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Dynamic occupancy modeling of temperate marine fish in area-based closures

Species distribution models (SDMs) are commonly used to model the spatial structure of species in the marine environment, however, most fail to account for detectability of the target species. This can result in underestimates of occupancy, where nondetection is conflated with absence. The site occupancy model (SOM) overcomes this failure by treating occupancy as a latent variable of the model and incorporates a detection submodel to account for variability in detection rates. These have rarely been applied in the context of marine fish and never for the multiseason dynamic occupancy model (DOM). In this study, a DOM is developed for a designated species of concern, cusk ( Brosme brosme ), over a four-season period. Making novel use of a high-resolution 3-dimensional hydrodynamic model, detectability of cusk is considered as a function of current speed and algae cover. Algal cover on the seabed is measured from video surveys to divide the study area into two distinct regions: those with canopy forming species of algae and those without (henceforth bottom types). Modeled estimates of the proportion of sites occupied in each season are 0.88, 0.45, 0.74, and 0.83. These are significantly greater than the proportion of occupied sites measured from underwater video observations which are 0.57, 0.28, 0.43, and 0.57. Individual fish are detected more frequently with increasing current speed in areas lacking canopy and less frequently with increasing current speed in areas with canopy. The results indicate that, where possible, SDM studies for all marine species should take account of detectability to avoid underestimating the proportion of sites occupied at a given study area. Sampling closed areas or areas of conservation often requires the use of nonphysical, low impact sampling methods like camera surveys. These methods inherently result in detection probabilities less than one, an issue compounded by time-varying features of the environment that are rarely accounted for marine studies. This work highlights the use of modeled hydrodynamics as a tool to correct some of this imbalance.

Gulf of Maine

Ichthyophonus parasite phylogeny based on ITS rDNA structure prediction and alignment identifies six clades, with a single dominant marine type

Despite their widespread, global impact in both wild and cultured fishes, little is known of the diversity, transmission patterns, and phylogeography of parasites generally identified as Ichthyophonus. This study constructed a phylogeny based on the structural alignment of internal transcribed spacer (ITS) rDNA sequences to compare Ichthyophonus isolates from fish hosts in the Atlantic and Pacific oceans, and several rivers and aquaculture sites in North America, Europe, and Japan. Structure of the Ichthyophonus ITS1–5.8S–ITS2 transcript exhibited several homologies with other eukaryotes, and 6 distinct clades were identified within Ichthyophonus. A single clade contained a majority (71 of 98) of parasite isolations. This ubiquitous Ichthyophonus type occurred in 13 marine and anadromous hosts and was associated with epizootics in Atlantic herring, Chinook salmon, and American shad. A second clade contained all isolates from aquaculture, despite great geographic separation of the freshwater hosts. Each of the 4 remaining clades contained isolates from single host species. This study is the first to evaluate the genetic relationships among Ichthyophonus species across a significant portion of their host and geographic range. Additionally, parasite infection prevalence is reported in 16 fish species.

