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At least 55 records · Page 3Linked to original sources

Effect of a levee setback on aquatic resources using two-dimensional flow and bioenergetics models

Watershed restoration is the focus of many resource managers and can include a multitude of restoration actions each with specific restoration objectives. For the White River flowing through the cities of Pacific and Sumner, Washington, a levee setback has been proposed to reconnect the river with its historical floodplain to help reduce flood risks, as well as provide increased habitat for federally listed species of salmonids. The study presented here documents the use of a modeling framework that integrates two-dimensional hydraulic modeling with process-based bioenergetics modeling for predicting how changes in flow from reconnecting the river with its floodplain affects invertebrate drift density and the net rate of energy intake of juvenile salmonids. Modeling results were calculated for flows of 25.9 and 49.3 cubic meters per second during the spring, summer, and fall. Predicted hypothetical future mean velocities and depths were significantly lower and more variable when compared to current conditions. The abundance of low energetic cost and positive growth locations for salmonids were predicted to increase significantly in the study reach following floodplain reconnection, particularly during the summer. This modeling framework presents a viable approach for evaluating the potential fisheries benefits of reconnecting a river to its historical floodplain that integrates our understanding of hydraulic, geomorphology, and organismal biology.

Washington

Density dependence and weather drive dabbling duck spatiotemporal distributions and intercontinental migration

Understanding migratory waterfowl spatiotemporal distributions is important because, in addition to their economic and cultural value, wild waterfowl can be infectious reservoirs of highly pathogenic avian influenza virus (HPAIV). Waterfowl migration has been implicated in regional and intercontinental HPAIV dispersal, and predictive capabilities of where and when HPAIV may be introduced to susceptible spillover hosts would facilitate biosecurity and mitigation efforts. To develop forecasts for HPAIV dispersal, an improved understanding of how individual birds interact with their environment and move on a landscape scale is required. Using an agent-based modeling approach, we integrated individual-scale energetics, species-specific morphology and behavior, and landscape-scale weather and habitat data in a mechanistic stochastic framework to simulate Mallard ( Anas platyrhynchos ) and Northern Pintail ( Anas acuta ) annual migration across the Northern Hemisphere. Our model recreated biologically realistic migratory patterns using a first principles approach to waterfowl ecology, behavior, and physiology. Conducting a limited structural sensitivity analysis comparing reduced models to eBird Status and Trends in reference to the full model, we identified density dependence as the main factor influencing spring migration and breeding distributions, and wind as the main factor influencing fall migration and overwintering distributions. We show evidence of weather patterns in Northeast Asia causing significant intercontinental pintail migration to North America. By linking individual energetics to landscape-scale processes, we identify key drivers of waterfowl migration while developing a predictive model responsive to daily weather patterns. This model paves the way for future waterfowl migration research predicting HPAIV transmission, climate change impacts, and oil spill effects.

Avian Research

Choosing indicators of natural resource condition: A case study in Arches National Park, Utah, USA

Heavy visitor use in many areas of the world have necessitated development of ways to assess visitation impacts. Arches National Park recently completed a Visitor Experience and Resource Protection (VERP) plan. Integral to this plan was developing a method to identify biological indicators that would both measure visitor impacts and response to management actions. The process used in Arches for indicator selection is outlined here as a model applicable to many areas facing similar challenges. The steps were: (1) Vegetation types most used by visitors were identified. Impacted and unimpacted areas in these types were sampled, comparing vegetation and soil factors. (2) Variables found to differ significantly between compared sites were used as potential indicators. (3) Site-specific criteria for indicators were developed, and potential indicators evaluated using these criteria. (4) Chosen indicators were further researched for ecological relevancy. (5) Final indicators were chosen, field tested, and monitoring sites designated. In Arches, indicators were chosen for monitoring annually (soil crust index, soil compaction, number of used social trails and soil aggregate stability) and every five years (vegetation cover and frequency; ground cover; soil chemistry; and plant tissue chemistry).

