ population of gopher tortoises ( Gopherus polyphemus ), translocated from numerous sites across the state of Florida, USA, to a mitigation site in the north-west (panhandle) region to assess whether geographic origin, outbreeding effects, and behavioral plasticity influence reproductive success in this threatened keystone species. We found that females from north-east Florida produced clutches with lower hatching success than females from other regions. We detected regional differentiation in nest site selection behavior in the common environment of the translocation site, though these differences did not mediate the regional effect on hatching success. We also found evidence for outbreeding depression: hatching success declined with increasing parental geographic and genetic distances, dropping from 93% to 67% across the range of observed parental genetic distances. Together, these results suggest that newly admixed populations may suffer reproductive costs due to historical population differentiation, and that undetected outbreeding depression could significantly hamper conservation efforts for this species and others undergoing a variety of human-mediated movements.

Florida

Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish

Life history adaptations and spatial configuration of metapopulation networks allow certain species to persist in extreme fluctuating environments, yet long-term stability within these systems relies on the maintenance of linkage habitat. Degradation of such linkages in urban riverscapes can disrupt this dynamic in aquatic species, leading to increased extinction debt in local populations experiencing environment-related demographic flux. We used microsatellites and mtDNA to examine the effects of collapsed network structure in the endemic Santa Ana sucker Catostomus santaanae of southern California, a threatened species affected by natural flood-drought cycles, ‘boom-and-bust’ demography, hybridization, and presumed artificial transplantation. Our results show a predominance of drift-mediated processes in shaping population structure, and that reverse mechanisms for counterbalancing the genetic effects of these phenomena have dissipated with the collapse of dendritic connectivity. We use approximate Bayesian models to support two cases of artificial transplantation, and provide evidence that one of the invaded systems better represents the historic processes that maintained genetic variation within watersheds than any remaining drainages where C. santaanae is considered native. We further show that a stable dry gap in the northern range is preventing genetic dilution of pure C. santaanae persisting upstream of a hybrid assemblage involving a non-native sucker, and that local accumulation of genetic variation in the same drainage is influenced by position within the network. This work has important implications for declining species that have historically relied on dendritic metapopulation networks to maintain source-sink dynamics in phasic environments, but no longer possess this capacity in urban-converted landscapes.

California

The importance of peripheral populations in the face of novel environmental change

Anthropogenically driven environmental change has imposed substantial threats on biodiversity, including the emergence of infectious diseases that have resulted in declines of wildlife globally. In response to pathogen invasion, maintaining diversity within host populations across heterogenous environments is essential to facilitating species persistence. White-nose syndrome is an emerging fungal pathogen that has caused mass mortalities of hibernating bats across North America. However, in the northeast, peripheral island populations of the endangered northern myotis ( Myotis septentrionalis ) appear to be persisting despite infection while mainland populations in the core of the species range have experienced sharp declines. Thus, this study investigated host and environmental factors that may contribute to divergent population responses. We compared patterns of pathogen exposure and infection intensity between populations and documented the environmental conditions and host activity patterns that may promote survival despite disease invasion. For island populations, we found lower prevalence and less severe infections, possibly due to a shorter hibernation duration compared to the mainland, which may reduce the time for disease progression. The coastal region of the northern myotis range may serve as habitat refugia that enables this species to persist despite pathogen exposure; however, conservation efforts could be critical to supporting species survival in the long term.

Proceedings of the Royal Society B, Biological Sci

Undeveloped and developed phases in the centennial evolution of a barrier-marsh-lagoon system: The case of Long Beach Island, New Jersey

