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USGS2015

A hidden view of wildlife conservation: How camera traps aid science, research and management

Florida panthers are among the world’s most endangered — and elusive — animals. For approximately four decades, scientists have been researching this small population of panthers that inhabit the dense forests and swamps of south Florida. Because of their wide habitat range along with an absence of clear visual features, these animals are difficult to detect and identify. In 2013, however, researchers released a study that used camera trap images collected between 2005 and 2007 to generate the first statistically reliable density estimates for the remaining population of this subspecies. Camera traps — remotely activated cameras with infrared sensors — first gained measurable popularity in wildlife conservation in the early 1990s. Today, they’re used for a variety of activities, from species-specific research to broad-scale inventory or monitoring programs that, in some cases, attempt to detect biodiversity across vast landscapes. As this modern tool continues to evolve, it’s worth examining its uses and benefits for wildlife management and conservation.

The Wildlife Professional↗

USGS2007

An Assessment of the Potential Effects of Aquifer Storage and Recovery on Mercury Cycling in South Florida

Mercury contamination in the environment is a global concern, especially in areas with abundant wetlands, such as south Florida. As the causal factors of this concern improve, scientists find that many factors that do not necessarily affect mercury concentrations, such as flooding and drying cycles, or changes to carbon and sulfate loading, can profoundly affect net mercury toxicity. Especially important are ecological factors that alter the conversion of mercury to methylmercury, which is the most bioaccumulative and toxic form of mercury in the environment. Resource managers, therefore, need to be aware of possible deleterious affects to mercury toxicity that could result from land and water management decisions. Several aspects of the Comprehensive Everglades Restoration Plan (CERP), including the planned Aquifer Storage and Recovery (ASR) program, have the potential to affect the abundance of methylmercury. In response to these concerns, the U.S. Geological Survey and U.S. Army Corps of Engineers collaborated on a study to evaluate how the proposed ASR program may affect mercury cycling and toxicity. This project was conducted as an initial assessment of the possible effects of the CERP ASR program on mercury in the south Florida environment. A twofold approach was employed: field sampling and controlled laboratory benchmark experiments. The field sampling survey collected ground-water samples from the Floridan and surficial aquifer systems for the ASR program to determine existing levels of mercury and methylmercury. Laboratory experiments, on the other hand, were designed to determine how the injected surface water would interact with the aquifer during storage periods. Overall, very low levels of mercury and methylmercury (mean values of 0.41 and 0.07 nanograms per liter, respectively) were observed in ground-water samples collected from the Floridan and surficial aquifer systems. These results indicate that 'recovered water' from the CERP ASR program would not represent a significant additional direct load of mercury and methyl-mercury to ASR 'receiving waters'. Net production of methylmercury, however, can result from additions of sulfate or natural organic carbon. Thus, because the Upper Floridan aquifer generally has elevated concentrations of sulfate (relative to ambient Everglades conditions) and surface waters near Lake Okeechobee (the assumed target for ASR receiving waters) are elevated in organic carbon and sulfate, at least some potential for increased methylmercury production might arise from the release of recovered ASR water to locations in or near the Everglades.

Scientific Investigations Report↗

USGS2012

Connectivity of tropical marine ecosystems--An overview of interdisciplinary research to understand biodiversity and trophic relationships in the Virgin Islands and Puerto Rico

The Virgin Islands and Puerto Rico contain marine reserves and protected areas that encompass a variety of tropical ecosystems, including coral reefs, mangroves, and seagrass beds. Reserves and protected areas are established for a variety of reasons, such as preserving nursery habitats and biodiversity, or reducing anthropogenic effects associated with pollution and land use. Questions remain regarding the effectiveness of these designated areas in preserving and protecting spatially connected habitats and associated fishes and invertebrates. Scientists from the U.S. Geological Survey (USGS), University of Florida, and Arkansas State University are collaborating on interdisciplinary research in the Virgin Islands and Puerto Rico to examine the biodiversity and trophic dynamics of fishes and invertebrates residing in connected mangroves, seagrasses, and coral reefs to discern the effectiveness of current marine reserves and protected areas for conserving reef resources.

