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Investigating white-nose syndrome in bats

A devastating, emergent disease afflicting hibernating bats has pread from the northeast to the mid-Atlantic region of the United States at an alarming rate. Since the winter of 2006-2007, hundreds of thousands of insect-eating bats from at least nine states have died from this new disease, named White-Nose Syndrome (WNS). The disease is named for the white fungus often seen on the muzzles, ears, and wings of bats. This disease poses a threat to cave hibernating bats of the United States and potentially all temperate regions of the world. USGS scientists from the National Wildlife Health Center (NWHC) and the Fort Collins Science Center (FORT), in collaboration with the New York State Department of Environmental Conservation, the U.S. Fish and Wildlife Service, and others have linked a newly described, cold-loving fungus to WNS.

Fact Sheet

A national plan for assisting states, federal agencies, and tribes in managing white-nose syndrome in bats

White-nose syndrome (WNS) is a disease responsible for unprecedented mortality in hibernating bats in the northeastern U.S. This previously unrecognized disease has spread very rapidly since its discovery in January 2007, and poses a considerable threat to hibernating bats throughout North America. As WNS spreads, the challenges for understanding and managing the disease continue to increase. Given the escalating complexity of these challenges, a highly coordinated effort is required for State, Federal, and Tribal wildlife agencies, and private partners to respond effectively to WNS and conserve species of bats. The plan proposed herein details the elements that are critical to the investigation and management of WNS, identifies key action items to address stated goals, and outlines the role(s) of agencies and entities involved in this continental effort.

Report

Hydrogeology of unconsolidated and bedrock aquifers along the Salmon River, including Malone, Franklin County, New York

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, investigated the hydrogeology of the unconsolidated and bedrock aquifers along the Salmon River corridor in northern Franklin County, New York. The study area covers roughly 147 square miles and includes the village of Malone and parts of the Towns of Malone, Bellmont, Burke, Constable, Westville, Bangor, Duane, and Franklin, New York. Groundwater is the primary source for water supply within the study area. Eighty-three percent of all residents use public water supplied from two production wells that draw water from a thick, highly productive sand-and-gravel aquifer likely receiving induced infiltration from the Salmon River. Twenty-four percent of the 187 verified domestic wells in the study area outside of the production well service area boundary are screened in typically discontinuous deposits of stratified sand and sand and gravel. Seventy-six percent of the wells are completed in bedrock aquifers including the Potsdam Sandstone, metamorphic rocks, Theresa Formation, and unknown bedrock. Characterizing and understanding potential groundwater resources is critical for protecting the quality of the groundwater. The information in this report may be used to guide delineation of groundwater contributing areas, assess potential threats to aquifers from both point and nonpoint sources, respond to contamination from spills or leaks from underground storage facilities or other sources, and to support assessments for future development of municipal water supplies.

New York

A structured decision-making framework for managing cyanobacterial harmful algal blooms in New York State parks

Cyanobacteria are increasingly a global water-quality concern because of the potential for these organisms to develop into potentially harmful blooms that affect ecological, economic, and public health. Cyanobacterial harmful algal blooms (CyanoHABs) can lead to a decrease in water quality and affect many of the recreational and ecological benefits of parks that include lakes. The New York State Office of Parks, Recreation and Historic Preservation (OPRHP) is a State agency within the New York State Executive Department charged with the operation of State parks and historic sites. Many New York State parks include lakes or other freshwater bodies, which can be susceptible to CyanoHABs. The OPRHP faces difficult decisions regarding prevention of and response to CyanoHABs. The U.S. Geological Survey partnered with the OPRHP and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing CyanoHABs in OPRHP parks. Two parks, Moreau Lake State Park and Rockland Lake State Park, served as case studies to motivate and test the template. This report describes how the principles of structured decision making can be used to navigate the challenges associated with managing CyanoHABs in OPRHP parks. Management objectives and strategies for CyanoHABs in parks are described, strategies to evaluate consequences and manage tradeoffs are discussed, and potential challenges to the implementation of preferred alternatives are considered. General guidance is provided so the OPRHP can undertake the structured decision-making process for CyanoHABs in any of its parks. In addition, this report represents the first effort to create a strategy for applying decision analysis tools to the complex natural resource challenge of CyanoHAB mitigation and management. The case studies and template are intended to serve as an example that natural resource managers faced with CyanoHABs challenges can use to inform their decision-making processes.