Environmental Management

Directional connectivity in hydrology and ecology

Quantifying hydrologic and ecological connectivity has contributed to understanding transport and dispersal processes and assessing ecosystem degradation or restoration potential. However, there has been little synthesis across disciplines. The growing field of ecohydrology and recent recognition that loss of hydrologic connectivity is leading to a global decline in biodiversity underscore the need for a unified connectivity concept. One outstanding need is a way to quantify directional connectivity that is consistent, robust to variations in sampling, and transferable across scales or environmental settings. Understanding connectivity in a particular direction (e.g., streamwise, along or across gradient, between sources and sinks, along cardinal directions) provides critical information for predicting contaminant transport, planning conservation corridor design, and understanding how landscapes or hydroscapes respond to directional forces like wind or water flow. Here we synthesize progress on quantifying connectivity and develop a new strategy for evaluating directional connectivity that benefits from use of graph theory in ecology and percolation theory in hydrology. The directional connectivity index (DCI) is a graph-theory based, multiscale metric that is generalizable to a range of different structural and functional connectivity applications. It exhibits minimal sensitivity to image rotation or resolution within a given range and responds intuitively to progressive, unidirectional change. Further, it is linearly related to the integral connectivity scale length—a metric common in hydrology that correlates well with actual fluxes—but is less computationally challenging and more readily comparable across different landscapes. Connectivity-orientation curves (i.e., directional connectivity computed over a range of headings) provide a quantitative, information-dense representation of environmental structure that can be used for comparison or detection of subtle differences in the physical-biological feedbacks driving pattern formation. Case-study application of the DCI to the Everglades in south Florida revealed that loss of directional hydrologic connectivity occurs more rapidly and is a more sensitive indicator of declining ecosystem function than other metrics (e.g., habitat area) used previously. Here and elsewhere, directional connectivity can provide insight into landscape drivers and processes, act as an early-warning indicator of environmental degradation, and serve as a planning tool or performance measure for conservation and restoration efforts.

Ecological Applications

2007 Weather and Aeolian Sand-Transport Data from the Colorado River Corridor, Grand Canyon, Arizona

Weather data constitute an integral part of ecosystem monitoring in the Colorado River corridor and are particularly valuable for understanding processes of landscape change that contribute to the stability of archeological sites. Data collected in 2007 are reported from nine weather stations in the Colorado River corridor through Grand Canyon, Ariz. The stations were deployed in February and March 2007 to measure wind speed and direction, rainfall, air temperature, relative humidity, and barometric pressure. Sand traps near each weather station collect windblown sand, from which daily aeolian sand-transport rates are calculated. The data reported here were collected as part of an ongoing study to test and evaluate methods for quantifying processes that affect the physical integrity of archeological sites along the river corridor; as such, these data can be used to identify rainfall events capable of causing gully incision and to predict likely transport pathways for aeolian sand, two landscape processes integral to the preservation of archeological sites. Weather data also have widespread applications to other studies of physical, cultural, and biological resources in Grand Canyon. Aeolian sand-transport data reported here, collected in the year before the March 2008 High-Flow Experiment (HFE) at Glen Canyon Dam, represent baseline data against which the effects of the 2008 HFE on windblown sand will be compared in future reports.

Open-File Report

Biomonitors of stream quality on agricultural areas: fish versus invertebrates

Although the utility of using either fish or benthic invertebrates as biomonitors of stream quality has been clearly shown, there is little comparative information on the usefulness of the groups in any particular situation. We compared fish to invertebrate assemblages in their ability to reflect habitat quality of sediment-impacted streams in agricultural regions of northeast Missouri, USA. Habitat quality was measured by a combination of substrate composition, riparian type, buffer strip width, and land use. Invertebrates were more sensitive to habitat differences when structural measurements, species diversity and ordination, were used. Incorporating ecological measurements, by using the Index of Biological Integrity, increased the information obtained from the fish assemblage. The differential response of the two groups was attributed to the more direct impact of sediments on invertebrate life requisites; the impact of sedimentation on fish is considered more indirect and complex, affecting feeding and reproductive mechanisms.