Fact Sheet↗

USGS2009

Coastal change during Hurricane Dennis 2005

Hurricane Dennis made landfall as a Category 3 storm on Santa Rosa Island in the Florida Panhandle on July 10, 2005. Exposed to some of the strongest winds, Santa Rosa Island suffered erosion, as well as severe overwash. A storm surge of 2 m was recorded near Navarre Beach. The U.S. Geological Survey (USGS) and U.S. Army Corps of Engineers (USACE) are collaborating in a research project investigating coastal change that occurred as a result of Hurricane Dennis. The USGS acquired still oblique aerial photography both before and after hurricane landfall to better understand the impacts of extreme storms on coastal environments. On Tuesday, July 12, 2005, scientists conducted an aerial photographic survey of Santa Rosa Island, Florida, that was impacted by Hurricane Dennis. The photographs were compared to pre-Dennis photographs taken in July 2001 and after the landfall of Hurricane Ivan in September 2004 to illustrate extreme coastal change. On Santa Rosa Island, the storm eroded dunes and beaches, and overwashed roads. In Navarre Beach, parking lots and roads were covered with sand and dune walkovers damaged or destroyed.

Florida↗

USGS2015

The Centennial Trends Greater Horn of Africa precipitation dataset

East Africa is a drought prone, food and water insecure region with a highly variable climate. This complexity makes rainfall estimation challenging, and this challenge is compounded by low rain gauge densities and inhomogeneous monitoring networks. The dearth of observations is particularly problematic over the past decade, since the number of records in globally accessible archives has fallen precipitously. This lack of data coincides with an increasing scientific and humanitarian need to place recent seasonal and multi-annual East African precipitation extremes in a deep historic context. To serve this need, scientists from the UC Santa Barbara Climate Hazards Group and Florida State University have pooled their station archives and expertise to produce a high quality gridded ‘Centennial Trends’ precipitation dataset. Additional observations have been acquired from the national meteorological agencies and augmented with data provided by other universities. Extensive quality control of the data was carried out and seasonal anomalies interpolated using kriging. This paper documents the CenTrends methodology and data.

Scientific Data↗

USGS2006

Relationships between reef fish communities and remotely sensed rugosity measurements in Biscayne National Park, Florida, USA

The realization that coral reef ecosystem management must occur across multiple spatial scales and habitat types has led scientists and resource managers to seek variables that are easily measured over large areas and correlate well with reef resources. Here we investigate the utility of new technology in airborne laser surveying (NASA Experimental Advanced Airborne Research Lidar (EAARL)) in assessing topographical complexity (rugosity) to predict reef fish community structure on shallow (<10 m deep) patch reefs. Marine portions of Biscayne National Park, Florida, USA, were surveyed remotely using the EAARL, and reef fish populations were visually surveyed on 10 patch reefs at independent, randomly selected stations ( n = 10–13 per reef). Rugosity at each station was assessed in situ by divers using the traditional chain-transect method (10-m scale), and remotely using the EAARL submarine topography data at multiple spatial scales (2, 5, and 10 m). The rugosity and biological datasets were analyzed together to elucidate the predictive power of EAARL rugosity in describing the variance in reef fish community variables and to assess the correlation between chain-transect and EAARL rugosity. EAARL rugosity was not well correlated with chain-transect rugosity, or with species richness of fishes (although statistically significant, the amount of variance explained by the model was very low). Variance in reef fish community attributes was better explained in reef-by-reef variability than by physical variables. However, once the reef-by-reef variability was taken into account in a two-way analysis of variance, the importance of rugosity could be seen on individual reefs. Fish species richness and abundance were statistically higher at high rugosity stations compared to medium and low rugosity stations, as predicted by prior ecological research. The EAARL shows promise as an important mapping tool for reef resource managers as they strive to inventory and protect coral reef resources.

