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At least 55 records · Page 3Linked to original sources

Total chemical management in photographic processing

The mission of the U. S. Geological Survey's Earth Resources Observation Systems (EROS) Data Center is to produce high-quality photographs of the earth taken from aircraft and Landsat satellite. In order to meet the criteria of producing research-quality photographs, while at the same time meeting strict environmental restrictions, a total photographic chemical management system was installed. This involved a three-part operation consisting of the design of a modern chemical analysis laboratory, the implementation of a chemical regeneration system, and the installation of a waste treatment system, including in-plant pretreatment and outside secondary waste treatment. Over the last ten years the result of this program has yielded high-quality photographs while saving approximately 30,000 per year and meeting all Environmental Protection Agency (EPA) restrictions.

Journal of Imaging Technology↗

Digital to analog conversion and visual evaluation of Thematic Mapper data

As a part of the National Aeronautics and Space Administration Landsat D Image Data Quality Analysis Program, the Earth Resources Observation Systems Data Center (EDC) developed procedures to optimize the visual information content of Thematic Mapper data and evaluate the resulting photographic products by visual interpretation. A digital-to-analog transfer function was developed which would properly place the digital values on the most useable portion of a film response curve. Individual black-and-white transparencies generated using the resulting look-up tables were utilized in the production of color-composite images with varying band combinations. Four experienced photointerpreters ranked 2-cm-diameter (0. 75 inch) chips of selected image features of each band combination for ease of interpretability. A nonparametric rank-order test determined the significance of interpreter preference for the band combinations.

Journal of Imaging Technology↗

Information through color imagery

The color-sensing capability of the human eye is a powerful tool. In remote sensing we should use color to display data more meaningfully, not to re-create the scene. Color disappears with distance, and features change color with viewing angle. Color infrared film lets us apply color with additional meaning even though we introduce a false color response. Although the marginal gray scale on an ERTS (Earth Resources Technology Satellite) image may indicate balance between the green, red, and infrared bands, and although each band may be printed in a primary color, tests show that we are not fully applying the three primary colors. Therefore, contrast in the green band should be raised. For true three-color remote sensing of the Earth, we must find two generally meaningful signatures in the visible spectrum, or perhaps extend our spectral range. Before turning to costly digital processing we should explore analog processing. Most ERTS users deal with relative spectral radiance; the few concerned with absolute radiance could use the computer-compatible tapes or special annotations. NASA (National Aeronautics and Space Administration), which assigns the range and contrast to the ERTS image, controls processing and could adjust the density range for maximum contrast in any ERTS scene. NASA cannot alter processing for local changes in reflective characteristics of the Earth but could adjust for Sun elevation and optimize the contrast in a given band.

Journal of Research of the U.S. Geological Survey↗

Northern Sea Otter (Enhydra lutris kenyoni) population abundance and distribution across the southeast Alaska stock, summer 2022

In the summer of 2022, the U.S. Fish & Wildlife Service and partners successfully completed the first single-year, aerial photo survey of sea otters across the entire Southeast stock of northern sea otters. This document presents the latest findings from the 2022 Southeast Alaska Sea Otter Survey, providing up-to-date information regarding occupancy, abundance and carrying capacity. We collected two independent data streams of sea otter observations during the survey using novel image sensor technologies for marine wildlife surveys and recently developed statistical methods. We calculated an abundance estimate of 22,359 (95% Bayesian credible interval: 19,595, 25,290, CV = 0.064) sea otters. Based on the these results, the population size of the Southeast stock of northern sea otters is still increasing and below the estimated carrying capacity for the region of 48,083 (95% Bayesian credible interval: 40,575, 58,570) sea otters. Results from this report include the first updated abundance estimates for the Southeast stock of sea otters in 10 years, which will help inform stakeholders from across the region and addresses the top priority identified by the 2019 Southeast Sea Otter Stakeholder Working Group.

Alaska↗

AnimalFinder: A semi-automated system for animal detection in time-lapse camera trap images

Although the use of camera traps in wildlife management is well established, technologies to automate image processing have been much slower in development, despite their potential to drastically reduce personnel time and cost required to review photos. We developed AnimalFinder in MATLAB® to identify animal presence in time-lapse camera trap images by comparing individual photos to all images contained within the subset of images (i.e. photos from the same survey and site), with some manual processing required to remove false positives and collect other relevant data (species, sex, etc.). We tested AnimalFinder on a set of camera trap images and compared the presence/absence results with manual-only review with white-tailed deer ( Odocoileus virginianus ), wild pigs ( Sus scrofa ), and raccoons ( Procyon lotor ). We compared abundance estimates, model rankings, and coefficient estimates of detection and abundance for white-tailed deer using N-mixture models. AnimalFinder performance varied depending on a threshold value that affects program sensitivity to frequently occurring pixels in a series of images. Higher threshold values led to fewer false negatives (missed deer images) but increased manual processing time, but even at the highest threshold value, the program reduced the images requiring manual review by ~ 40% and correctly identified > 90% of deer, raccoon, and wild pig images. Estimates of white-tailed deer were similar between AnimalFinder and the manual-only method (~ 1–2 deer difference, depending on the model), as were model rankings and coefficient estimates. Our results show that the program significantly reduced data processing time and may increase efficiency of camera trapping surveys.