Environmental Management

The Index of Biological Integrity and the bootstrap revisited: an example from Minnesota streams

Multimetric indices, such as the Index of Biological Integrity (IBI), are increasingly used by management agencies to determine whether surface water quality is impaired. However, important questions about the variability of these indices have not been thoroughly addressed in the scientific literature. In this study, we used a bootstrap approach to quantify variability associated with fish IBIs developed for streams in two Minnesota river basins. We further placed this variability into a management context by comparing it to impairment thresholds currently used in water quality determinations for Minnesota streams. We found that 95% confidence intervals ranged as high as 40 points for IBIs scored on a 0–100 point scale. However, on average, 90% of IBI scores calculated from bootstrap replicate samples for a given stream site yielded the same impairment status as the original IBI score. We suggest that sampling variability in IBI scores is related to both the number of fish and the number of rare taxa in a field collection. A comparison of the effects of different scoring methods on IBI variability indicates that a continuous scoring method may reduce the amount of bias in IBI scores.

Minnesota

Potential for biological effects of per- and polyfluoroalkyl substances in Great Lakes tributaries and associations with land cover and wastewater effluent

Surface water concentrations of per- and polyfluoroalkyl substances (PFAS) and potential for resulting biological effects were estimated in a study using polar organic chemical integrative samplers (POCIS) from 60 tributary sites within 20 watersheds in the Great Lakes Basin in 2018. Sites represented a range of urban to agricultural, forested, and wetland land uses and included a gradient of wastewater treatment effluent from zero to 44% of annual streamflow. Several sites also had airport influence. Twenty-one of 32 targeted PFAS compounds were detected in POCIS samplers, of which, 16 had available POCIS sampling rates, enabling time-weighted water concentration estimates and comparison with available effects data. Estimated water concentrations were compared with published water quality guidelines (available for nine PFAS), effect concentrations reported in primary literature within the ECOTOX Knowledgebase for apical endpoints (10 PFAS) and nonapical endpoints (10 PFAS), and in vitro high-throughput screening data from the U.S. Environmental Protection Agency Toxicity Forecaster (ToxCast; 14 PFAS). Based on a conservative evaluation approach that was also weighted for persistence and limitations in available toxicological information, five individual PFAS, including perfluorooctanesulfonic acid, perfluorohexanesulfonic acid, perfluorobutanesulfonic acid, perfluorooctanoic acid, and perfluorononanoic acid were identified as warranting additional investigation. Possible increased potency of PFAS mixtures over individual chemical effects, estimated by summation of exposure-activity ratios (EARs) for chemicals that influence common ToxCast assays and specified gene targets, indicated that EAR values increased up to 5.6-fold over individual chemicals, with up to 14 chemicals contributing to mixture effect predictions. Potential for biological effects from PFAS, as estimated by summed exposure-activity ratios, were correlated with urban land use and the proportion of streamflow contributed by wastewater effluent.

Great Lakes tributaries

Greater than the sum of its parts: Computationally flexible Bayesian hierarchical modeling

We propose a multistage method for making inference at all levels of a Bayesian hierarchical model (BHM) using natural data partitions to increase efficiency by allowing computations to take place in parallel form using software that is most appropriate for each data partition. The full hierarchical model is then approximated by the product of independent normal distributions for the data component of the model. In the second stage, the Bayesian maximum a posteriori (MAP) estimator is found by maximizing the approximated posterior density with respect to the parameters. If the parameters of the model can be represented as normally distributed random effects, then the second-stage optimization is equivalent to fitting a multivariate normal linear mixed model. We consider a third stage that updates the estimates of distinct parameters for each data partition based on the results of the second stage. The method is demonstrated with two ecological data sets and models, a generalized linear mixed effects model (GLMM) and an integrated population model (IPM). The multistage results were compared to estimates from models fit in single stages to the entire data set. In both cases, multistage results were very similar to a full MCMC analysis. Supplementary materials accompanying this paper appear online.

Journal of Agricultural, Biological and Environmen

Integrated distribution modeling resolves asynchrony between bat population impacts and occupancy trends through latent abundance