Florida↗

USGS1996

South Florida wetlands ecosystem; biogeochemical processes in peat

The South Florida wetlands ecosystem is an environment of great size and ecological diversity (figs. 1 and 2). The landscape diversity and subtropical setting of this ecosystem provide a habitat for an abundance of plants and wildlife, some of which are unique to South Florida. South Florida wetlands are currently in crisis, however, due to the combined effects of agriculture, urbanization, and nearly 100 years of water management. Serious problems facing this ecosystem include (1) phosphorus contamination producing nutrient enrichment, which is causing changes in the native vegetation, (2) methylmercury contamination of fish and other wildlife, which poses a potential threat to human health, (3) changes in the natural flow of water in the region, resulting in more frequent drying of wetlands, loss of organic soils, and a reduction in freshwater flow to Florida Bay, (4) hypersalinity, massive algal blooms, and seagrass loss in parts of Florida Bay, and (5) a decrease in wildlife populations, especially those of wading birds. This U.S. Geological Survey (USGS) project focuses on the role of organic-rich sediments (peat) of South Florida wetlands in regulating the concentrations and impact of important chemical species in the environment. The cycling of carbon, nitrogen, phosphorus, and sulfur in peat is an important factor in the regulation of water quality in the South Florida wetlands ecosystem. These elements are central to many of the contamination issues facing South Florida wetlands, such as nutrient enrichment, mercury toxicity, and loss of peat. Many important chemical and biological reactions occur in peat and control the fate of chemical species in wetlands. Wetland scientists often refer to these reactions as biogeochemical processes, because they are chemical reactions usually mediated by microorganisms in a geological environment. An understanding of the biogeochemical processes in peat of South Florida wetlands will provide a basis for evaluating the effects on water quality of (1) constructing buffer wetlands to alleviate nutrient contamination and (2) replumbing the ecosystem to restore natural water flow. The results may also suggest new approaches for solving problems of contamination and water quality in these wetlands. A second focus of this project will be on the geochemical history of the South Florida ecosystem. Peat is a repository of the history of past environmental conditions in the wetland. Before effective action can be taken to correct many of the problems facing these wetlands, we must first study the biogeochemistry of the peat at depth in order to understand whether current problems are the result of recent human activity or are part of a long-term natural cycle. Coordination with other (USGS) projects for South Florida is ongoing. These projects are studying the biological history of the ecosystem by using pollen and shells buried in the peat, together with procedures for dating the peat at various depths, to develop an overall ecosystem history model, with emphasis on the last 100 years.

Fact Sheet↗

USGS2016

Coastal bathymetry data collected in June 2014 from Fire Island, New York—The wilderness breach and shoreface

Scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, collected bathymetric data along the upper shoreface and within the wilderness breach at Fire Island, New York, in June 2014. The U.S. Geological Survey is involved in a post-Hurricane Sandy effort to map and monitor the morphologic evolution of the shoreface along Fire Island and model the evolution of the wilderness breach as a part of the Hurricane Sandy Supplemental Project GS2-2B. During this study, bathymetry was collected with single-beam echo sounders and global positioning systems, mounted to personal watercraft, along the Fire Island shoreface and within the wilderness breach. Additional bathymetry was collected using backpack global positioning systems along the flood shoals and shallow channels within the wilderness breach.

New York↗

USGS2017

Bathymetry data collected in October 2014 from Fire Island, New York—The wilderness breach, shoreface, and bay

Scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, conducted a bathymetric survey of Fire Island, New York, from October 5 to 10, 2014. The U.S. Geological Survey is involved in a post-Hurricane Sandy effort to map and monitor the morphologic evolution of the wilderness breach, which formed in October 2012 during Hurricane Sandy, as part of the Hurricane Sandy Supplemental Project GS2-2B. During this study, bathymetry data were collected, using single-beam echo sounders and global positioning systems mounted to personal watercraft, along the Fire Island shoreface and within the wilderness breach, Fire Island Inlet, Narrow Bay, and Great South Bay east of Nicoll Bay. Additional bathymetry and elevation data were collected using backpack and wheel-mounted global positioning systems along the subaerial beach (foreshore and backshore), flood shoals, and shallow channels within the wilderness breach and adjacent shoreface.

New York↗

USGS2013

Florida Panhandle

Florida↗

USGS2017

Coastal bathymetry data collected in May 2015 from Fire Island, New York—Wilderness breach and shoreface

Scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, conducted a bathymetric survey of Fire Island from May 6-20, 2015. The USGS is involved in a post-Hurricane Sandy effort to map and monitor the morphologic evolution of the wilderness breach as a part of the Hurricane Sandy Supplemental Project GS2-2B. During this study, bathymetry data were collected with single-beam echo sounders and Global Positioning Systems, which were mounted to personal watercraft, along the Fire Island shoreface and within the wilderness breach. Additional bathymetry and elevation data were collected using backpack Global Positioning Systems on flood shoals and in shallow channels within the wilderness breach.