Diseases of Aquatic Organisms

U.S. Caribbean

Historically, the U.S. Caribbean region has experienced relatively stable seasonal rainfall patterns, moderate annual temperature fluctuations, and a variety of extreme weather events, such as tropical storms, hurricanes, and drought. However, the Caribbean climate is changing and is projected to be increasingly variable as levels of greenhouse gases in the atmosphere increase. The high percentage of coastal area relative to the total island land area in the U.S. Caribbean means that a large proportion of the region’s people, infrastructure, and economic activity are vulnerable to sea level rise, more frequent intense rainfall events and associated coastal flooding, and saltwater intrusion. High levels of exposure and sensitivity to risk in the U.S. Caribbean region are compounded by a low level of adaptive capacity, due in part to the high costs of mitigation and adaptation measures relative to the region’s gross domestic product, particularly when compared to continental U.S. coastal areas. The limited geographic and economic scale of Caribbean islands means that disruptions from extreme climate-related events, such as droughts and hurricanes, can devastate large portions of local economies and cause widespread damage to crops, water supplies, infrastructure, and other critical resources and services. The U.S. Caribbean territories of Puerto Rico and the U.S. Virgin Islands (USVI) have distinct differences in topography, language, population size, governance, natural and human resources, and economic capacity. However, both are highly dependent on natural and built coastal assets; service-related industries account for more than 60% of the USVI economy. Beaches, affected by sea level rise and erosion, are among the main tourist attractions. In Puerto Rico, critical infrastructure (for example, drinking water pipelines and pump stations, sanitary pipelines and pump stations, wastewater treatment plants, and power plants) is vulnerable to the effects of sea level rise, storm surge , and flooding. In the USVI, infrastructure and historical buildings in the inundation zone for sea level rise include the power plants on both St. Thomas and St. Croix; schools; housing communities; the towns of Charlotte Amalie, Christiansted, and Frederiksted; and pipelines for water and sewage. Climate change will likely result in water shortages due to an overall decrease in annual rainfall, a reduction in ecosystem services, and increased risks for agriculture, human health, wildlife, and socioeconomic development in the U.S. Caribbean. These shortages would result from some locations within the Caribbean experiencing longer dry seasons and shorter, but wetter, wet seasons in the future. Extended dry seasons are projected to increase fire likelihood. Excessive rainfall, coupled with poor construction practices, unpaved roads, and steep slopes, can exacerbate erosion rates and have adverse effects on reservoir capacity, water quality, and nearshore marine habitats. Ocean warming poses a significant threat to the survival of corals and will likely also cause shifts in associated habitats that compose the coral reef ecosystem . Severe, repeated, or prolonged periods of high temperatures leading to extended coral bleaching can result in colony death. Ocean acidification also is likely to diminish the structural integrity of coral habitats. Studies show that major shifts in fisheries distribution and changes to the structure and composition of marine habitats adversely affect food security, shoreline protection, and economies throughout the Caribbean. In Puerto Rico, the annual number of days with temperatures above 90°F has increased over the last four and a half decades. During that period, stroke and cardiovascular disease, which are influenced by such elevated temperatures, became the primary causes of death. Increases in average temperature and in extreme heat events will likely have detrimental effects on agricultural operations throughout the U.S. Caribbean region. Many farmers in the tropics, including the U.S. Caribbean, are considered small-holding, limited resource farmers and often lack the resources and/or capital to adapt to changing conditions. Most Caribbean countries and territories share the need to assess risks, enable actions across scales, and assess changes in ecosystems to inform decision-making on habitat protection under a changing climate. U.S. Caribbean islands have the potential to improve adaptation and mitigation actions by fostering stronger collaborations with Caribbean initiatives on climate change and disaster risk reduction.

Report

Systematic characterization of morphotectonic variability along the Cascadia convergent margin: Implications for shallow megathrust behavior and tsunami hazards

Studies of recent destructive megathrust earth­quakes and tsunamis along subduction margins in Japan, Sumatra, and Chile have linked forearc mor­phology and structure to megathrust behavior. This connection is based on the idea that spatial varia­tions in the frictional behavior of the megathrust influence the tectono-morphological evolution of the upper plate. Here we present a comprehen­sive examination of the tectonic geomorphology, outer wedge taper, and structural vergence along the marine forearc of the Cascadia subduction zone (offshore northwestern North America). The goal is to better understand geologic controls on outer wedge strength and segmentation at spatial scales equivalent to rupture lengths of large earthquakes (≥M 6.7), and to examine potential linkages with shallow megathrust behavior. We use cross-margin profiles, spaced 25 km apart, to characterize along-strike variation in outer wedge width, steepness, and structural vergence (measured between the toe and the outer arc high). The width of the outer wedge varies between 17 and 93 km, and the steepness ranges from 0.9° to 6.5°. Hierarchical cluster analysis of outer wedge width and steepness reveals four distinct regions that also display unique patterns of structural ver­gence and shape of the wedge: Vancouver Island, British Columbia, Canada (average width, linear wedge, seaward and mixed vergence); Washington, USA (higher width, concave wedge, landward and mixed vergence); northern and central Oregon, USA (average width, linear and convex wedge, mixed and seaward vergence); and southern Oregon and northern California, USA (lower width, convex wedge, seaward and mixed vergence). Variabil­ity in outer wedge morphology and structure is broadly associated with along-strike megathrust segmentation inferred from differences in oceanic asthenospheric velocities, patterns of episodic tremor and slow slip, GPS models of plate locking, and the distribution of seismicity near the plate interface. In more detail, our results appear to delin­eate the extent, geometry, and lithology of dynamic and static backstops along the margin. Varying backstop configurations along the Cascadia mar­gin are interpreted to represent material-strength contrasts within the wedge that appear to regulate the along- and across-strike taper and structural vergence in the outer wedge. We argue that the morphotectonic variability in the outer wedge may reflect spatial variations in shallow megathrust behavior occurring over roughly the last few million years. Comparing outer wedge taper along the Cascadia margin to a global compilation suggests that observations in the global catalog are not accurately representing the range of hetero­geneity within individual margins and highlights the need for detailed margin-wide morphotectonic analyses of subduction zones worldwide.

