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USGS2009

The relative importance of disturbance and exotic-plant abundance in California coastal sage scrub

Many ecosystems of conservation concern require some level of disturbance to sustain their species composition and ecological function. However, inappropriate disturbance regimes could favor invasion or expansion of exotic species. In southern California coastal sage scrub (CSS) fire is a natural disturbance, but because of human influence, frequencies may now be unnaturally high. Other anthropogenic disturbances such as grazing also occur in reserve areas. Managers charged with imposing or tolerating fire or other disturbance within their reserves are concerned that habitat quality may be degraded by an increasing abundance of exotic plants. We used vegetation monitoring data from Camp Pendleton, California, USA, to assess the correlation between past disturbances (frequent fire, agriculture, or grazing and mechanical disturbances) and current exotic species abundance in CSS. We found that disturbance history was only modestly related to exotic abundance overall, but fire frequency showed the strongest association. We also examined whether cover and richness of various native plant life forms (woody species, perennial herbs, and annual herbs) were more strongly influenced by disturbance history or by exotic-plant abundance. Native plant responses varied among life forms, but woody species and annual herbs were generally more strongly and negatively associated with exotic abundance than with disturbance. Effective CSS conservation will require developing means to curb the negative impacts of exotic plants, which may abound with or without severe or recent disturbance. Additionally, more focus should be given to understory herbs showing sensitivity to invasion. Though understudied, native herbs comprise the greatest portion of plant diversity in CSS and are critical to preservation of the community as a whole. ?? 2009 by the Ecological Society of America.

Ecological Applications↗

USGS2006

Vascular Plant and Vertebrate Inventory of Gila Cliff Dwellings National Monument

Executive Summary This report summarizes the results of the first comprehensive biological inventory of Gila Cliff Dwellings National Monument (NM) in western New Mexico. This project was part of a larger effort to inventory plants and vertebrates in eight National Park Service units in Arizona and New Mexico. Our surveys address many of the objectives that were set forth in the monument's natural resource management plan almost 20 years ago, but until this effort, those goals were never accomplished. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Gila Cliff Dwellings NM to document presence of species within the boundaries of the monument. For all taxonomic groups that we studied, we collected 'incidental' sightings on U.S. Forest Service lands adjacent to the monument, and in a few cases we did formal surveys on those lands. Because we used repeatable study designs and standardized field techniques, these inventories can serve as the first step in a biological monitoring program for Gila Cliff Dwellings NM and surrounding lands. We recorded 552 species at Gila Cliff Dwellings NM and the surrounding lands (Table 1). We found no non-native species of reptiles, birds, or mammals, one non-native amphibian (American bullfrog), and 33 non-native plants. Particularly on lands adjacent to the monument we found that the American bullfrog was very abundant, which is a cause for significant management concern. Species of non-native plants that are of management concern include red brome, bufflegrass, and cheatgrass. For a park unit of its size and geographic location, we found the plant and vertebrate communities to be fairly diverse; for each taxonomic group we found representative species from a wide range of taxonomic orders and/or families. The monument's geographic location, with influences from the Rocky Mountain, Chihuahuan Desert, and Madrean ecological provinces, plays an important role in determining the species richness at the monument. Also important is the wide range of conditions at the site. The diversity of plants results from a wide variety of soil types and aspects (from the cool, moist Cliff Dweller Canyon to dry mesa slopes) and an abundance of water from the West Fork of the Gila River. In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found species that were only associated with a single community type, most often the riparian areas along the West and Middle forks of the Gila River. We found cause for significant concern with regard to loss of species in the last few decades. One species of amphibian (Chiricahua leopard frog) is certainly extirpated from the area. Three other species of amphibians (Mexican spadefoot, Woodhouse's toad, and red-spotted toad), reported as being 'common' in the area in 1971, were not found during our surveys. In addition, we did not find three species of rodents that were found in 1965: silky pocket mouse, Ord's kangaroo rat, and southern grasshopper mouse. The monument's aquatic vertebrate component, in particular, may be at a critical juncture whereby other species, such as gartersnakes, may be poised for extirpation. Declining abundance of native fish species has been demonstrated from long-term monitoring of these communities along the Middle Fork of the Gila River. This report includes lists of species recorded by us or species likely to be recorded with additional survey effort. It also includes management implications from our work - how the monument staff might better maintain or enhance the unique biological resources of the monument. This study is the first step in a long-term process of compiling information on the biological resources of the monument and its surrounding areas. We recommend additional inventory and monitoring studies and identify components of our effort that could be improved upon