Monitoring populations is challenging for cryptic species with seasonal life cycles, where data from multiple field techniques are commonly collected and analyzed as multiple lines of evidence. Data integration can provide comprehensive inferences while improving accuracy, precision, and scope but faces challenges in modeling misaligned resolutions and observational uncertainties. We developed a multi-scale, integrated species distribution model (MS-iSDM) for North American bats to combine data across monitoring types and seasons using joint likelihood methods, observational models with false-negatives and false-positives, and seasonal migratory connectivity. We applied this model to 11 years of data for an imperiled bat species (tricolored bat, Perimyotis subflavus ). Relative abundance and occupancy were linked with multi-scale predictors, revealing clear patterns of population declines, but with important differences in spatial trends (abundance: corresponded with white-nose syndrome impacts, occupancy: at the range periphery) and overall severity (abundance: -74.8%, 95% CRI: -79.7% to -69.3%; occupancy: -35.5%, 95% CRI: -41.1% to -30.2%). The asynchrony between occupancy trends and population impacts was explained as an emergent pattern of spatiotemporal variation in abundance in the integrated distribution model. Compared to multiple lines of evidence, the integrated model provided consensus-estimates, increased precision and spatiotemporal scope, and strengthened evidence of population declines.

Communications Biology

A review of coastal management approaches to support the integration of ecological and human community planning for climate change

The resilience of socio-ecological systems to sea level rise, storms and flooding can be enhanced when coastal habitats are used as natural infrastructure. Grey infrastructure has long been used for coastal flood protection but can lead to unintended negative impacts. Natural infrastructure often provides similar services as well as added benefits that support short- and long-term biological, cultural, social, and economic goals. While natural infrastructure is becoming more widespread in practice, it often represents a relatively small fraction within portfolios of coastal risk-reducing strategies compared to more traditional grey infrastructure. This study provides a comprehensive review of how natural infrastructure is being used along the United States Atlantic, Gulf of Mexico, and Caribbean coasts related to four habitats – tidal marshes, beaches and barrier islands, mangroves, and biogenic reefs. We compare information on the benefits, opportunities and challenges of implementing natural, grey and hybrid infrastructure in the coastal zone. In addition, we present a suite of actions to increase information and reduce uncertainty so that coastal mangers and planners are aware of the full suite of options for restoration, conservation and planning that maximize ecosystem services over short- and long-term planning horizons.

Journal of Coastal Conservation

Multiple lines of evidence for identifying potential hazards to fish from contaminants of emerging concern in Great Lakes tributaries

Contaminants of emerging concern (CECs; e.g., pharmaceuticals, flame retardants, pesticides, and industrial chemicals) are omnipresent throughout tributaries to the Great Lakes. Furthermore, CECs are often present at concentrations that are potentially hazardous to aquatic species. Since 2010, we characterized the presence of CECs at 309 sites within 47 Great Lakes tributaries and characterized responses of fathead minnow ( Pimephales promelas ) exposed to river water at a subset of 26 sites within four tributaries. Our work resulted in three independent lines of evidence related to the potential hazards of CEC exposure to fish. First, vulnerability (where vulnerability refers to likelihood) of surface waters to CEC presence was predicted using select watershed characteristics. Second, hazard to fish (where hazard means the potential for adverse biological responses) was predicted using screening values for a subset of CECs. Third, biological responses of fathead minnow exposed to river water in streamside exposures were measured. We assessed the congruence of these three lines of evidence for identifying sites with elevated hazards to CEC exposure. Predicted vulnerability and hazards agreed at 66% of all sites. Where the two indices did not agree, vulnerability often underestimated predicted hazard. When compared with measured biological responses from streamside exposures, predicted hazards agreed for 42% of samples. Furthermore, when predicted hazards for specific effect categories were compared with similar measured biomarkers, 26% and 46% of samples agreed for reproductive and physiological effect categories, respectively. Overall, vulnerability and hazard predictions tended to overestimate the measured biological responses, providing a protective estimate of the potential hazards of CEC exposure to fish. When used together, these three approaches can help resource managers prioritize management activities in minimizing hazards of CEC exposure and can be used by researchers to prioritize studies focused on understanding the hazards of CEC exposure to fish. Integr Environ Assess Manag 2022;18:1246–1259. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC). This article has been contributed to by US Government employees and their work is in the public domain in the USA.