British Columbia, California, Oregon, Washington

Structure and morphology of magnetite anaerobically-produced by a marine magnetotactic bacterium and a dissimilatory iron-reducing bacterium

Intracellular crystals of magnetite synthesized by cells of the magnetotactic vibroid organism, MV-1, and extracellular crystals of magnetite produced by the non-magnetotactic dissimilatory iron-reducing bacterium strain GS-15, were examined using high-resolution transmission electron microscopy, electron diffraction and 57 Fe Mo¨ssbauer spectroscopy. The magnetotactic bacterium contained a single chain of approximately 10 crystals aligned along the long axis of the cell. The crystals were essentially pure stoichiometric magnetite. When viewed along the crystal long axis the particles had a hexagonal cross-section whereas side-on they appeared as rectangules or truncated rectangles of average dimension, 53 × 35 nm. These findings are explained in terms of a three-dimensional morphology comprising a hexagonal prism of 110 faces which are capped and truncated by 111 end faces. Electron diffraction and lattice imaging studies indicated that the particles were structurally well-defined single crystals. In contrast, magnetite particles produced by the strain, GS-15 were irregular in shape and had smaller mean dimensions (14 nm). Single crystals were imaged but these were not of high structural perfection. These results highlight the influence of intracellular control on the crystallochemical specificity of bacterial magnetites. The characterization of these crystals is important in aiding the identification of biogenic magnetic materials in paleomagnetism and in studies of sediment magnetization.

Earth and Planetary Science Letters

Factors controlling the abundance of organic sulfur in flash pyrolyzates of Upper Cretaceous kerogens from Sergipe Basin, Brazil

The molecular and elemental composition of immature kerogens isolated from Upper Cretaceous marine carbonates from Sergipe Basin, Brazil were investigated using combined pyrolysis-gas chromatography/mass spectrometry and organic petrographic techniques. The kerogens are predominantly composed of reddish-fluorescing amorphous organic matter (AOM) and variable amounts of yellow-fluorescing alginite and liptodetrinite. The abundance of organic sulfur in the kerogens inferred from the ratio 2-ethyl-5-methylthiophene/(1,2-dimethylbenzene + dec-1-ene) in the pyrolyzates is variable and may be related to changes in the type of primary organic input and/or to variations in rates of bacterial sulfate reduction. A concomitant increase in S/C and O/C ratios determined in situ using the electron microprobe is observed in AOM and alginites and may be related to a progressive oxidation of the organic matter during sulfurization. The S/C ratio of the AOM is systematically higher than the S C ratio of the alginites. Combined with a thiophene distribution characteristic of pyrolyzates of Type II organic matter, the higher S/C of AOM in Sergipe kerogens suggests that sulfurization and incorporation of low-molecular weight lipids derived from normal marine organic matter into the kerogen structure predominated over direct sulfurization of highly aliphatic algal biomacromolecules.The molecular and elemental composition of immature kerogens isolated from Upper Cretaceous marine carbonates from Sergipe Basin, Brazil were investigated using combined pyrolysis-gas chromatography/mass spectrometry and organic petrographic techniques. The kerogens are predominantly composed of reddish-fluorescing amorphous organic matter (AOM) and variable amounts of yellow-fluorescing alginite and liptodetrinite. The abundance of organic sulfur in the kerogens inferred from the ratio 2-ethyl-5-methylthiophene/(1,2-dimethylbenzene+dec-1-ene) in the pyrolyzates is variable and may be related to changes in the type of primary organic input and/or to variations in rates of bacterial sulfate reduction. A concomitant increase in S/C and O/C ratios determined in situ using the electron microprobe is observed in AOM and alginites and may be related to a progressive oxidation of the organic matter during sulfurization. The S/C ratio of the AOM is systematically higher than the S/C ratio of the alginites. Combined with a thiophene distribution characteristic of pyrolyzates of Type II organic matter, the higher S/C of AOM in Sergipe kerogens suggests that sulfurization and incorporation of low-molecular weight lipids derived from normal marine organic matter into the kerogen structure predominated over direct sulfurization of highly aliphatic algal biomacromolecules.