Open-File Report↗

USGS2021

Quantifying the representation of plant communities in the protected areas of the U.S.: An analysis based on the U.S. National Vegetation Classification Groups

Plant communities represent the integration of ecological and biological processes and they serve as an important component for the protection of biological diversity. To measure progress towards protection of ecosystems in the United States for various stated conservation targets we need datasets at the appropriate thematic, spatial, and temporal resolution. The recent release of the LANDFIRE Existing Vegetation Data Products (2016 Remap) with a legend based on U.S. National Vegetation Classification allowed us to assess the conservation status of plant communities of the U.S. The map legend is based on the Group level of the USNVC, which characterizes the regional differences in plant communities based on dominant and diagnostic plant species. By combining the Group level map with the Protected Areas Database of the United States (PAD-US Ver 2.1), we quantified the representation of each Group. If the mapped vegetation is assumed to be 100% accurate, using the Aichi Biodiversity target (17% land in protection by 2020) we found that 159 of the 265 natural Groups have less than 17% in GAP Status 1 & 2 lands and 216 of the 265 Groups fail to meet a 30% representation target. Only four of the twenty ecoregions have >17% of their extent in Status 1 & 2 lands. Sixteen ecoregions are dominated by Groups that are under-represented. Most ecoregions have many hectares of natural or ruderal vegetation that could contribute to future conservation efforts and this analysis helps identify specific targets and opportunities for conservation across the U.S.

Forests↗

USGS2020

Probabilistic patterns of inundation and biogeomorphic changes due to sea-level rise along the northeastern U.S. Atlantic coast

Context Coastal landscapes evolve in response to sea-level rise (SLR) through a variety of geologic processes and ecological feedbacks. When the SLR rate surpasses the rate at which these processes build elevation and drive lateral migration, inundation is likely. Objectives To examine the role of land cover diversity and composition in landscape response to SLR across the northeastern United States. Methods Using an existing probabilistic framework, we quantify the probability of inundation, a measure of vulnerability, under different SLR scenarios on the coastal landscape. Resistant areas—wherein a dynamic response is anticipated—are defined as unlikely (p < 0.33) to inundate. Results are assessed regionally for different land cover types and at 26 sites representing varying levels of land cover diversity. Results Modeling results suggest that by the 2050s, 44% of low-lying, habitable land in the region is unlikely to inundate, further declining to 36% by the 2080s. In addition to a decrease in SLR resistance with time, these results show an increasing uncertainty that the coastal landscape will continue to evolve in response to SLR as it has in the past. We also find that resistance to SLR is correlated with land cover composition, wherein sites containing land cover types adaptable to SLR impacts show greater potential to undergo biogeomorphic state shifts rather than inundating with time. Conclusions Our findings support other studies that have highlighted the importance of ecological composition and diversity in stabilizing the physical landscape and suggest that flexible planning strategies, such as adaptive management, are particularly well suited for SLR preparation in diverse coastal settings.

Connecticut, Maine, Maryland, Massachusetts, New H↗

USGS2011

Productivity is a poor predictor of plant species richness

For more than 30 years, the relationship between net primary productivity and species richness has generated intense debate in ecology about the processes regulating local diversity. The original view, which is still widely accepted, holds that the relationship is hump-shaped, with richness first rising and then declining with increasing productivity. Although recent meta-analyses questioned the generality of hump-shaped patterns, these syntheses have been criticized for failing to account for methodological differences among studies. We addressed such concerns by conducting standardized sampling in 48 herbaceous-dominated plant communities on five continents. We found no clear relationship between productivity and fine-scale (meters −2 ) richness within sites, within regions, or across the globe. Ecologists should focus on fresh, mechanistic approaches to understanding the multivariate links between productivity and richness.