New York

Hydrogeology of the Lloyd aquifer on Long Island, New York— A brief summary of USGS investigations

The four counties of Long Island (fig. 1) are underlain by a wedge-shaped sequence of unconsolidated deposits of Late Cretaceous and Pleistocene age that lie unconformably on crystalline bedrock (fig. 2). A saprolitic (weathered bedrock) zone 20 to 100 ft thick overlies the bedrock in most areas. The sequence of unconsolidated deposits thickens to the south and southeast by about 65 to 100 feet per mile and contains Long Island's fresh ground water. Long Island's ground-water system consists of four main aquifers-the upper glacial, the Jameco, the Magothy, and the Lloyd. The Lloyd aquifer underlies nearly all of Long Island (fig. 3), but pumpage from the Lloyd has been limited to the northern and southern coastal areas of the island by the New York State Department of Environmental Conservation since about 1955 (Garber, 1986). Coastal areas are exempt where the Lloyd is the only source of potable water. The former Jamaica Water Supply Corporation (now owned by New York City) is a noted exception withdrawing as much as 6 million gallons per day (Mgal/d) since the mid-1930s from the Lloyd in central Queens County. This paper: (1) provides a brief history of U.S. Geological Survey (USGS) studies that provided significant data on the Lloyd, (2) summarizes the hydraulic characteristics of the Lloyd as reported in those studies, and (3) describes present-day monitoring of the Lloyd by the USGS.

New York

Investigation of fish communities in natural channel sections of the Mohawk River, New York

Little is known about the natural resources in the natural channel sections of the Mohawk River between Rome and Frankfort, New York, where the river channel runs separately from and parallel to the Erie Canal. This river section runs through multiple locations that are listed as active remediation sites under New York’s Inactive Hazardous Waste Disposal Site Program and has negligible public or commercial access. As a result, there is minimal recreational usage of this river section, and efforts to conduct biological sampling have been limited. To better understand the composition of fish communities and contaminant concentrations in the natural channel of the Mohawk River, the U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, sampled resident fish in the 34-kilometer section from the mouth of Oriskany Creek downstream to Frankfort. Fish communities were sampled using boat electrofishing during 2021, 2023, and 2024 across multiple reaches within this section. These data were used to estimate species richness (number of species), relative abundance and biomass (catch rates), population size structure (distribution of lengths), and fish condition (a proxy for health). Some gamefish specimens were also analyzed to determine contaminant concentrations in fish tissue. A total of 1,531 individual fish and 38 fish species were captured across all surveys. Seventeen of the 38 (45 percent) species were classified as native to the Mohawk River watershed, whereas 21 of the 38 (55 percent) species were classified as nonnative. Some popular gamefish species such as largemouth bass ( Micropterus salmoides ) and smallmouth bass ( Micropterus dolomieu ) were abundant in most reaches, whereas others such as walleye ( Sander vitreus ) and northern pike ( Esox lucius ) were found sporadically. Only one round goby ( Neogobius melanostomus ) was captured, indicating that this high-profile invasive species remains uncommon in this habitat. A backwater reach had the greatest relative abundance and condition of many species. This indicates connected lentic habitats such as oxbows and backwaters may be important nursery and refuge areas in the aquatic ecosystem. Polychlorinated biphenyl (PCB) concentrations in fish tissue were highly elevated relative to the New York State Department of Health (NYSDOH) fish consumption “don’t eat” advisory guideline. Some specimens exceeded the guideline by an order of magnitude or more, particularly those from a localized area downstream from the Utica Harbor Dam. Concentrations of perfluorooctanesulfonic acid (PFOS) often approached the NYSDOH “don’t eat” consumption guideline but only one sample exceeded the guideline. Concentrations of other contaminants such as mercury and pesticides were consistently measured at less than the “don’t eat” consumption guidelines. These data indicate PCBs remain the primary contaminant of concern in the natural channel of the Mohawk River and are readily bioaccumulating in aquatic organisms despite prior remediation measures. Taken together, the findings in this report are intended to inform future decisions related to fisheries management, public access, recreational usage, and fish consumption advisories.