Conference Paper

Topographic complexity and roughness of a tropical benthic seascape

Topographic complexity is a fundamental structural property of benthic marine ecosystems that exists across all scales and affects a multitude of processes. Coral reefs are a prime example, for which this complexity has been found to impact water flow, species diversity, nutrient uptake, and wave-energy dissipation, among other properties. Despite its importance, only limited assessments are available regarding the distribution or range of topographic complexity within or between benthic communities. Here, we show substantial variability in topographic complexity over the entire inner-shelf seascape of a tropical island. Roughness, estimated in terms of fractal dimension, served as a proxy for topographic complexity, and was computed for linear transects (D T ), as well as the benthic surface (D S ). Spatial variability in both D T and D S was correlated with the known distribution of benthic cover types in the seascape. Transect roughness values ranged from 1.0 to 1.7, with features along the shelf edge being markedly anisotropic with an along-shore bias, whereas regions with high scleractinian coral cover were nearly isotropic and exhibited minimal directional bias. Surface-roughness values ranged from 2.0 in predominantly hardbottom areas with low coral cover to 2.5 in areas with high coral cover. Quantifying roughness across the substrates and biological communities for an entire seascape provides a synoptic view of its spatial variability at scales appropriate for numerous research efforts, including ecosystem studies, parameterizing hydrodynamic models, and designing monitoring programs.

Geophysical Research Letters

Comagmatic A-type granophyre and rhyolite from the Alid volcanic center, eritrea, northeast Africa

Granophyric blocks within late-Pleistocene pyroclastic flow ejecta from the Alid volcanic center, northeast Africa, are the rapidly crystallized, intrusive equivalent of pumice from the pyroclastic flow. Phenocryst compositions and geochemical characteristics of the pumice and granophyre are virtually identical. Silicate melt inclusions and other geochemical and geological constraints reveal those processes leading to development of the granophyric texture. Rhyolitic (A-type) magma with ∼2.6 wt % dissolved H 2 O and a temperature near 870°C was intruded to within 2–4 km of the surface, causing deformation and structural doming of shallow marine and subaerial strata. Eruptions of crystal-poor rhyolite from this shallow magma chamber caused degassing, which forced undercooling and consequent granophyric crystallization of some of the magma remaining in the intrusion. The most recent eruption from Alid excavated the crystallized granitic wall of the magma chamber, bringing the granophyric clasts to the surface.