Science↗

USGS2016

Preserving prairies: Understanding temporal and spatial patterns of invasive annual bromes in the Northern Great Plains

Two Eurasian invasive annual brome grasses, cheatgrass ( Bromus tectorum ) and Japanese brome ( Bromus japonicus ), are well known for their impact in steppe ecosystems of the western United States where these grasses have altered fire regimes, reduced native plant diversity and abundance, and degraded wildlife habitat. Annual bromes are also abundant in the grasslands of the Northern Great Plains (NGP), but their impact and ecology are not as well studied. It is unclear whether the lessons learned from the steppe will translate to the mixed-grass prairie where native plant species are adapted to frequent fires and grazing. Developing a successful annual brome management strategy for National Park Service units and other NGP grasslands requires better understanding of (1) the impact of annual bromes on grassland condition; (2) the dynamics of these species through space and time; and (3) the relative importance of environmental factors within and outside managers' control for these spatiotemporal dynamics. Here, we use vegetation monitoring data collected from 1998 to 2015 in 295 sites to relate spatiotemporal variability of annual brome grasses to grassland composition, weather, physical environmental characteristics, and ecological processes (grazing and fire). Concern about the impact of these species in NGP grasslands is warranted, as we found a decline in native species richness with increasing annual brome cover. Annual brome cover generally increased over the time of monitoring but also displayed a 3- to 5-yr cycle of reduction and resurgence. Relative cover of annual bromes in the monitored areas was best predicted by park unit, weather, extant plant community, slope grade, soil composition, and fire history. We found no evidence that grazing reduced annual brome cover, but this may be due to the relatively low grazing pressure in our study. By understanding the consequences and patterns of annual brome invasion, we will be better able to preserve and restore these grassland landscapes for future generations.

Ecosphere↗

USGS2022

A haploid pseudo-chromosome genome assembly for a keystone sagebrush species of western North American rangelands

Increased ecological disturbances, species invasions, and climate change are creating severe conservation problems for several plant species that are widespread and foundational. Understanding the genetic diversity of these species and how it relates to adaptation to these stressors are necessary for guiding conservation and restoration efforts. This need is particularly acute for big sagebrush ( Artemisia tridentata ; Asteraceae), which was once the dominant shrub over 1,000,000 km 2 in western North America but has since retracted by half and thus has become the target of one of the largest restoration seeding efforts globally. Here, we present the first reference-quality genome assembly for an ecologically important subspecies of big sagebrush ( A. tridentata subsp. tridentata ) based on short and long reads, as well as chromatin proximity ligation data analyzed using the HiRise pipeline. The final 4.2-Gb assembly consists of 5,492 scaffolds, with nine pseudo-chromosomal scaffolds (nine scaffolds comprising at least 90% of the assembled genome; n = 9). The assembly contains an estimated 43,377 genes based on ab initio gene discovery and transcriptional data analyzed using the MAKER pipeline, with 91.37% of BUSCOs being completely assembled. The final assembly was highly repetitive, with repeat elements comprising 77.99% of the genome, making the Artemisia tridentata subsp. tridentata genome one of the most highly repetitive plant genomes to be sequenced and assembled. This genome assembly advances studies on plant adaptation to drought and heat stress and provides a valuable tool for future genomic research.

Arizona, California, Colorado, Idaho, Montana, Neb↗

USGS2018

Drivers of chaparral plant diversity

Chaparral diversity has marked spatial and temporal variation. Evolutionary diversity at the genetic, specific, and lineage level contribute to a very diverse flora. Ecological diversity is evident in life histories that comprise a range of physiological and morphological strategies for dealing with drought, and demographic patterns centered around different seedling recruitment strategies. Community or alpha diversity varies markedly through time. Mature chaparral ranges from monotypic stands of chamise ( Adenostoma fasciculatum ) to mixed chaparral often with up to a dozen shrub species. The understory contributes relatively little other than a few diminutive annuals and occasional herbaceous perennial resprouts. However, after fire, diversity increases dramatically and is often dominated by annuals that arise from a dormant seedbank with significant contribution of geophytes resprouting and flowering from dormant bulbs and corms. This flora has very diverse life histories, with some present only a year or two and then existing as a dormant seedbank or bulbs until the next fire. Others may persist much longer, often in gaps in the shrub canopy. Postfire dominance-diversity patterns fit a geometric model as most communities are dominated by a few species and the bulk of the flora comprise subordinates that occupy specific microhabitats. Postfire community assembly is a result of competitive interactions and environmental filtering effects. Beta diversity plays a role in community assembly for as heterogeneity of communities in the landscape increases, the potential species pool for a community increases. Gamma diversity is particularly high because species turnover across latitudinal and elevational gradients is high. The role of diversity in conferring community resilience is complex and a function of the life history of shrub dominants and the historical patterns of fires. Under some circumstances low diversity may be more resilient than high diversity, for example under high fire frequency monotypic stands of Adenostoma fasciculatum may resist change better than diverse stands that include obligate seeding shrubs sensitive to short interval fires. Postfire annuals also are sensitive to short interval fires as these disturbances enhance the invasion by more competitive non-native grasses. Expected increases in anthropogenic ignitions due to population growth are the biggest threat to biodiversity in chaparral.