New York

Groundwater-level analysis of selected wells in the Hoosic River Valley near Hoosick Falls, New York, for aquifer framework and properties

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, analyzed groundwater levels, drilling record logs, and field water-quality data from selected wells, and the surficial geology in the Hoosic River valley south of the village of Hoosick Falls, New York, to provide information about the framework and properties of a confined aquifer. The aquifer, which consists of ice-contact sand and gravel overlain by lacustrine clay and silt, was evaluated by the New York State Department of Environmental Conservation as part of their investigation of alternate water supplies for the village whose wellfield has been affected by perfluorooctanoic acid. Wells inventoried in the study area were classified as confined, water table, or transitional between the two aquifer conditions. Groundwater levels in three confined-aquifer wells and a transitional-aquifer well responded to pumping of a test production well finished in the confined aquifer. Groundwater levels in a water-table well showed no detectable water-level change in response to test-well pumping. Analysis of drawdown and recovery data from the three confined-aquifer wells and a transitional-aquifer well through the application of the Theis type-curve method provided estimates of aquifer properties. Representation of a constant-head boundary in the analysis where an unnamed pond and fluvial-terrace deposits abut the valley wall resulted in satisfactory matches of the Theis type curves with the observed water-level responses. Aquifer transmissivity estimates ranged from 1,160 to 1,370 feet squared per day. Aquifer storativity estimates ranged from 5.2×10 –5 to 1.1×10 –3 and were consistent with the inferred degree of confinement and distance from the represented recharge boundary.

New York

Spatiotemporal variations in estrogenicity, hormones, and endocrine-disrupting compounds in influents and effluents of selected wastewater-treatment plants and receiving streams in New York, 2008-09

Endocrine-disrupting compounds (EDCs) in wastewater effluents have been linked to changes in sex ratios, intersex (in males), behavioral modifications, and developmental abnormalities in aquatic organisms. Yet efforts to identify and regulate specific EDCs in complex mixtures are problematic because little is known about the estrogen activity (estrogenicity) levels of many common and emerging contaminants. The potential effects of EDCs on the water quality and health of biota in streams of the New York City water supply is especially worrisome because more than 150 wastewater-treatment plants (WWTPs) are permitted to discharge effluents into surface waters and groundwaters of watersheds that provide potable water to more than 9 million people. In 2008, the U.S. Geological Survey (USGS), the New York State Department of Environmental Conservation (NYSDEC), New York State Department of Health (NYSDOH), and New York City Department of Environmental Protection (NYCDEP) began a pilot study to increase the understanding of estrogenicity and EDCs in effluents and receiving streams mainly in southeastern New York. The primary goals of this study were to document and assess the spatial and temporal variability of estrogenicity levels; the effectiveness of various treatment-plant types to remove estrogenicity; the concentrations of hormones, EDCs, and pharmaceuticals, personal care products (PPCPs); and the relations between estrogenicity and concentrations of hormones, EDCs, and PPCPs. The levels of estrogenicity and selected hormones, non-hormone EDCs, and PPCPs were characterized in samples collected seasonally in effluents from 7 WWTPs, once or twice in effluents from 34 WWTPs, and once in influents to 6 WWTPs. Estrogenicity was quantified, as estradiol equivalents, using both the biological e-screen assay and a chemical model. Results generally show that (1) estrogenicity levels in effluents varied spatially and seasonally, (2) a wide range of known and unknown EDCs were present in both WWTP effluents and receiving streams, (3) some effluents may be important sources of estrogenicity in weakly diluted streams, (4) measured levels of biological estrogenicity were often higher than estimated levels of chemical estrogenicity, and (5) the type of treatment had a large effect on the removal efficacy, and consequently, the estrogenicity levels observed in treated effluents.