Barrier islands and their associated backbarrier environments protect mainland population centers and infrastructure from storm impacts, support biodiversity, and provide long-term carbon storage, among other ecosystem services. Despite their socio-economic and ecological importance, the response of coupled barrier-marsh-lagoon environments to sea-level rise is poorly understood. Undeveloped barrier-marsh-lagoon systems typically respond to sea-level rise through the process of landward migration, driven by storm overwash and landward mainland marsh expansion. Such response, however, can be affected by human development and engineering activities such as lagoon dredging and shoreline stabilization. To better understand the difference in the response between developed and undeveloped barrier-marsh-lagoon environments to sea-level rise, we perform a local morphologic analysis that describes the evolution of Long Beach Island (LBI), New Jersey, over the last 182 years. We find that between 1840 and 1934 the LBI system experienced landward migration of all five boundaries, including 171 meters of shoreline retreat. Between the 1920s and 1950s, however, there was a significant shift in system behavior that coincided with the onset of groin construction, which was enhanced by beach nourishment and lagoon dredging practices. From 1934 to 2022 the LBI system experienced ~22 meters of shoreline progradation and a rapid decline in marsh platform extent. Additionally, we extend a morphodynamic model to describe the evolution of the system in terms of five geomorphic boundaries: the ocean shoreline and backbarrier-marsh interface, the seaward and landward lagoon-marsh boundaries, and the landward limit of the inland marsh. We couple this numerical modeling effort with the map analysis during the undeveloped phase of LBI evolution, between 1840 and 1934. Despite its simplicity, the modeling framework can describe the average cross-shore evolution of the barrier-marsh-lagoon system during this period without accounting for human landscape modifications, supporting the premise that natural processes were the key drivers of morphological change. Overall, these results suggest that anthropogenic effects have played a major role in the evolution of LBI over the past century by altering overwash fluxes and marsh-lagoon geometry; this is likely the case for other barrier-marsh-lagoon environments around the world.

New Jersey

Unifying population and landscape ecology with spatial capture-recapture

Spatial heterogeneity in the environment induces variation in population demographic rates and dispersal patterns, which result in spatio‐temporal variation in density and gene flow. Unfortunately, applying theory to learn about the role of spatial structure on populations has been hindered by the lack of mechanistic spatial models and inability to make precise observations of population state and structure. Spatial capture–recapture (SCR) represents an individual‐based analytic framework for overcoming this fundamental obstacle that has limited the utility of ecological theory. SCR methods make explicit use of spatial encounter information on individuals in order to model density and other spatial aspects of animal population structure, and they have been widely adopted in the last decade. We review the historical context and emerging developments in SCR models that enable the integration of explicit ecological hypotheses about landscape connectivity, movement, resource selection, and spatial variation in density, directly with individual encounter history data obtained by new technologies (e.g. camera trapping, non‐invasive DNA sampling). We describe ways in which SCR methods stand to advance the study of animal population ecology.

Ecography

Climate change threatens polar bear populations: A stochastic demographic analysis

The polar bear (Ursus maritimus) depends on sea ice for feeding, breeding, and movement. Significant reductions in Arctic sea ice are forecast to continue because of climate warming. We evaluated the impacts of climate change on polar bears in the southern Beaufort Sea by means of a demographic analysis, combining deterministic, stochastic, environment-dependent matrix population models with forecasts of future sea ice conditions from IPCC general circulation models (GCMs). The matrix population models classified individuals by age and breeding status; mothers and dependent cubs were treated as units. Parameter estimates were obtained from a capture-recapture study conducted from 2001 to 2006. Candidate statistical models allowed vital rates to vary with time and as functions of a sea ice covariate. Model averaging was used to produce the vital rate estimates, and a parametric bootstrap procedure was used to quantify model selection and parameter estimation uncertainty. Deterministic models projected population growth in years with more extensive ice coverage (2001-2003) and population decline in years with less ice coverage (2004-2005). LTRE (life table response experiment) analysis showed that the reduction in ?? in years with low sea ice was due primarily to reduced adult female survival, and secondarily to reduced breeding. A stochastic model with two environmental states, good and poor sea ice conditions, projected a declining stochastic growth rate, log ??s, as the frequency of poor ice years increased. The observed frequency of poor ice years since 1979 would imply log ??s ' - 0.01, which agrees with available (albeit crude) observations of population size. The stochastic model was linked to a set of 10 GCMs compiled by the IPCC; the models were chosen for their ability to reproduce historical observations of sea ice and were forced with "business as usual" (A1B) greenhouse gas emissions. The resulting stochastic population projections showed drastic declines in the polar bear population by the end of the 21st century. These projections were instrumental in the decision to list the polar bear as a threatened species under the U.S. Endangered Species Act. ?? 2010 by the Ecological Society of America.