Book chapter↗

USGS2022

Spatially explicit management of genetic diversity using ancestry probability surfaces

1. Ecological restoration and conservation efforts are increasing worldwide and the management of intraspecific genetic variation in plants and animals, an important component of biodiversity, is increasingly valued. As a result, tailorable, spatially explicit approaches to map genetic variation are needed to support decision-making and management frameworks related to the recovery of threatened and endangered species and the maintenance of genetic resources in species utilized by humans, such as for restoration or agricultural purposes. 2. Here, we describe and demonstrate a workflow to spatially interpolate patterns of genetic differentiation using novel functions in the R package POPMAPS ( Pop ulation M anagement using A ncestry P robability S urfaces). Our approach uses empirical genetic data to estimate ancestry coefficients across a user-defined landscape correlated with patterns of differentiation in the focal species. The resulting surface, which we term the ancestry probability surface, includes two components: hard population boundaries and estimations of uncertainty that represent confidence in population assignments (i.e., ancestry probabilities). 3. An ancestry probability surface developed for Hilaria jamesii , an important graminoid utilized in restoration across the western United States, demonstrates the functionality of POPMAPS . Genetic distances among empirical sites correlated better with least-cost distances across suitable habitat than with geographic distances, informing the surface over which the interpolation was conducted (i.e., a model indicating habitat suitability). A jackknifing procedure identified parameter values resulting in robust population assignments across the species’ range, which were utilized in downstream analyses to estimate ancestry coefficients from empirical data. Ancestry coefficients were translated into ancestry probabilities, which tended to be low for cells that were intermediate in distance between empirical sampling locations representing different populations or when influenced by empirical sampling locations with mixed genetic ancestry. 4. POPMAPS allows users to tailor parameter values and analytical approaches and thereby incorporate species-specific biological characteristics and desired levels of uncertainty into maps illustrating patterns of genetic differentiation. Ancestry probability surfaces may be used to guide management or investigate further ecological or evolutionary hypotheses. We discuss how maps produced by POPMAPS can inform multiple management challenges including species recovery planning and the utilization of commonly used species in restoration.

Methods in Ecology and Evolution↗

USGS2019

Long-term nitrogen addition shifts the soil nematode community to bacterivore-dominated and reduces its ecological maturity in a subalpine forest

Nitrogen deposition from anthropogenic sources is a global problem that reaches even the most remote ecosystems. Responses belowground vary by ecosystem, and have feedbacks to geochemical processes, including carbon storage. A long-term nitrogen addition study in a subalpine forest has shown carbon loss over time, atypical for a forest ecosystem. Loss of microbial biomass is likely linked to lower soil carbon, but the mechanism behind this is still unknown. One possible explanation is through increased turnover due to grazing by soil fauna. Because nematodes occupy many trophic levels and are sensitive to trophic and environmental changes, assessing their communities helps reveal belowground responses. In this study, we tested the hypothesis that long-term nitrogen fertilization affects nematode community structure and maturity beneath coniferous forests in the Rocky Mountains, indicating a faster cycling, bacterial-driven system. We identified and enumerated nematodes by trophic group and family from experimental plots. Total nematode abundance was 40–96% greater in fertilized plots compared to the control, but richness, diversity, and ecological maturity were lower. The differences in abundance were driven by opportunistic bacterivores (e.g., Rhabditidae) and plant parasites (e.g., Tylenchidae), which made up 23 and 13% of the community in fertilized compared to 7 and 5% in control plots, respectively. Nematode maturity indices showed that the nematode food webwas enriched (indicating high nutrient/resource status) and structured (all trophic levels present, including long-lived predators) in both treatments, but significantly more enriched in the fertilized treatment. Nonmetric multidimensional scaling of the relative abundance of nematode families demonstrated that nematode community composition differed between treatments, driven largely by opportunistic bacterivores (e.g., Rhabditidae) in the fertilized plots. The mechanism of the aboveground–belowground link between nitrogen deposition and nematode community composition is likely through increased microbial turnover, and sustained high-quality food for microbial grazing nematodes.