New York

Using microbial source tracking to identify fecal contamination sources in Great South Bay on Long Island, New York

The U.S. Geological Survey worked in cooperation with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering a part of Great South Bay (referred to as Great South Bay for the purposes of this report) near the hamlets of West Sayville, Sayville, and Bayport on the southern shore of Suffolk County on Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the bay and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Analysis revealed that the most substantial source of fecal contamination to Great South Bay was discharge from sites draining ponds and wetlands into the tributaries sampled, Brown and Green Creeks, particularly during the summer months. Fecal coliform bacteria at sites where ponds and wetlands drain are increased by stormwater runoff, which is another substantial source of fecal contamination. Sites with high concentrations of fecal coliform bacteria in the summer exacerbated by stormwater include the Brown Creek Culvert at Middle Road, Mill Pond Culvert near South Street, and Green Creek Culvert near Montauk Highway sites. The canine Bacteroides (BacCan) marker was the most frequently detected microbial source tracking marker with 15 positive detections in surface water across the landscape, followed by the waterfowl Helicobacter (GFD) marker with 9 detections and the human Bacteroides (HF183) marker with 4 detections in surface water (excluding 2 detections in sediment). The ruminant Bacteroides (Rum2Bac) marker was not detected in any samples collected during this study. The detection frequency of BacCan was similar for all sampling conditions and seasons, suggesting canine influence is unrelated to weather events and is a year-round occurrence. BacCan was detected in 14 of 16 source samples and only 1 of 16 receptor samples, which suggests that canine fecal contamination is likely diluted in the bay. There was a similar amount of marker detections when comparing weather condition (wet or dry) and season (winter or summer), suggesting that fecal contamination was unrelated to weather events or time of year. Eight waterfowl marker detections were in samples collected during the winter, and only one during the summer, implicating seasonal avian fecal contamination throughout the embayment. The human marker was detected in only one surface-water receptor sample, during the wet winter sampling event at the Green Creek Mid-Bay site. Three of four human marker detections were in the samples collected during the wet winter sampling event, indicating that weather and season may influence the presence of human markers in Great South Bay, but human markers are not overly prevalent.

New York

Time-domain electromagnetic soundings and passive-seismic measurements for delineation of saline groundwater in the Genesee Valley-fill aquifer system, western New York, 2016–17

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, used noninvasive surface geophysics in the investigation of the distribution of saline groundwater in the valley-fill aquifer system of the Genesee River Valley near the former Retsof salt mine in western New York. In 1994, the Retsof salt mine, the largest of its kind in the western hemisphere, underwent a catastrophic roof collapse that resulted in groundwater inflow from the valley-fill aquifer system and bedrock fracture zones into the mine through two bedrock-rubble chimneys and the subsequent dissolution and filling of the mine with saturated brine. Since the early 2000s, except for a period of remedial pumping in 2006 to 2013, high-salinity water has migrated upward through the rubble chimneys into the basal part the aquifer system. The extent of saline-water migration within the aquifer system had not been evaluated since the end of remedial pumping when all the monitoring wells were grouted shut and abandoned. Installation of a monitoring-well network would be expensive and difficult given the thickness and heterogeneous character of valley fill. An investigation of the current extent of saline water in the aquifer system was warranted because the basal part of the aquifer is shallow to the north and it is used for water supply. In fall 2016 and fall 2017, the U.S. Geological Survey collected time-domain electromagnetic soundings at 105 sites along 13 cross-valley transects north and south of the mine-collapse area, east of Piffard, and on the Fowlerville Moraine. The time-domain electromagnetic soundings were colocated with passive-seismic measurements to estimate the bedrock-surface elevation through use of a regression equation developed from measurements at well sites with reported bedrock depths in the study area. An integrated analysis of the time-domain electromagnetic soundings with the depth-to-bedrock estimates, well logs, and past chloride-monitoring data suggests the presence of a zone of high electrical conductivity associated with saline water in the confined lower part of the valley-fill aquifer system. This high-salinity zone delineated in the lower confined aquifer extends from the mine-collapse area northward for more than 2.5 miles (4.0 kilometers). The chloride concentration in groundwater within this high-conductivity zone may be about 20,000 milligrams per liter. Saline water flowing upward through the bedrock-rubble chimneys and mixing with northward groundwater flow in the lower confined aquifer likely is a major source of chlorides for this high-conductivity zone. The northern extent of the zone is unclear because of the presence of highly saline water zones that were delineated by time-domain electromagnetic soundings in the lower confined aquifer and uppermost bedrock and are probably associated with historic salt-solution wells in Piffard or possibly sourced from natural brine pools.