Ecological Informatics↗

A geometric performance assessment of the EO-1 advanced land imager

The Earth Observing 1 (EO-1) Advanced Land Imager (ALI) demonstrates technology applicable to a successor system to the Landsat Thematic Mapper series. A study of the geometric performance characteristics of the ALI was conducted under the auspices of the EO-1 Science Validation Team. This study evaluated ALI performance with respect to absolute pointing knowledge, focal plane sensor chip assembly alignment, and band-to-band registration for purposes of comparing this new technology to the heritage Landsat systems. On-orbit geometric calibration procedures were developed that allowed the generation of ALI geometrically corrected products that compare favorably with their Landsat 7 counterparts with respect to absolute geodetic accuracy, internal image geometry, and band registration.

IEEE Transactions on Geoscience and Remote Sensing↗

High-resolution remote sensing of water quality in the San Francisco Bay-Delta Estuary

The San Francisco Bay–Delta Estuary watershed is a major source of freshwater for California and a profoundly human-impacted environment. The water quality monitoring that is critical to the management of this important water resource and ecosystem relies primarily on a system of fixed water-quality monitoring stations, but the limited spatial coverage often hinders understanding. Here, we show how the latest technology in visible/near-infrared imaging spectroscopy can facilitate water quality monitoring in this highly dynamic and heterogeneous system by enabling simultaneous depictions of several water quality indicators at very high spatial resolution. The airborne portable remote imaging spectrometer (PRISM) was used to derive high-spatial-resolution (2.6 × 2.6 m) distributions of turbidity, and dissolved organic carbon (DOC) and chlorophyll-a concentrations in a wetland-influenced region of this estuary. A filter-passing methylmercury vs DOC relationship was also developed using in situ samples and enabled the high-spatial-resolution depiction of surface methylmercury concentrations in this area. The results illustrate how high-resolution imaging spectroscopy can inform management and policy development in important inland and estuarine water bodies by facilitating the detection of point- and nonpoint-source pollution, and by providing data to help assess the complex impacts of wetland restoration and climate change on water quality and ecosystem productivity.

California↗

Morphological development of the Florida Escarpment: Observations on the generation of time transgressive unconformities in carbonate terrains

An unconformity of 100 m.yr magnitude continues to form on the western edge of the Florida-Bahama Platform, near 26??N, where distal Mississippi Fan sediments are progressively burying the Florida Escarpment. Multiple perspectives of the developing unconformity's morphology are revealed using available technologies including GLORIA images of the entire platform's edge, Seabeam bathymetric contours, and Deep-Tow's high resolution side-scan data calibrated with bottom photographs. The structure and stratigraphy of the buried escarpment and the associated unconformity are resolved by airgun, sparker, and Deep-Tow's 4 kHz seismic reflection data; we summarize the morphological data on the exposed part of the unconformity and the sedimentary deposits accumulating in the basin above the unconformity. The exposed cliff face is composed of a staircase of bedding-plane terraces which are developed along joint planes. The terraces extend 100-1000 m along the escarpment's face, and the intervening vertical walls are up to 100 m high. The jointed morphology of this Mesozoic limestone cliff apparently reflects erosional exposure of its interior anatomy rather than its accretionary shape. The change in slope between the platform face and the abyssal plain is very abrupt. In places along the contact between the escarpment and fan sediments, reduced chemical-charged brine seeps occur, which locally cause carbonate dissolution and precipitation, sulfide mineralization, and the deposition of a fossiliferous and organic carbon-rich lens associated with chemosynthetic communities. These seep deposits and escarpment-derived megabreccias intercalate with basinal sediments that overlie the unconformity. Because surface seismic reflection data do not produce images of the escarpment's face that closely reflect the exposed escarpment's morphology, they must also be of limited value in characterizing the surface of similar steeply dipping buried escarpments. Thus, the downslope extent of the heavily eroded platform edge is unclear.