Great Lakes

Conservation genetics of Lake Superior brook trout: Issues, questions, and directions

Parallel efforts by several genetic research groups have tackled common themes relating to management concerns about and recent rehabilitation opportunities for coaster brook trout Salvelinus fontinalis in Lake Superior. The questions that have been addressed include the evolutionary and genetic status of coaster brook trout, the degree of relatedness among coaster populations and their relationship to riverine tributary brook trout populations, and the role and effectiveness of stocking in maintaining and restoring coasters to Lake Superior. Congruent genetic results indicate that coasters are an ecotype (life history variant) rather than an evolutionarily significant unit or genetically distinct strain. Regional structure exists among brook trout stocks, coasters being produced from local populations. Introgression of hatchery genes into wild populations appears to vary regionally and may relate to local population size, habitat integrity, and anthropogenic pressures. Tracking the genetic diversity and integrity associated with captive breeding programs is helping to ensure that the fish used for stocking are representative of their source populations and appropriate for rehabilitation efforts. Comparative analysis of shared samples among collaborating laboratories is enabling standardization of genotype scoring and interpretation as well as the development of a common toolkit for assessing genetic structure and diversity. Incorporation of genetic data into rehabilitation projects will facilitate monitoring efforts and subsequent adaptive management. Together, these multifaceted efforts provide comprehensive insights into the biology of coaster brook trout and enhance restoration options. ?? Copyright by the American Fisheries Society 2008.

Conference Paper

Improving the design of amphibian surveys using soil data: A case study in two wilderness areas

Amphibian populations are known, or thought to be, declining worldwide. Although protected natural areas may act as reservoirs of biological integrity and serve as benchmarks for comparison with unprotected areas, they are not immune from population declines and extinctions and should be monitored. Unfortunately, identifying survey sites and performing long-term fieldwork within such (often remote) areas involves a special set of problems. We used the USDA Natural Resource Conservation Service Soil Survey Geographic (SSURGO) Database to identify, a priori, potential habitat for aquatic-breeding amphibians on North and South Manitou Islands, Sleeping Bear Dunes National Lakeshore, Michigan, and compared the results to those obtained using National Wetland Inventory (NWI) data. The SSURGO approach identified more target sites for surveys than the NWI approach, and it identified more small and ephemeral wetlands. Field surveys used a combination of daytime call surveys, night-time call surveys, and perimeter surveys. We found that sites that would not have been identified with NWI data often contained amphibians and, in one case, contained wetland-breeding species that would not have been found using NWI data. Our technique allows for easy a priori identification of numerous survey sites that might not be identified using other sources of spatial information. We recognize, however, that the most effective site identification and survey techniques will likely use a combination of methods in addition to those described here.

Natural Areas Journal

Discontinuities in stream nutrient uptake below lakes in mountain drainage networks

In many watersheds, lakes and streams are hydrologically linked in spatial patterns that influence material transport and retention. We hypothesized that lakes affect stream nutrient cycling via modifications to stream hydrogeomorphology, source-waters, and biological communities. We tested this hypothesis in a lake district of the Sawtooth Mountains, Idaho. Uptake of NO3- and PO4-3 was compared among 25 reaches representing the following landscape positions: lake inlets and outlets, reaches >1-km downstream from lakes, and reference reaches with no nearby lakes. We quantified landscape-scale hydrographic and reach-scale hydrogeomorphic, source-water, and biological variables to characterize these landscape positions and analyze relationships to nutrient uptake. Nitrate uptake was undetectable at most lake outlets, whereas PO4-3 uptake was higher at outlets as compared to reference and lake inlet reaches. Patterns in nutrient demand farther downstream were similar to lake outlets with a gradual shift toward reference-reach functionality. Nitrate uptake was most correlated to sediment mobility and channel morphology, whereas PO 4-3 uptake was most correlated to source-water characteristics. The best integrated predictor of these patterns in nutrient demand was % contributing area (the proportion of watershed area not routing through a lake). We estimate that NO3- and PO 4-3 demand returned to 50% of pre-lake conditions within 1-4-km downstream of a small headwater lake and resetting of nutrient demand was slower downstream of a larger lake set lower in a watershed. Full resetting of these nutrient cycling processes was not reached within 20-km downstream, indicating that lakes can alter stream ecosystem functioning at large spatial scales throughout mountain watersheds. ?? 2007, by the American Society of Limnology and Oceanography, Inc.