New York

Evaluation of passive samplers for cyanotoxin detection by immunoassay and chromatographic-mass spectrometry

Harmful algal blooms, particularly cyanobacterial harmful algal blooms, threaten aquatic ecosystems, drinking water supplies, and recreational resources. In 2019, the U.S. Geological Survey, in collaboration with the New York State Department of Environmental Conservation, deployed solid phase adsorption toxin tracking (SPATT) samplers in Seneca Lake, Owasco Lake, and Skaneateles Lake to monitor the cyanotoxins microcystins, cylindrospermopsins, anatoxins, and saxitoxins. SPATT samplers can passively adsorb dissolved cyanotoxins over time, providing time-integrated data capable of detecting low concentrations of cyanotoxins that traditional discrete sampling may miss. SPATT samples were analyzed using enzyme-linked immunosorbent assay (ELISA), liquid chromatography with mass spectrometry (LC–MS), and with tandem mass spectrometry (LC–MS/MS). The effects of ELISA-required preservative on measurements by mass spectrometry methods were also evaluated. SPATT samplers consistently detected microcystins and anatoxins more frequently than concurrent discrete sampling. ELISA results often showed higher cyanotoxin concentrations than LC–MS/MS, likely due to interference from dissolved organic matter and the ability of ELISA to detect a broader range of congeners. The addition of preservative influenced results for some analytes, particularly microcystins, which showed higher concentrations in preserved samples. Limitations in ELISA methods for cylindrospermopsins and saxitoxins were identified, potentially related to cross-reactivity, low sensitivity, or other matrix interferences. This study demonstrates the utility of SPATT samplers in capturing cyanotoxin variability, especially in environments with low cyanotoxin levels or ephemeral blooms. Further research could help improve the reliability of ELISA and other analytical methods in freshwater ecosystems.

New York

Methods of data collection and analysis for an assessment of karst aquifer systems between Albany and Buffalo, New York

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, catalogued aquifers and closed depressions in a karst-prone area between Albany and Buffalo, New York to provide resource managers information to more efficiently manage and protect groundwater resources. The New York State Department of Environmental Conservation has been working with the agricultural industry to raise awareness of karst aquifer contamination susceptibility and how to reduce effects on surface water and groundwater resources, especially in karst areas. There is also a need to make industries, State and local regulators, planners, and the public aware of New York’s karst resources to properly protect and manage these resources and the quality of surface water and groundwater that flows through the karst aquifer. Publicly available geospatial data were identified, collated, and analyzed for a region of karst terrain extending from Albany to Buffalo. The region was divided into 10 subareas. A series of geospatial datasets were assembled to determine the location and extent of karstic rock; bedrock geology and depth to bedrock; average water-table configuration; surficial geology; soil type, thickness, and hydraulic conductivity; land cover; and closed depressions in the land surface. Repeated glaciation and recession across New York have left the landscape pockmarked with closed depressions, which may or may not be related to the underlying bedrock. Closed depressions in areas where carbonate or evaporite karst are present are of primary concern to this study because of the increased potential of karst aquifer contamination from focused recharge. Closed depressions present in areas not associated with karst bedrock can also be evaluated to better understand their ability to transmit surface water to the groundwater system. Information on closed depressions can be used to develop land-management plans to protect local and regional water resources.