Soil Biology and Biochemistry↗

USGS2010

Seeding Method Influences Warm-Season Grass Abundance and Distribution but not Local Diversity in Grassland Restoration

Ecological theory predicts that the arrangement of seedlings in newly restored communities may influence future species diversity and composition. We test the prediction that smaller distances between neighboring seeds in drill seeded grassland plantings would result in lower species diversity, greater weed abundance, and larger conspecific patch sizes than otherwise similar broadcast seeded plantings. A diverse grassland seed mix was either drill seeded, which places seeds in equally spaced rows, or broadcast seeded, which spreads seeds across the ground surface, into 24 plots in each of three sites in 2005. In summer 2007, we measured species abundance in a 1 m2 quadrat in each plot and mapped common species within the quadrat by recording the most abundant species in each of 64 cells. Quadrat-scale diversity and weed abundance were similar between drilled and broadcast plots, suggesting that processes that limited establishment and controlled invasion were not affected by such fine-scale seed distribution. However, native warm-season (C4) grasses were more abundant and occurred in less compact patches in drilled plots. This difference in C4 grass abundance and distribution may result from increased germination or vegetative propagation of C4 grasses in drilled plots. Our findings suggest that local plant density may control fine-scale heterogeneity and species composition in restored grasslands, processes that need to be further investigated to determine whether seed distributions can be manipulated to increase diversity in restored grasslands. ?? 2010 Society for Ecological Restoration International.

Restoration Ecology↗

USGS2025

Photographic guide to the leaf litter arthropod community of the lowland wet forest ecosystem of the Island of Hawaiʻi

Leaf litter arthropods are important components of the food web in forests, and their presence and diversity can provide information on forest health. There has been very little documentation of the leaf litter arthropods in Hawaiian forest ecosystems. This technical report is a photographic guide to some common arthropods collected from forest leaf litter at the Liko Nā Pilina Hybrid Ecosystems Project study site, a lowland wet forest in Hilo, Island of Hawaiʻi, USA. Leaf litter samples were collected from plots of invaded and experimental restoration communities using two complementary methods (litterbags and quadrats), and arthropods were extracted using Berlese funnels. The field site contained many morphospecies that were rare and locally distributed across plots, and only a few that were very common and widely distributed. The majority of the morphospecies identified were mites. This photoguide is designed to help identify arthropods found in plant litter in Hawaiian lowland forests and it may assist with research and education efforts concerned with the diversity, ecology, or conservation of litter arthropods across the Hawaiian archipelago and other Pacific islands.

Hawaii↗

USGS2026

Plant diversity shifts with drying and wetting cycles following removal of poplar plantations in Dongting Lake, China

Dongting Lake, the second largest lake in China, plays a crucial role in maintaining regional ecological security by providing key habitats for waterbirds. This study examined how hydrology and topography (ditches and mounds) together generate fine-scale wet–dry gradients that shape species establishment and successional trajectories. Over the past decade, vegetation restoration has been implemented through the removal of poplar plantations. We selected sites in West Dongting Lake representing different stages following poplar removal, including active plantations (Poplar), one-year (1Yr) and five-year (5Yr) restored sites, and natural floodplain reference sites. Analyses of seasonal water-level dynamics over several years revealed distinct hydrological regimes among restoration stages, with differences in inundation duration and amplitude corresponding to ditch–mound topography. Species diversity indicators showed that species richness was highest in Poplar (37 species) and lowest in Reference sites (14 species), with exotic species richness following the same trend. The lowest Cody index occurred between 1Yr and Reference sites, while the Jaccard similarity differed significantly among site pairs, with lower similarity observed in comparisons with the Reference site. Non-metric Multidimensional Scaling (NMDS) analysis indicated minimal overlap between Poplar and Reference sites, with 1Yr and 5Yr sites clustering together but remaining distinct from the Reference site. These results suggest that poplar cultivation and its associated mound-ditch topography have altered hydrological and community structure of the wetland, facilitating the persistence of exotic species. Natural recolonization is driven by the interaction between seasonal water-level dynamics and topography, which regulate inundation duration and wet–dry cycles. Effective restoration may require removal of poplar plantations and regrading of artificial ditches and mounds to restore natural hydrological connectivity to support vegetation recovery in these subtropical monsoonal wetlands.