Journal of Petrology

Classification of wetlands and deepwater habitats of the United States

This classification, to be used in a new inventory of wetlands and deepwater habitats of the United States, is intended to describe ecological taxa, arrange them in a system useful to resource managers, furnish units for mapping, and provide uniformity of concepts and terms. Wetlands are defined by plants (hydrophytes), soils (hydric soils), and frequency of flooding. Ecologically related areas of deep water, traditionally not considered wetlands, are included in the classification as deepwater habitats.Systems form the highest level of the classification hierarchy; five are defined-Marine, Estuarine, Riverine, Lacustrine, and Palustrine. Marine and Estuarine Systems each have two Subsystems, Subtidal and Intertidal; the Riverine System has four Subsystems, Tidal, Lower Perennial, Upper Perennial, and Intermittent; the Lacustrine has two, Littoral and Limnetic; and the Palustrine has no Subsystems.Within the Subsystems, Classes are based on substrate material and flooding regime, or on vegetative life form. The same Classes may appear under one or more of the Systems or Subsystems. Six Classes are based on substrate and flooding regime: (1) Rock Bottom with a substrate of bedrock, boulders, or stones; (2) Unconsolidated Bottom with a substrate of cobbles, gravel, sand, mud, or organic material; (3) Rocky Shore with the same substrates as Rock Bottom; (4) Unconsolidated Shore with the same substrates as Unconsolidated Bottom; (5) Streambed with any of the substrates; and (6) Reef with a substrate composed of the living and dead remains of invertebrates (corals, mollusks, or worms). The bottom Classes, (1) and (2) above, are flooded all or most of the time and the shore Classes, (3) and (4), are exposed most of the time. The Class Streambed is restricted to channels of intermittent streams and tidal channels that are dewatered at low tide. The life form of the dominant vegetation defines the five Classes based on vegetative form: (1) Aquatic Bed, dominated by plants that grow principally on or below the surface of the water; (2) Moss-Lichen Wetland, dominated by mosses or lichens; (3) Emergent Wetland, dominated by emergent herbaceous angiosperms; (4) Scrub-Shrub Wetland, dominated by shrubs or small trees; and (5) Forested Wetland, dominated by large trees.The Dominance Type, which is named for the dominant plant or animal forms, is the lowest level of the classification hierarchy. Only examples are provided for this level; Dominance Types must be developed by individual users of the classification.Modifying terms applied to the Classes or Subclasses are essential for use of the system. In tidal areas, the type and duration of flooding are described by four Water Regime Modifiers: subtidal, irregularly exposed, regularly flooded, and irregularly flooded. In nontidal areas, eight Regimes are used: permanently flooded, intermittently exposed, semipermanently flooded, seasonally flooded, saturated, temporarily flooded, intermittently flooded, and artificially flooded. A hierarchical system of Water Chemistry Modifiers, adapted from the Venice System, is used to describe the salinity of the water. Fresh waters are further divided on the basis of pH. Use of a hierarchical system of soil modifiers taken directly from U.S. soil taxonomy is also required. Special modifiers are used where appropriate: excavated, impounded, diked, partly drained, farmed, and artificial.Regional differences important to wetland ecology are described through a regionalization that combines a system developed for inland areas by R. G. Bailey in 1976 with our Marine and Estuarine provinces.The structure of the classification allows it to be used at any of several hierarchical levels. Special data required for detailed application of the system are frequently unavailable, and thus data gathering may be prerequisite to classification. Development of rules by the user will be required for specific map scales. Dominance Types and relationships of plant and anima