New York

Low-flow statistics for selected streams in New York, excluding Long Island

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, updated low-streamflow statistics for New York, excluding Long Island and including hydrologically connected watersheds in bordering States, for the first time since 1972. Historical daily streamflow data for active and inactive gages were considered for this study with periods of record as recent as March 31, 2022, adding 50 years of data to the last published low-streamflow statistics report for New York and including 119 new gages where low-streamflow statistics are calculated for the first time. Gages were evaluated across several criteria to identify gages that were not suitable for low-streamflow frequency analysis. In addition, gages were evaluated for the presence of alteration within the streamflow period of record based on previous studies and U.S. Geological Survey National Water Information System site metadata including peak flow codes. A trend analysis was performed using the Wilcoxon rank-sum hypothesis test comparing data from the most recent 30 years of record to data from 30 years and earlier for each long-record gage (30 years or more of available data). Results from the trend analysis indicated that 45 unaltered and 32 altered long-record sites had a statistically significant trend for the annual minimum n -day time series; most gages showed increasing trends in the annual minimum n -day time series. Low-streamflow statistics were calculated using the most recent 30 years of record for gages with a statistically significant trend. Before and after 1972, the lowest annual 7-day and 30-day average streamflow that occurs (on average) once every 10 years (7Q10 and 30Q10 statistics respectively) increased significantly at 41 unaltered gages and decreased significantly at 3 unaltered gages where data were available.

New York

Using microbial source tracking to identify fecal contamination sources in an embayment in Hempstead Harbor on Long Island, New York

The U.S. Geological Survey worked collaboratively with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering Hempstead Harbor, an embayment on the northern shore of Nassau County, Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the harbor and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, surrounding land use, and additional water-quality data (including nutrient and stable isotopes of nitrate analyses) for the location where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Our analysis revealed an abundance of human and canine fecal contamination throughout the Hempstead Harbor landscape and that water from municipal separate storm sewer system conveyances was the most likely transport mechanism of this fecal contamination. Resuspension of bed sediment may contribute to fecal contamination in the harbor, but more targeted analyses are needed to support this finding. There was little evidence of groundwater-contributing fecal bacteria by direct discharge from the subsurface. A classification scheme was developed to convey the degree of fecal contamination to stakeholders and resource managers. Based on this classification scheme, the culvert at Glenwood Road and the outfall and the spillway at Skillman Street were identified as locations that contribute substantial fecal contamination to Hempstead Harbor.

New York

Monitoring and simulation of hydrology, suspended sediment, and nutrients in selected tributary watersheds of Lake Erie, New York

The U.S. Geological Survey, in cooperation with Erie County, New York, the New York State Department of Environmental Conservation, and the Great Lakes Restoration Initiative, collected water-quality samples in nine selected New York tributaries to Lake Erie, computed estimates of suspended sediment and nutrient loads using the R scripting package rloadest and used the Soil and Water Assessment Tool (SWAT) to simulate hydrology and suspended sediment and nutrient loads from these tributaries. This project was undertaken to better understand the water quality of New York’s inputs into eastern Lake Erie. Water-quality samples for suspended sediment, nitrogen, and phosphorus were collected at 19 sampling sites in the Lake Erie Basin in New York. Daily and monthly suspended sediment and nutrient loads were computed with regressions of streamflow and suspended sediment and nutrient concentrations using rloadest. SWAT models of nine watersheds were created using publicly available data; and the loads calculated by rloadest. Twenty-six SWAT model scenarios were created to explore the effects that best management practices (BMPs; 21 scenarios), point source discharges (4 scenarios), and green infrastructure (1 scenario) can have on the water quality of the nine tributaries to Lake Erie. BMP scenarios for the watershed models included combinations of agricultural BMPs applied at varying implementation levels across the study watersheds, including cover crops, reduced tillage, nutrient management plans, and filter strips. The BMP scenarios showed small reductions of total nitrogen and total phosphorus. The scenarios have variable suspended sediment load results, with both increases and decreases of sediment modeled. The point source scenarios result in lower total phosphorus loads. The green infrastructure scenario shows only minimal reduction of suspended sediment and nutrient loads from the Buffalo River watershed but shows substantial reductions locally.