Limnology and Oceanography

SPCIS: Standardized Plant Community with Introduced Status database

The movement of plant species across the globe exposes native communities to new species introductions. While introductions are pervasive, two aspects of variability underlie patterns and processes of biological invasions at macroecological scales. First, only a portion of introduced species become invaders capable of substantially impacting ecosystems. Second, species that do become invasive at one location may not be invasive in others; impacts depend on invader abundance and recipient species and conditions. Accounting for these phenomena is essential to accurately understand the patterns of plant invasion and explain the idiosyncratic results reflected in the literature on biological invasions. The lack of community-level richness and the abundance of data spanning broad scales and environmental conditions have until now hindered our understanding of invasions at a macroecological scale. To address this limitation, we leveraged quantitative surveys of plant communities in the USA and integrated and harmonized nine datasets into the Standardized Plant Community with Introduced Status (SPCIS) database. The database contains 14,056 unique taxa identified within 83,391 sampling units, of which 52.6% have at least one introduced species. The SPCIS database includes comparable information on plant species occurrence, abundance, and native status across the 50 U.S. States and Puerto Rico. SPCIS can be used to answer macro-scale questions about native plant communities and interactions with invasive plants. There are no copyright restrictions on the data, and we ask the users of this dataset to cite this paper, the respective paper(s) corresponding to the dataset sampling design (all references are provided in Data S1: Metadata S1: Class II-B-2), and the references described in Data S1: Metadata S1: Class III-B-4 as applicable to the dataset being utilized.

Ecology

Using ecological indicators and a decision support system for integrated ecological assessment at two national park units in the Mid-Atlantic region, U.S.A.

We implemented an integrated ecological assessment using a GIS-based decision support system model for Upper Delaware Scenic and Recreational River (UPDE) and Delaware Water Gap National Recreation Area (DEWA)—national park units with the mid-Atlantic region of the United States. Our assessment examined a variety of aquatic and terrestrial indicators of ecosystem components that reflect the parks’ conservation purpose and reference condition. Our assessment compared these indicators to ecological thresholds to determine the condition of park watersheds. Selected indicators included chemical and physical measures of water quality, biologic indicators of water quality, and landscape condition measures. For the chemical and physical measures of water quality, we used a water quality index and each of its nine components to assess the condition of water quality in each watershed. For biologic measures of water quality, we used the Ephemeroptera, Plecoptera, Trichoptera aquatic macroinvertebrate index and, secondarily, the Hilsenhoff aquatic macroinvertebrate index. Finally, for the landscape condition measures of our model, we used percent forest and percent impervious surface. Based on our overall assessment, UPDE and DEWA watersheds had an ecological assessment score of 0.433 on a −1 to 1 fuzzy logic scale. This score indicates that, in general, the natural resource condition within watersheds at these parks is healthy or ecologically unimpaired; however, we had only partial data for many of our indicators. Our model is iterative and new data may be incorporated as they become available. These natural parks are located within a rapidly urbanizing landscape—we recommend that natural resource managers remain vigilant to surrounding land uses that may adversely affect natural resources within the parks.

New Jersey, New York, Pennsylvania

Ants as a measure of effectiveness of habitat conservation planning in southern California

In the United States multispecies habitat conservation plans were meant to be the solution to conflicts between economic development and protection of biological diversity. Although now widely applied, questions exist concerning the scientific credibility of the conservation planning process and effectiveness of the plans. We used ants to assess performance of one of the first regional conservation plans developed in the United States, the Orange County Central‐Coastal Natural Community Conservation Plan (NCCP), in meeting its broader conservation objectives of biodiversity and ecosystem‐level protection. We collected pitfall data on ants for over 3 years on 172 sites established across a network of conservation lands in coastal southern California. Although recovered native ant diversity for the study area was high, site‐occupancy models indicated the invasive and ecologically disruptive Argentine ant ( Linepithema humile ) was present at 29% of sites, and sites located within 200 m of urban and agricultural areas were more likely to have been invaded. Within invaded sites, native ants were largely displaced, and their median species richness declined by more than 60% compared with uninvaded sites. At the time of planning, 24% of the 15,133‐ha reserve system established by Orange County NCCP fell within 200 m of an urban or agricultural edge. With complete build out of lands surrounding the reserve, the proportion of the reserve system vulnerable to invasion will grow to 44%. Our data indicate that simply protecting designated areas from development is not enough. If habitat conservation plans are to fulfill their conservation promise of ecosystem‐level protection, a more‐integrated and systematic approach to the process of habitat conservation planning is needed .

California