Dongting Lake↗

USGS2015

Effects of topoclimatic complexity on the composition of woody plant communities

Topography can create substantial environmental variation at fine spatial scales. Shaped by slope, aspect, hill-position and elevation, topoclimate heterogeneity may increase ecological diversity, and act as a spatial buffer for vegetation responding to climate change. Strong links have been observed between climate heterogeneity and species diversity at broader scales, but the importance of topoclimate for woody vegetation across small spatial extents merits closer examination. We established woody vegetation monitoring plots in mixed evergreen-deciduous woodlands that spanned topoclimate gradients of a topographically heterogeneous landscape in northern California. We investigated the association between the structure of adult and regenerating size classes of woody vegetation and multidimensional topoclimate at a fine scale. We found a significant effect of topoclimate on both single-species distributions and community composition. Effects of topoclimate were evident in the regenerating size class for all dominant species (four Quercus spp. , Umbellularia californica and Pseudotsuga menziesii ) but only in two dominant species ( Quercus agrifolia and Quercus garryana ) for the adult size class. Adult abundance was correlated with water balance parameters (e.g. climatic water deficit) and recruit abundance was correlated with an interaction between the topoclimate parameters and conspecific adult abundance (likely reflecting local seed dispersal). However, in all cases, the topoclimate signal was weak. The magnitude of environmental variation across our study site may be small relative to the tolerance of long-lived woody species. Dispersal limitations, management practices and patchy disturbance regimes also may interact with topoclimate, weakening its influence on woody vegetation distributions. Our study supports the biological relevance of multidimensional topoclimate for mixed woodland communities, but highlights that this relationship might be mediated by interacting factors at local scales.

California↗

USGS2019

Landscape controls on the distribution and ecohydrology of central Oregon springs

Small springs in semiarid landscapes are essential for maintaining aquatic biodiversity and supporting livestock grazing operations. However, little is known about controls on the distribution and physical characteristics of small springs, the aquatic species they support, or their sensitivity to disturbance. We address this information gap in the Crooked River subbasin, a tributary of the Deschutes River in Oregon. We conducted spatial analyses on 2,519 mapped springs to investigate the influence of landscape controls (precipitation and bedrock permeability) on spring density in the Crooked River subbasin and the adjacent Upper Deschutes subbasin. Spring density was highest in areas of low bedrock permeability ( P < 0.0001) and high annual precipitation ( P < 0.0001). We suggest that the high density of small springs on low‐permeability bedrock indicates that these springs generally have short, shallow flow paths and thus may be susceptible to forecasted climate changes. A survey of 137 springs in the Crooked River subbasin revealed the hydrogeologic setting affects spring discharge type ( P = 0.017), temperature ( P = 0.011), and pH ( P = 0.026). We found a high frequency of anthropogenic impacts on springs: 95% of diffuse‐discharge springs and 79% of discrete‐discharge springs were disturbed by livestock grazing. Species inventories at 10 of the most intact surveyed springs confirm that small springs are biologically diverse, with 151 total species of plants and 135 total taxa of macroinvertebrates. Springs in the Crooked River subbasin are ecologically important habitats but require careful management to protect against livestock disturbance and development.

Oregon↗

USGS2016

Mediterranean biomes: Evolution of their vegetation, floras and climate

Mediterranean-type ecosystems (MTEs) possess the highest levels of plant species richness in the world outside of the wet tropics. Sclerophyll vegetation similar to today’s mediterranean-type shrublands was already present on oligotrophic soils in the wet and humid climate of the Cretaceous, with fire-adapted Paleogene lineages in southwestern Australia and the Cape Region. The novel MTC seasonality present since the mid-Miocene has allowed colonization of MTEs from a regional species pool with associated diversification. Fire persistence has been a primary driving factor for speciation in four of the five regions. Understanding the regional patterns of plant species diversity among the MTEs involves complex interactions of geologic and climatic histories for each region as well as ecological factors that have promoted diversification in the Neogene and Quaternary. A critical element of species richness for many MTE lineages has been their ability to speciate and persist at fine spatial scales, with low rates of extinction.