New York↗

USGS2001

The tides and inflows in the mangroves of the Everglades (TIME) interdisciplinary project of the South Florida Ecosystem Program

The U. S. Geological Survey (USGS) has a prominent role in the Federal Government's comprehensive restoration plan for the south Florida ecosystem encompassing the Everglades-the largest remaining subtropical wilderness in the continental United States. USGS scientists, in collaboration with researchers from the National Park Service (NPS), other governmental agencies, and academia, are providing scientific information to land and resource managers for planning, executing, and evaluating restoration actions. One major thrust of the restoration effort is to restore the natural functioning of the ecosystem to predrainage conditions, an objective that requires knowledge of the hydrologic and hydraulic factors that affect the flow of water. A vast network of interlaced canals, rimmed with levees and fitted with hydraulic control structures, and highways, built on elevated embankments lined by borrow ditches and undercut by culverts, now act to control and direct the flow of water through the shallow low-gradient wetlands. As water flows south from Lake Okeechobee past the city of Miami and through Everglades National Park (ENP), it is diminished by canal diversions, augmented by seasonably variable precipitation, and depleted through evapotranspiration. Along its path, the shallow flowing water, referred to as sheet flow, interacts with surficial aquifers and is subject to the resistance effects of variably dense vegetation and forcing effects of winds. New scientific investigations are providing additional insight into the hydrologic and hydraulic processes governing the flow, and recent data-collection efforts are supplying more comprehensive data describing the flow behavior, both of which are benefiting development of improved numerical models to evaluate and restore the natural functioning of the ecosystem.

Florida↗

USGS2017

Deepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico

The deep sea is a rich environment composed of diverse habitat types. While deep-sea coral habitats have been discovered within each ocean basin, knowledge about the ecology of these habitats and associated inhabitants continues to grow. This report presents information and results from the Lophelia II project that examined deep-sea coral habitats in the Gulf of Mexico. The Lophelia II project focused on Lophelia pertusa habitats along the continental slope, at depths ranging from 300 to 1,000 meters. The chapters are authored by several scientists from the U.S. Geological Survey, National Oceanic and Atmospheric Administration, University of North Carolina Wilmington, and Florida State University who examined the community ecology (from microbes to fishes), deep-sea coral age, growth, and reproduction, and population connectivity of deep-sea corals and inhabitants. Data from these studies are presented in the chapters and appendixes of the report as well as in journal publications. This study was conducted by the Ecosystems Mission Area of the U.S. Geological Survey to meet information needs identified by the Bureau of Ocean Energy Management.

Gulf of Mexico↗

USGS2013

Statewide summary for Florida

Throughout the past century, emergent wetlands have been declining across the Gulf of Mexico. Emergent wetland ecosystems provide a multitude of resources, including plant and wildlife habitat, commercial and recreational economic activity, and natural barriers against storms. As emergent wetland losses increase, so does the need for information on the causes and effects of this loss; emergent wetland mapping, monitoring, and restoration efforts; and education. This report provides scientists, managers, and citizens with valuable baseline information on the status and trends of emergent wetlands along the coast of the Gulf of Mexico. The Statewide Summary for Florida provides status and trends information for Florida using what data is available during the 1950-2010 time period. The State of Florida (Figure 1) is approximately 151,670 km2 (58,560 mi2 ) large with an average elevation of 30.5 m (100 ft) (Dahl, 2005). The Florida gulf coast stretches approximately 1,000 km (621 miles) from the Alabama State line to the Dry Tortugas in the Florida Keys (Handley et al., 2007). The climate varies along the coast, ranging from temperate continental in the panhandle to oceanic subtropical in the Keys. Due to this climatic gradient, the Gulf coast of Florida is divisible into two ecoregions, the Louisianian in the north along the panhandle, and the West Indian in the south along the length of the peninsula (Bailey 1978). The Lousianian ecoregion extends from Cedar Key north and west along the panhandle to the Alabama state line. It is characterized by extensive emergent coastal wetlands, temperate fauna, small tidal ranges (