Florida↗

USGS QA Plan: Certification of digital airborne mapping products

To facilitate acceptance of new digital technologies in aerial imaging and mapping, the US Geological Survey (USGS) and its partners have launched a Quality Assurance (QA) Plan for Digital Aerial Imagery. This should provide a foundation for the quality of digital aerial imagery and products. It introduces broader considerations regarding processes employed by aerial flyers in collecting, processing and delivering data, and provides training and information for US producers and users alike.

GIM International↗

Coral disease and health workshop: Coral histopathology II, July 12-14, 2005

The health and continued existence of coral reef ecosystems are threatened by an increasing array of environmental and anthropogenic impacts. Coral disease is one of the prominent causes of increased mortality among reefs globally, particularly in the Caribbean. Although over 40 different coral diseases and syndromes have been reported worldwide, only a few etiological agents have been confirmed; most pathogens remain unknown and the dynamics of disease transmission, pathogenicity and mortality are not understood. Causal relationships have been documented for only a few of the coral diseases, while new syndromes continue to emerge. Extensive field observations by coral biologists have provided substantial documentation of a plethora of new pathologies, but our understanding, however, has been limited to descriptions of gross lesions with names reflecting these observations (e.g., black band, white band, dark spot). To determine etiology, we must equip coral diseases scientists with basic biomedical knowledge and specialized training in areas such as histology, cell biology and pathology. Only through combining descriptive science with mechanistic science and employing the synthesis epizootiology provides will we be able to gain insight into causation and become equipped to handle the pending crisis. One of the critical challenges faced by coral disease researchers is to establish a framework to systematically study coral pathologies drawing from the field of diagnostic medicine and pathology and using generally accepted nomenclature. This process began in April 2004, with a workshop titled Coral Disease and Health Workshop: Developing Diagnostic Criteria co-convened by the Coral Disease and Health Consortium (CDHC), a working group organized under the auspices of the U.S. Coral Reef Task Force, and the International Registry for Coral Pathology (IRCP). The workshop was hosted by the U.S. Geological Survey, National Wildlife Health Center (NWHC) in Madison, Wisconsin and was focused on gross morphology and disease signs observed in the field. A resounding recommendation from the histopathologists participating in the workshop was the urgent need to develop diagnostic criteria that are suitable to move from gross observations to morphological diagnoses based on evaluation of microscopic anatomy. As a continuation of building the foundation and framework for coral disease diagnostics, the CDHC convened the Coral Disease and Health Workshop: Coral Histopathology II in Charleston, South Carolina, July 11-14, 2005. The workshop was hosted by the Department of Pathology and Laboratory Medicine at the Medical University of South Carolina, Charleston, SC which provided expertise, facilities and equipment in support of the workshop. All of the histological slides and related photographs used in the discussions were prepared and supplied by the IRCP. This workshop brought together 15 experts in veterinary and medical pathology and coral biology from national and international research institutes and government laboratories. The mission was to devise a standardized approach to examining microscopic anatomy and pathology of corals and a standardized nomenclature to facilitate accurate descriptions of the microscopic morphology of corals and enhance communication among specialists investigating causes of coral death. 2 The participants of this workshop deliberated for 3 days to refine the nomenclature for gross and microscopic anatomy of corals and systematically described microscopic changes associated with selected coral diseases. The findings and recommendations from the deliberations will be submitted to the research community for peer review. The standardized nomenclature and descriptions produced at this workshop will ultimately be made available to the scientific community through a variety of media including the World Wide Web. An exciting highlight of this meeting was provided by Professor Robert Ogilvie (MUSC Department of Cell Biology and Anatomy) when he introduced participants to a new digital technology that is revolutionizing histology and histopathology in the medical field. The Virtual Slide technology creates digital images of histological tissue sections by computer scanning actual slides in high definition and storing the images for retrieval and viewing. Virtual slides now allow any investigator with access to a computer and the web to view, search, annotate and comment on the same tissue sections in real time. Medical and veterinary slide libraries across the country are being converted into virtual slides to enhance biomedical education, research and diagnosis. The coral health and disease researchers at this workshop deem virtual slides as a significant way to increase capabilities in coral histology and a means for pathology consultations on coral disease cases on a global scale.

NOAA Technical Memorandum↗

Ground control requirements for precision processing of ERTS images

When the first Earth Resources Technology Satellite (ERTS-A) flies in 1972, NASA expects to receive and bulk-process 9,000 images a week. From this deluge of images, a few will be selected for precision processing; that is, about 5 percent will be further treated to improve the geometry of the scene, both in the relative and absolute sense. Control points are required for this processing. This paper describes the control requirements for relating ERTS images to a reference surface of the earth. Enough background on the ERTS-A satellite is included to make the requirements meaningful to the user.