FWS/OBS

Classification of wetlands and deepwater habitats of the United States

This classification, to be used in a new inventory of wetlands and deepwater habitats of the United States, is intended to describe ecological taxa, arrange them in a system useful to resource managers, furnish units for mapping, and provide uniformity of concepts and terms. Wetlands are defined by plants (hydrophytes), soils (hydric soils), and frequency of flooding. Ecologically related areas of deep water, traditionally not considered wetlands, are included in the classification as deepwater habitats.Systems form the highest level of the classification hierarchy; five are defined--Marine, Estuarine, Riverine, Lacustrine, and Palustrine. Marine and Estuarine systems each have two subsystems, Subtidal and Intertidal; the Riverine system has four subsystems, Tidal, Lower Perennial, Upper Perennial, and Intermittent; the Lacustrine has two, Littoral and Limnetic; and the Palustrine has no subsystem.Within the subsystems, classes are based on substrate material and flooding regime, or on vegetative life form. The same classes may appear under one or more of the systems or subsystems. Six classes are based on substrate and flooding regime: (1) Rock Bottom with a substrate of bedrock, boulders, or stones; (2) Unconsolidated Bottom with a substrate of cobbles, gravel, sand, mud, or organic material; (3) Rocky Shore with the same substrate as Rock Bottom; (4) Unconsolidated Shore with the same substrate as Unconsolidated Bottom; (5) Streambed with any of the substrates; and (6) Reef with a substrate composed of the living and dead remains of invertebrates (corals, mollusks, or worms). The bottom classes, (1) and (2) above, are flooded all or most of the time and the shore classes, (3) and (4), are exposed most of the time. The class Streambed is restricted to channels of intermittent streams and tidal channels that are dewatered at low tide. The life form of the dominant vegetation defines the five classes based on vegetative form: (1) Aquatic Bed, dominated by plants that grow principally on or below the surface of the water; (2) Moss-Lichen Wetland, dominated by mosses or lichens; (3) Emergent Wetland, dominated by emergent herbaceous angiosperms; (4) Scrub-Shrub Wetland, dominated by shrubs or small trees; and (5) Forested Wetland, dominated by large trees.The dominance type, which is named for the dominant plant or animal forms, is the lowest level of the classification hierarchy. Only examples are provided for this level; dominance types must be developed by individual users of the classification.Modifying terms applied to the classes or subclasses are essential for use of the system. In tidal areas, the type and duration of flooding are described by four water regime modifiers: subtidal, irregularly exposed, regularly flooded, and irregularly flooded. In nontidal areas, six regimes are used: permanently flooded, intermittently exposed, semipermanently flooded, seasonally flooded, saturated, temporarily flooded, intermittently flooded, and artificially flooded. A hierarchical system of water chemistry modifiers, adapted from the Venice System, is used to describe the salinity of the water. Fresh waters are further divided on the basis of pH. Use of a hierarchical system of soil modifiers taken directly from U.S. soil taxonomy is also required. Special modifiers are used where appropriate: excavated, impounded, diked, partly drained, farmed, and artificial.Regional differences important to wetland ecology are described through a regionalization that combines a system developed for inland areas by R. G. Bailey in 1976 with our Marine and Estuarine provinces.The structure of the classification allows it to be used at any of several hierarchical levels. Special data required for detailed application of the system are frequently unavailable, and thus data gathering may be prerequisite to classification. Development of rules by the user will be required for specific map scales. Dominance types and relationships of plant and animal co

FWS/OBS

Examining 22 years of ambient seismic wavefield at Mount St. Helens

An increase in seismic activity precedes most volcanic eruptions. Whereas event-based forecasting approaches have been successful, some eruptions remain unanticipated, resulting in casualties and damage. Our study leverages the recent advancements in ambient field seismology. We explore features extracted from continuous ambient fields using traditional methods, for example, peak ground velocity, peak ground acceleration, root mean square, root median square, real-time seismic amplitude measurement, and novel methods (displacement seismic amplitude ratio and spectral width). In addition, we explore unsupervised learning of higher order wavelet features using scattering networks. We find that combining all the methods was necessary to disentangle the effects of seismic sources from structural changes at Mount St. Helens. Although the ambient wavefield-based approach does not yield additional or more significant precursory signals than event-based methods at Mount St. Helens, our study demonstrates that the ambient wavefield provides supplementary information, mainly about structural changes and complements traditional methods. The ambient seismic wavefield offers additional insights into long-lasting processes. We find enhanced wave attenuation correlating with geochemical measurements. We interpret this as ongoing structural changes, such as dome growth or the evolution of the volcanic conduit system. On annual and decadal timescales, we interpret seasonal seismic attenuation in the shallow subsurface as groundwater fluctuations, corroborated by observations at the nearby Spirit Lake level. This multimethod approach at Mount St. Helens sheds light on a volcanic system’s underlying dynamics and structure.

Washington

High-resolution marine seismic reflection data from the San Francisco Bay area

Between 1993 and 1997, the U.S. Geological Survey acquired high-resolution, marine seismic-reflection profile data across submerged portions of known and inferred upper crustal fault zones throughout the greater San Francisco Bay area. Surveys were conducted oversouth San Francisco Bay in the vicinity of the San Bruno shoal (roughly between the San Francisco and Oakland airports), over the offshore extension of the San Andreas fault system west of the Golden Gate, over the Hayward fault to Rodgers Creek fault step-over in San Pablo Bay, and over the Kirby Hills fault where it crosses the western Sacramento Delta. Reconnaissance profiles were acquired elsewhere throughout the San Francisco and San Pablo Bays. These data were acquired by the U.S. Geological Survey, Western Coastal and Marine Geology Team, under the auspices of the Central California/San Francisco Bay Earthquake Hazards Project. Analysis and interpretation of some of these profiles has been published by Marlow and others (1996, 1999). Further analysis and interpretation of these data are available in a USGS. Professional Paper Crustal Structure of the Coastal and Marine San Francisco Bay Region, T. Parsons, editor, http://geopubs.wr.usgs.gov/prof-paper/pp1658/ [link added 2012 mfd].