Ecology

Identifying habitat sinks: A case study of Cooper's hawks in an urban environment

We studied a population of Cooper's hawks (Accipiter cooperii) in Tucson, Arizona from 1994 to 2005. High rates of mortality of nestlings from an urban-related disease prompted speculation that the area represented an ecological trap and habitat sink for Cooper's hawks. In this paper, we used estimates of survival and productivity from 11years of monitoring to develop an estimate of the rate of population change, ??, for Cooper's hawks in the area. We used a Cormack-Jolly-Seber approach to estimate survival of breeding hawks, and a stochastic, stage-based matrix to estimate ??. Despite the urban-related disease, the estimate of ?? indicated that the area does not function as a habitat sink for Cooper's hawks (?? = 1.11 ?? 0.047; P = 0.0073 for the null of ?? 1). Because data required to reliably identify habitat sinks are extensive and difficult to acquire, we suggest that the concept of habitat sinks be applied cautiously until substantiated with reliable empirical evidence. ?? 2008 Springer Science+Business Media, LLC.

Urban Ecosystems

Population age and initial density in a patchy environment affect the occurrence of abrupt transitions in a birth-and-death model of Taylor's law

Taylor's power law describes an empirical relationship between the mean and variance of population densities in field data, in which the variance varies as a power, b , of the mean. Most studies report values of b varying between 1 and 2. However, Cohen (2014a) showed recently that smooth changes in environmental conditions in a model can lead to an abrupt, infinite change in b . To understand what factors can influence the occurrence of an abrupt change in b , we used both mathematical analysis and Monte Carlo samples from a model in which populations of the same species settled on patches, and each population followed independently a stochastic linear birth-and-death process. We investigated how the power relationship responds to a smooth change of population growth rate, under different sampling strategies, initial population density, and population age. We showed analytically that, if the initial populations differ only in density, and samples are taken from all patches after the same time period following a major invasion event, Taylor's law holds with exponent b =1, regardless of the population growth rate. If samples are taken at different times from patches that have the same initial population densities, we calculate an abrupt shift of b , as predicted by Cohen (2014a). The loss of linearity between log variance and log mean is a leading indicator of the abrupt shift. If both initial population densities and population ages vary among patches, estimates of b lie between 1 and 2, as in most empirical studies. But the value of b declines to ~1 as the system approaches a critical point. Our results can inform empirical studies that might be designed to demonstrate an abrupt shift in Taylor's law.

Ecological Modelling

Optical characteristics of natural waters protect amphibians from UV-B in the U.S. Pacific Northwest: Reply

Few ecologists would dispute that exposure to high levels of ultraviolet-B radiation (UV-B) is detrimental to organisms. It is well established that UV-B has been a critical factor shaping the physiology ( Blum et al. 1949 , Hansson 2000 ), behavior ( Pennington and Emlet 1986 , van de Mortel and Buttemer 1998 ), and distribution ( Williamson et al. 2001 , Leavitt et al. 2003 ) of many aquatic species. Recently, increasing UV-B caused by stratospheric ozone depletion has stimulated much research on the UV-B sensitivity of a wide variety of taxa, and has been found to cause direct mortality ( Calkins and Thordardottir 1980 , reviewed by Siebeck et al. 1994 ), elevate developmental abnormalities ( Ankley et al. 2002 ), increase susceptibility to disease ( Little and Fabacher 1994 , Kiesecker and Blaustein 1995 ), and change the strength of species interactions ( Sommaruga 2003 ). Increasing levels of UV-B have also been invoked as an explanation for the decline of some amphibian species, and support for this hypothesis has been extrapolated from many laboratory experiments and field studies at individual sites that indicate ambient or enhanced levels of UV-B can increase mortality of embryos and larvae (but see Licht 2003 ). This has been an especially attractive hypothesis for amphibian populations in alpine environments where direct anthropogenic impacts such as habitat modification are limited and ambient levels of UV-B are high ( Blaustein and Wake 1990 , Blaustein et al. 1994 , Alford and Richards 1999 ). However, for all the attention UV-B has received in the context of declining amphibian populations, there is little evidence linking the physiological sensitivity of individuals to actual population dynamics ( Licht 2003 ).