Report↗

Operational shoreline mapping with high spatial resolution radar and geographic processing

A comprehensive mapping technology was developed utilizing standard image processing and available GIS procedures to automate shoreline identification and mapping from 2 m synthetic aperture radar ( SAR ) HH amplitude data. The development used four NASA Uninhabited Aerial Vehicle SAR ( UAVSAR ) data collections between summer 2009 and 2012 and a fall 2012 collection of wetlands dominantly fronted by vegetated shorelines along the Mississippi River Delta that are beset by severe storms, toxic releases, and relative sea-level rise. In comparison to shorelines interpreted from 0.3 m and 1 m orthophotography, the automated GIS 10 m alongshore sampling found SAR shoreline mapping accuracy to be ±2 m, well within the lower range of reported shoreline mapping accuracies. The high comparability was obtained even though water levels differed between the SAR and photography image pairs and included all shorelines regardless of complexity. The SAR mapping technology is highly repeatable and extendable to other SAR instruments with similar operational functionality.

Photogrammetric Engineering and Remote Sensing↗

Fiber-optic sensing for earthquake hazards research, monitoring and early warning

The use of fiber‐optic sensing systems in seismology has exploded in the past decade. Despite an ever‐growing library of ground‐breaking studies, questions remain about the potential of fiber‐optic sensing technologies as tools for advancing if not revolutionizing earthquake‐hazards‐related research, monitoring, and early warning systems. A working group convened to explore these topics; we comprehensively examined the application of fiber optics in various aspects of earthquake hazards, encompassing earthquake source processes, crustal imaging, data archiving, and technological challenges. There is great potential for fiber‐optic systems to advance earthquake monitoring and understanding, but to fully unlock their capabilities requires continued progress in key areas of research and development, including instrument testing and validation, increased dynamic range for applications focused on larger earthquakes, and continued improvement in subsurface and source imaging methods. A key current stumbling block results from the lack of clear data archiving requirements, and we propose an initial strategy that balances data volume requirements with preserving key data for a broad range of future studies. In addition, we demonstrate the potential for fiber‐optic sensing to impact monitoring efforts by documenting the data completeness in a number of long‐term experiments. Finally, we outline the features of a instrument testing facility that would enable progress toward reliable and standardized distributed acoustic sensing data. Overcoming these current obstacles would facilitate progress in fiber‐optic sensing and unlock its potential application to a broad range of earthquake hazard problems.

California, Oregon, Washington↗

An automated and universal method for measuring mean grain size from a digital image of sediment

Existing methods for estimating mean grain size of sediment in an image require either complicated sequences of image processing (filtering, edge detection, segmentation, etc.) or statistical procedures involving calibration. We present a new approach which uses Fourier methods to calculate grain size directly from the image without requiring calibration. Based on analysis of over 450 images, we found the accuracy to be within approximately 16% across the full range from silt to pebbles. Accuracy is comparable to, or better than, existing digital methods. The new method, in conjunction with recent advances in technology for taking appropriate images of sediment in a range of natural environments, promises to revolutionize the logistics and speed at which grain-size data may be obtained from the field.