California

Activity patterns of anadromous fish below a tide gate: Observations from high‐resolution imaging sonar

The construction of dams and tide gates on waterways has altered the physical structure of many coastal, estuarine, and freshwater systems. These changes have come at a cost to fish populations, most notably diadromous species, which rely on connectivity between marine and freshwater systems. These anthropogenic structures can have direct effects on migrating fish, such as blocking fish passage, or have more subtle effects, such as changing movement patterns. This study used a high‐resolution Adaptive Resolution Imaging Sonar to examine the behavior of Striped Bass Morone saxatilis , a large coastal predator, and Alewife Alosa pseudoharengus and Blueback Herring Alosa aestivalis (collectively known as river herring), which are forage fish, below a tide gate structure on the Herring River in Wellfleet, Massachusetts, during the river herring spring spawning run. Striped Bass were persistently present downstream of the tide gate and exhibited strong diurnal and tidal patterns. Activity of Striped Bass was highest at night and during ebb tides. During peak outflow periods, river herring were observed milling downstream of the dam in a scour pool, indicating delayed upstream passage. River herring upstream migration was primarily associated with daytime and during incoming tides. Downstream‐migrating river herring were primarily observed during nighttime hours. While it was documented that the tide gates provided a physical impediment to migration, their effect on predator behavior could pose an additional challenge to migrating river herring, further complicating their recovery efforts. Due to the prevalence of obstructed waterways, studying the behavior of fish around anthropogenic structures is important in understanding the full range of impacts that these systems have under varying ecological conditions and on ecological relationships.

Massachusetts

Results of an adaptive environmental assessment modeling workshop concerning potential impacts of drilling muds and cuttings on the marine environment

Drilling fluids or "muds" are essential components of modern drilling operations. They provide integrity for the well bore, a medium for removal of formation cuttings, and lubrication and cooling of the drill bit and pipe. The modeling workshop described in this report was conducted September 14-18, 1981 in Gulf Breeze, Florida to consider potential impacts of discharged drilling muds and cuttings on the marine environment. The broad goals of the workshop were synthesis of information on fate and effects, identification of general relationships between drilling fluids and the marine environment, and identification of site-specific variables likely to determine impacts of drilling muds and cuttings in various marine sites. The workshop was structured around construction of a model simulating fate and effects of discharges from a single rig into open water areas of the Gulf of Mexico, and discussion of factors that might produce different fate and effects in enclosed areas such as bays and estuaries. The simulation model was composed of four connected submodels. A Discharge/Fate submodel dealt with the discharge characteristics of the rig and the subsequent fate of discharged material. Three effects submodels then calculated biological responses at distances away from the rig for the water column, soft bottom benthos (assuming the rig was located over a soft bottom environment), and hard bottom benthos (assuming the rig was located over a hard bottom environment). The model focused on direct linkages between the discharge and various organisms rather than on how the marine ecosystem itself is interconnected. Behavior of the simulation model indicated relatively localized effects of drilling muds and cuttings discharged from a single platform into open water areas. Water column fate and effects were dominated by rapid dilution. Effects from deposition of spent mud and cuttings were spatially limited with relatively rapid recovery, especially in soft bottom benthic communities which were conceptualized as being adapted to frequent storms. This behavior was generated by the set of assumptions about linkages and functional relationships used to construct the model. Areas of uncertainty included methods for extrapolating 96-hr LC50 so results to exposures of varying lengths and concentrations; recovery rates of benthic communities; responses to various depths and rates of burial; fate and effects of the plume in relationship to stratification layers; and long-term and sub-lethal effects of slightly elevated concentrations of discharged materials. Evaluation of the assumptions of the Soft Bottom Submodel suggest that the assumptions used may have been relatively liberal estimates of resiliency of these communities. Discussion of "closed" water bodies such as bays and estuaries indicated several reasons to expect different and more complex fate and effects behavior in these areas. These factors included different species and communities (such as aquatic macrophytes and oyster beds), more complex circulation and stratification patterns, and potentially more active resuspension processes. Much of the possible difference in behavior in these areas centers around the extent to which they are “closed” or in the relative residence times of water and sediments in these areas as they determine the long-term dispersion of discharged material. Despite the complexity and variability of these areas, a large body of knowledge (such as that concerning fate and physical effects of dredge spoil) that could be effectively employed in analysis of potential fate and physical effects in enclosed areas was identified.