New York

Survey of fish communities in tributaries to the Mohawk River, New York, 2019

Fish communities of the Mohawk River and associated sections of the New York State Canal System have been well documented but little information is available regarding the status of fish communities in the extensive network of tributaries that feed the Mohawk River. This lack of information is problematic because changes in species distributions or general ecosystem health may go unnoticed in the absence of baseline data. The need for baseline information has been made particularly urgent by the recent establishment of a high-profile invasive fish species in the mainstem of the Mohawk River, the round goby ( Neogobius melanostomus ). Round goby can adversely affect aquatic ecosystems in numerous ways and are able to colonize streams in addition to large rivers and lakes. This potential threat to the aquatic ecosystem, therefore, has created an urgent need to quantify the distribution and abundance of fish species inhabiting tributaries to the Mohawk River before round goby can begin colonizing these habitats. In response, the U.S. Geological Survey and the Mohawk River Basin Program of the New York State Department of Environmental Conservation initiated a study in 2019 to collect quantitative information on fish communities and stream habitats in tributaries to the Mohawk River that could be used in the future to determine the effects of round goby on local fish assemblages and identify substrate and other habitat characteristics that facilitate or inhibit colonization by round goby. Fish communities were surveyed at 20 sites on tributaries to the Mohawk River during summer 2019, using three-pass depletion backpack electrofishing surveys. The resulting data were used to produce quantitative estimates of fish population density and biomass for all species at each site. A total of 11,794 individual fish and 37 species were captured during the 20 surveys. Longnose dace ( Rhinichthys cataractae ), white sucker ( Catostomus commersonii ), blacknose dace ( Rhinichthys atratulus ), fantail darter ( Etheostoma flabellare ), and creek chub ( Semotilus atromaculatus ) were the most frequently encountered species, occurring at 18, 18, 17, 17, and 16 of the 20 sites, respectively. Six darter species, small bottom-dwelling fish that are highly vulnerable to displacement by round goby, were captured during the surveys, and at least one darter species was captured at all but one of the sites. Round goby were only captured at one site, Ninemile Creek near Rome, New York, where they occurred at a low density. Overall, the results indicated that round goby had not extensively colonized tributaries to the Mohawk River as of 2019, and the suite of data collected in this project should serve as a valuable baseline for future assessments of the effects of round goby and other stressors on aquatic ecosystems.

New York

Analysis of factors affecting plume remediation in a sole-source aquifer system, southeastern Nassau County, New York