Conference Paper↗

Green fluorescent protein is lighting up fungal biology

Prasher ( 42 ) cloned a cDNA for the green fluorescent protein (GFP) gene from the jellyfish Aequorea victoria in 1992. Shortly thereafter, to the amazement of many investigators, this gene or derivatives thereof were successfully expressed and conferred fluorescence to bacteria and Caenorhabditis elegans cells in culture ( 10 , 31 ), followed by yeast ( 24 , 39 ), mammals ( 40 ), Drosophila ( 66 ), Dictyostelium ( 23 , 30 ), plants ( 28 , 49 ), and filamentous fungi ( 54 ). The tremendous success of GFP as a reporter can be attributed to unique qualities of this 238-amino-acid, 27-kDa protein which absorbs light at maxima of 395 and 475 nm and emits light at a maximum of 508 nm. The fluorescence of GFP requires only UV or blue light and oxygen, and therefore, unlike the case with other reporters (β-glucuronidase, β-galacturonidase, chloramphenicol acetyltransferase, and firefly luciferase) that rely on cofactors or substrates for activity, in vivo observation of gfp expression is possible with individual cells, with cell populations, or in whole organisms interacting with symbionts or environments in real time. Complications caused by destructive sampling, cell permeablization for substrates, or leakage of products do not occur. Furthermore, the GFP protein is extremely stable in vivo and has been fused to the C or N terminus of many cellular and extracellular proteins without a loss of activity, thereby permitting the tagging of proteins for gene regulation analysis, protein localization, or specific organelle labeling. The mature protein resists many proteases and is stable up to 65°C and at pH 5 to 11, in 1% sodium dodecyl sulfate or 6 M guanidinium chloride (reviewed in references 17 and 67 ), and in tissue fixed with formaldehyde, methanol, or glutaraldehyde. However, GFP loses fluorescence in methanol-acetic acid (3:1) and can be masked by autofluorescent aldehyde groups in tissue fixed with glutaraldehyde. Fluorescence is optimal at pH 7.2 to 8.0 ( 67 ). Limitations on GFP as a reporter for some applications are its low turnover rate, 2-h lag time for autoactivation of its chromophore, improper folding at high temperatures (37°C), which results in nonfluorescent and insoluble forms of the protein, and requirement for oxygen, which is not present in equal concentrations in all subcellular locations or cell types (reviewed in references 17 and 67 ). These characteristics of GFP, however, have not posed a problem for many applications, and mutant forms of GFP that have an ability to fold properly at high temperatures, increased solubility and fluorescence, reduced photobleaching ( 16 , 17 , 51 ), and reduced half-lives ( 1 ) have been developed. Coupled with fluorescence-activated cell sorting, confocal microscopy or quantitative image analysis techniques, GFP technology can be used to isolate transformed cells or specific cell types from populations of cells ( 14 ), to quantify gene expression of individual cells within whole organisms ( 8 ), or to assess the dispersal and biomass of organisms in complex environments, such as in animal or plant hosts ( 38 , 59 ), in biofilms ( 55 ), in fermentors ( 41 ), on leaf surfaces ( 53 , 61 ), or in soils ( 2 ). The vast majority of studies utilizing GFP expression in fungi have been with yeast (reviewed in reference 13 ). Ustilago maydis was the first filamentous fungus for which successful expression of gfp was reported ( 54 ), followed closely by Aspergillus nidulans ( 22 , 57 ) and Aureobasidium pullulans ( 61 ). Presently, gfp expression has been reported for 16 species comprising 12 genera of filamentous fungi, including Colletotrichum ( 21 , 44 ), Mycosphaerella ( 52 ), Magnaporthe ( 32 , 35 ), Cochliobolus ( 38 ), Trichoderma ( 2 , 70 ), Podospora ( 5 ), Sclerotinia ( 63 ), Schizophyllum ( 37 ), Aspergillus ( 20 , 47 , 50 ) and Phytophthora ( 7 , 62 ). In this review we draw on published reports, with the goal of providing an overview of GFP technology as it applies to the biology of filamentous fungi. These reports are not exhaustive of potential applications of GFP technology, as examples of genomic approaches to utilizing GFP in bacterial and yeast systems attest ( 4 , 46 , 60 , 65 ). Expression of gfp in filamentous fungi requires a gfp variant that is efficiently translated in fungi, a transformation system, and a fungal promoter that satisfies the requirements of a given experimental objective. Transformation of fungi has recently been reviewed by Gold et al. ( 26 ). Robinson and Sharon ( 44 ) suggest that GFP can actually be used to optimize transformation protocols. In addition to reporting the construction of a new fungal transformation vector that expresses SGFP under the control of the ToxA gene promoter from Pyrenophora tritici-repentis ( 12 ) and demonstrating its use in plant pathogens belonging to eight different genera of filamentous fungi ( Fusarium, Botrytis, Pyrenophora, Alternaria, Cochliobolus, Sclerotinia, Colletotrichum , and Verticillium ), in this review we also enumerate and describe a comprehensive list of vectors for expressing GFP in fungi.

Applied and Environmental Microbiology↗

Sub-decadal turbidite frequency during the early Holocene: Eel Fan, offshore northern California

Remotely operated and autonomous underwater vehicle technologies were used to image and sample exceptional deep sea outcrops where an ∼100-m-thick section of turbidite beds is exposed on the headwalls of two giant submarine scours on Eel submarine fan, offshore northern California (USA). These outcrops provide a rare opportunity to connect young deep-sea turbidites with their feeder system. 14 C measurements reveal that from 12.8 ka to 7.9 ka, one turbidite was being emplaced on average every 7 yr. This emplacement rate is two to three orders of magnitude higher than observed for turbidites elsewhere along the Pacific margin of North America. The turbidites contain abundant wood and shallow-dwelling foraminifera, demonstrating an efficient connection between the Eel River source and the Eel Fan sink. Turbidite recurrence intervals diminish fivefold to ∼36 yr from 7.9 ka onward, reflecting sea-level rise and re-routing of Eel River sediments.

Geology Today↗