Report

Structural framework of United States Atlantic outer continental shelf north of Cape Hatteras

To assess the area’s hydrocarbon potential, regional geologic and geophysical studies are being conducted by the U.S. Geological Survey to determine the structural framework of the United States Atlantic outer continental shelf (AOCS) north of Cape Hatteras. Preliminary interpretations of geophysical data suggest that the buried ridge under the eastern edge of the AOCS in the Baltimore Canyon trough area is deeper and farther west than previously suspected. Although it is not observed under the seaward extension of the Cape Fear arch, this ridge can be traced from the south side of the Baltimore Canyon trough northeastward toward the eastern edge of the Georges Bank trough. In the Baltimore Canyon trough area, the ridge seems to be fault controlled and to form the eastern edge of a Mesozoic depocenter in which approximately 12 km of relatively undisturbed post-Paleozoic sediments accumulated. Below a depth of 6 km, rocks previously considered to be crystalline basement instead may be carbonate and/or evaporite sequences of Jurassic age or older which overlie an even deeper crystalline basement. More than 8 km of sediments are present beneath the continental shelf on Georges Bank. The preliminary regional geophysical studies indicate that thick marine sedimentary sections and geologic structures favorable for the accumulation of petroleum apparently exist under the AOCS off the northeastern part of the United States.

Atlantic outer continental shelf

Urban seismic experiments investigate Seattle fault and basin

In the past decade, Earth scientists have recognized the seismic hazards that crustal faults and sedimentary basins pose to Seattle, Washington (Figure 1). In 1998, the US. Geological Survey and its collaborators initiated a series of urban seismic studies of the upper crust to better map seismogenic structures and sedimentary basins in the Puget Lowland. These studies are called the Seismic Hazard Investigations of Puget Sound (SHIPS). In March 1998, we conducted our first SHIPS study, an investigation of the upper crustal structure of the Puget Lowland, using marine airgun sources and land recorders [ Fisher et al. , 1999].The study was nicknamed Wet SHIPS. In September 1999, we obtained a seismic refraction line to study the upper crustal structure in the Seattle area in a land-based study nicknamed Dry SHIPS [ Brocher et al. , 2000] (Figure 1). In March 2000, we recorded the demolition of the Seattle Kingdome sports stadium using a dense array of seismic recorders for a detailed site response study; this study was nicknamed Kingdome SHIPS (Figure 1).

Washington

Offshore and onshore liquefaction at Moss Landing spit, central California, - result of the October 17, 1989, Loma Prieta earthquake

As a result of the October 17, 1989, Loma Prieta (Santa Cruz Mountains, California) earthquake, liquefaction of the fluvial, estuarine, eolian, and beach sediments under a sand spit destroyed the Moss Landing Marine Laboratories and damaged other structures and utilities. Initial studies suggested that the liquefaction was a local phenomenon. More detailed offshore investigations, however, indicate that it occurred over a large area (max. 8 km 2 ) during or shortly after the earthquake with movement of unconsolidated sediment toward and into the head of Monterey submarine canyon. This conclusion is supported by side-scan sonographs, high-resolution seismic-reflection and bathymetric profiles, onshore and sea-floor photographs, and underwater video tapes. Many distinct lobate features were identified on the shallow shelf. These features almost certainly were the result of the October 17 earthquake; they were subsequently destroyed by winter storms. In addition, fresh slump scars and recently dislodged mud debris were found on the upper, southern wall of Monterey submarine canyon.

Geology