Several plumes of dissolved, chlorinated solvents, including trichloroethylene, have been identified in a sole-source aquifer near the former Northrop Grumman Bethpage Facility and Naval Weapons Industrial Reserve Plant sites in southeastern Nassau County, New York. Past investigations have documented that the groundwater contamination originated from this industrial area and now extends to the south, in the direction of groundwater flow. The intermixed plumes are commonly referred to as the “Navy Grumman groundwater plume.” Detailed groundwater-flow modeling was needed for the New York State Department of Environmental Conservation (NYSDEC) to evaluate design options necessary for the construction, operation, optimization, maintenance, and monitoring of a groundwater extraction and treatment cleanup plan selected in a December 2019 Amended Record of Decision by the NYSDEC to comprehensively address these plumes. Consequently, the NYSDEC began a cooperative study with the U.S. Geological Survey in 2020 to better understand the local hydrogeologic framework using two independent approaches to characterize aquifer heterogeneity and update an existing regional groundwater-flow model to provide transient boundary conditions for new inset groundwater-flow models of the plume area. We developed these detailed inset models for the two independent aquifer characterizations using history-matching techniques coupled with a novel approach to risk-based management optimization of the remedial design. We also used the updated regional model to assess this optimized groundwater extraction and treatment design for potential saltwater intrusion. The ensembles of parameters resulting from history matching provided a platform with which to evaluate capture by water-supply and remedial wells using particle-tracking techniques. Using the ensemble to select a risk stance, we performed multiobjective optimization to identify various configurations of remedial pumping that are consistent with external constraints and that favor potentially competing objectives. Multiple solutions provide tradeoffs that NYSDEC can consider. In general, pumping redistribution may help to prevent further contamination migration downgradient. These and other study results are intended to support decisions for the remedial design focused on the local area encompassing the full extent of the Navy Grumman groundwater plume.

New York

Spatiotemporal variability of algal biomass and nitrate in Owasco and Seneca Lakes in the Finger Lakes Region, New York, in 2019

Cyanobacterial harmful algal blooms (CyanoHABs) have become increasingly common, threatening the security of water resources globally. The U.S. Geological Survey conducted high-resolution nearshore mapping surveys using boat-mounted multiparameter sondes and nitrate sensors during the summer and fall of 2019 on Owasco Lake and Seneca Lake, two lakes with documented CyanoHABs in the Finger Lakes region of New York State. Discrete sensor measurements and water-quality samples were collected at fixed points along survey routes and continuous data were generated at open-water monitoring platforms. This investigation examined whether water-quality information from nearshore surveys was representative of open-water conditions and if nearshore surveys could be used to identify areas with localized nearshore CyanoHABs and potential sources of nutrients not captured by tributary sampling. In addition to comparisons across methods, nearshore concentrations of nitrate and chlorophyll were evaluated relative to tributary outlets, cyanobacterial abundance and biovolume at discrete locations, and the locations of near-surface CyanoHABs that were designated as “confirmed with high toxins” by the New York State Department of Environmental Conservation. Nitrate and chlorophyll concentrations were comparable across methods for each lake, although concentration ranges were typically higher for nearshore mapping datasets than for nearshore discrete datasets. Nearshore surveys indicated areas of nitrate enrichment that varied temporally in both lakes. Orthophosphate was not routinely detected. Across methods, median chlorophyll concentrations were higher for the summer survey than for the fall survey in Owasco Lake. Nearshore chlorophyll concentrations varied more temporally in Owasco Lake than in Seneca Lake. Phytoplankton and cyanobacterial abundance and biovolume were about five times higher in Owasco Lake than in Seneca Lake. Cyanobacteria dominated the phytoplankton community in most samples, and Microcystis comprised the bulk of the cyanobacterial biovolume. The most abundant potential cyanotoxin-producing (specifically microcystins) genera were Microcystis , Synechococcus , Aphanocapsa , and Pseudanabaena . The cyanobacterial community composition was comparable between open-water monitoring platforms and nearshore samples. Microcystins were detected in seven survey samples from Owasco Lake, in one survey sample from Seneca Lake, and in one sample each from the open-water monitoring platforms on Owasco and Seneca Lakes that were collected about 7 days before the fall surveys. Microcystin detections were not consistently associated with high cyanobacterial cell counts or cyanotoxin-producing genera. Results from nearshore surveys were comparable to open-water monitoring platforms and discrete nearshore observations in the absence of nearshore or open-water CyanoHABs in these systems during the study. Patterns of nearshore concentrations of nitrate and chlorophyll from nearshore surveys may aid in the identification of areas with localized nitrate loading and shifts in phytoplankton abundance and community composition.

New York