Annual Review of Ecology, Evolution, and Systemati↗

USGS1996

South Florida wetlands ecosystem; biogeochemical processes in peat

The South Florida wetlands ecosystem is an environment of great size and ecological diversity (figs. 1 and 2). The landscape diversity and subtropical setting of this ecosystem provide a habitat for an abundance of plants and wildlife, some of which are unique to South Florida. South Florida wetlands are currently in crisis, however, due to the combined effects of agriculture, urbanization, and nearly 100 years of water management. Serious problems facing this ecosystem include (1) phosphorus contamination producing nutrient enrichment, which is causing changes in the native vegetation, (2) methylmercury contamination of fish and other wildlife, which poses a potential threat to human health, (3) changes in the natural flow of water in the region, resulting in more frequent drying of wetlands, loss of organic soils, and a reduction in freshwater flow to Florida Bay, (4) hypersalinity, massive algal blooms, and seagrass loss in parts of Florida Bay, and (5) a decrease in wildlife populations, especially those of wading birds. This U.S. Geological Survey (USGS) project focuses on the role of organic-rich sediments (peat) of South Florida wetlands in regulating the concentrations and impact of important chemical species in the environment. The cycling of carbon, nitrogen, phosphorus, and sulfur in peat is an important factor in the regulation of water quality in the South Florida wetlands ecosystem. These elements are central to many of the contamination issues facing South Florida wetlands, such as nutrient enrichment, mercury toxicity, and loss of peat. Many important chemical and biological reactions occur in peat and control the fate of chemical species in wetlands. Wetland scientists often refer to these reactions as biogeochemical processes, because they are chemical reactions usually mediated by microorganisms in a geological environment. An understanding of the biogeochemical processes in peat of South Florida wetlands will provide a basis for evaluating the effects on water quality of (1) constructing buffer wetlands to alleviate nutrient contamination and (2) replumbing the ecosystem to restore natural water flow. The results may also suggest new approaches for solving problems of contamination and water quality in these wetlands. A second focus of this project will be on the geochemical history of the South Florida ecosystem. Peat is a repository of the history of past environmental conditions in the wetland. Before effective action can be taken to correct many of the problems facing these wetlands, we must first study the biogeochemistry of the peat at depth in order to understand whether current problems are the result of recent human activity or are part of a long-term natural cycle. Coordination with other (USGS) projects for South Florida is ongoing. These projects are studying the biological history of the ecosystem by using pollen and shells buried in the peat, together with procedures for dating the peat at various depths, to develop an overall ecosystem history model, with emphasis on the last 100 years.

Fact Sheet↗

USGS2006

Ecological consequences of hydropower development in Central America: Impacts of small dams and water diversion on neotropical stream fish assemblages

Small dams for hydropower have caused widespread alteration of Central American rivers, yet much of recent development has gone undocumented by scientists and conservationists. We examined the ecological effects of a small hydropower plant (Dona Julia Hydroelectric Center) on two low-order streams (the Puerto Viejo River and Quebradon stream) draining a mountainous area of Costa Rica. Operation of the Dona Julia plant has dewatered these streams, reducing discharge to ~ 10% of average annual flow. This study compared fish assemblage composition and aquatic habitat upstream and downstream of diversion dams on two streams and along a ~ 4 km dewatered reach of the Puerto Viejo River in an attempt to evaluate current instream flow recommendations for regulated Costa Rican streams. Our results indicated that fish assemblages directly upstream and downstream of the dam on the third order Puerto Viejo River were dissimilar, suggesting that the small dam (< 15 in high) hindered movement of fishes. Along the ~ 4 km dewatered reach of the Puerto Viejo River, species count increased with downstream distance from the dam. However, estimated species richness and overall fish abundance were not significantly correlated with downstream distance from the dam. Our results suggested that effects of stream dewatering may be most pronounced for a subset of species with more complex reproductive requirements, classified as equilibrium-type species based on their life-history. In the absence of changes to current operations, we expect that fish assemblages in the Puerto Viejo River will be increasingly dominated by opportunistic-type, colonizing fish species. Operations of many other small hydropower plants in Costa Rica and other parts of Central America mirror those of Doha Julia; the methods and results of this study may be applicable to some of those projects.

River Research and Applications↗