California, Oregon, Washington

Studying the Earth from space

Pictures of the Earth's surface obtained from satellites are providing scientists with new tools to investigate tne Earth and its environment. A growing population and an everexpanding technology place demands on our natural resources. However, man can no longer treat his resources strictly according to immediate economic dictates; a balance must be struck between the short-term demands of technological and industrial development and the long-term effects on the environment. Intelligent development, management, and conservation of resources are goals that represent an unprecedented challenge in the acquisition and use of information.

General Interest Publication

Longitudinal patterns in flathead catfish relative abundance and length at age within a large river: Effects of an urban gradient

We investigated the spatial variation of flathead catfish (Pylodictis olivaris) relative abundance and growth in the 274 km long Kansas River to determine if population dynamics of catfish are related to urbanization. Electrofishing was conducted at 462 random sites throughout the river in summer, 2005-2006 to collect fish. Relative abundance of age 1 fish (???200mm), subadult (>200-400mm) and adult fish (>400 mm) ranged from 0.34 to 14.67 fish h -1 , mean length at age 1 was 165 (range: 128-195) mm total length (TL) and mean length at age 3 was 376 mm TL (range: 293-419mm TL). The proportion of land use within 200 m of the river edge was between 0 and 0.54 urban. River reaches with high relative abundance of age 1 flathead catfish had high relative abundance of subadult and adult catfish. River reaches with fast flathead catfish growth to age 1 had fast growth to age 3. High urban land use and riprap in the riparian area were evident in river reaches near the heavily populated Kansas City and Topeka, Kansas, USA. Reaches with increased number of log jams and islands had decreased riparian agriculture. Areas of low urbanization had faster flathead catfish growth (r = 0.67, p = 0.005). Relative abundance of flathead catfish was higher in more agricultural areas (r = -0.57, p = 0.02). Changes in land use in riverine environments may alter population dynamics of a fish species within a river. Spatial differences in population dynamics need to be considered when evaluating riverine fish populations. Published in 2008 by John Wiley & Sons Ltd.

River Research and Applications

Estimating abundance and simulating fertility control in feral burros

Overabundant populations of feral equids are negatively impacting rangelands in the western United States. To effectively manage these populations, robust estimates of abundance and demography are necessary, as well as cost-effective methods of reducing abundance. We used a double-observer-sightability aerial survey method to estimate the number of feral burros (Equus asinus) occupying the Fort Irwin National Training Center (NTC), California, USA. We examined the efficacy of using porcine zona pellucida (PZP) immunocontraception as a control agent and used matrix population models to simulate how changes in demographic rates would influence abundance. We estimated there were 690 (CI: 618–752) feral burros within the surveyed area, but these are part of a much larger population that is not geographically isolated from those in the survey area. Sighting probabilities ranged from 0.19–0.98 and were most strongly influenced by distance from observer and group size. We estimated age-specific demographic rates at the NTC and compiled mean rates across burro populations in arid environments from the literature. Mean fecundity varied from 0.17 to 0.58 foals per adult female with younger females having lower fecundity. Mean survival was 0.90 for foals, 0.98 for yearlings, and 0.96 for adults. PZP vaccine treatment strategies that suppressed fertility for up to 10 years, predicted that burro abundance would be reduced by 67–88% after 15 years (compared with no treatment), but none of these strategies resulted in population extirpation. Our fieldwork also highlights the difficulty of administering PZP vaccination to large, free-ranging animals. Burro growth rates shifted from increasing to decreasing at adult survival rates below 0.84 and the population was predicted to become extirpated when adult survival declined below 0.60. In the absence of other methods to reduce burro numbers, our findings indicate that current formulations of PZP immunocontraception, which require multiple doses, would be inadequate for controlling population growth rates at the NTC and perhaps elsewhere. Development of longer-term fertility reduction agents and/or more efficient vaccine delivery techniques would likely improve the efficacy of fertility control for overabundant ungulate populations. Lack of geographic closure (physical barriers to migration) further complicates management efforts to reduce burro numbers.

California