Florida↗

USGS2017

The role of paleoecology in restoration and resource management—The past as a guide to future decision-making: Review and example from the Greater Everglades Ecosystem, U.S.A

Resource managers around the world are challenged to develop feasible plans for sustainable conservation and/or restoration of the lands, waters, and wildlife they administer—a challenge made greater by anticipated climate change and associated effects over the next century. Increasingly, paleoecologic and geologic archives are being used to extend the period of record of observed data and provide information on centennial to millennial scale responses to long-term drivers of ecosystem change. The development of paleoecology from an emerging field investigating past environments to a highly relevant applied science is reviewed and general examples of the application of paleoecologic research to resource management questions in diverse habitats and regions are provided. Specific examples of the application of paleoecologic research to the restoration of the Greater Everglades Ecosystem of south Florida (U.S.A) are presented. Conducting valuable scientific research that would benefit resource management decisions, however, is not enough. Scientists and resource managers need to be engaged in collaborative discussions from the beginning of the research process to ensure that management questions are being addressed and that the science reaches the people who will benefit from the information. Paleoecology and related disciplines provide an understanding of how ecosystems and individual species function and change over time in response to both natural and anthropogenic drivers. Information on pre-anthropogenic baseline conditions is provided by paleoecologic research, but it is the detection of long-term trends and cycles that allow resource managers to set realistic goals and targets by moving away from the fixed-point baseline concept to one of dynamic landscapes that anticipates and incorporates an expectation of change into decision-making.

Florida↗

USGS2009

EAARL Coastal Topography - Northern Gulf of Mexico, 2007: First surface

These remotely sensed, geographically referenced elevation measurements of Lidar-derived first surface (FS) elevation data were produced as a collaborative effort between the U.S. Geological Survey (USGS), Florida Integrated Science Center (FISC), St. Petersburg, FL; the National Park Service (NPS), Gulf Coast Network, Lafayette, LA; and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. The project provides highly detailed and accurate datasets of select barrier islands and peninsular regions of Louisiana, Mississippi, Alabama, and Florida, acquired June 27-30, 2007. The datasets are made available for use as a management tool to research scientists and natural resource managers. An innovative airborne Lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) Lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive Lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multi-spectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit which provide for submeter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a Lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of Lidar data in an interactive or batch mode. Modules for presurvey flight line definition, flight path plotting, Lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations.

Alabama, Mississippi↗

USGS2022

Natives bite back! Are Burmese pythons beginning to encounter the resilience of the Everglades Ecosystem?

Burmese pythons ( Python bivittatus ) is a large, invasive reptile known in Florida for its devastating impacts on native species in the Greater Everglades Ecosystem. Several organizations and individuals are taking action to research and/or remove the snakes, including the U.S. Geological Survey (USGS). Since 2018, scientists from USGS’s Fort Collins Science Center have been working closely with the National Park Service (NPS) in Big Cypress National Preserve to use radiotelemetry and track Burmese pythons for various ecological research project and management (enabled by invaluable partnerships with the University of Florida and Zoo Miami). Over those years, we have encountered some incidental, but intriguing findings.

Florida↗

USGS2009

EAARL coastal topography — Northern Gulf of Mexico, 2007: Bare earth

These remotely sensed, geographically referenced elevation measurements of Lidar -derived bare earth ( BE ) topography were produced as a collaborative effort between the U.S. Geological Survey ( USGS ), Florida Integrated Science Center ( FISC ), St. Petersburg, FL ; the National Park Service ( NPS ), Gulf Coast Network, Lafayette, LA ; and the National Aeronautics and Space Administration ( NASA ), Wallops Flight Facility, VA . The purpose of this project is to provide highly detailed and accurate datasets of select barrier islands and peninsular regions of Louisiana, Mississippi, Alabama, and Florida, acquired on June 27-30, 2007. The datasets are made available for use as a management tool to research scientists and natural resource managers. An innovative airborne Lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar ( EAARL ), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) Lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive Lidar , a down-looking red-green-blue ( RGB ) digital camera, a high-resolution multi-spectral color infrared ( CIR ) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit which provide for submeter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a Lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system and the resulting data were then processed using the Airborne Lidar Processing System ( ALPS ), a custom-built processing system developed in a NASA - USGS collaboration. ALPS supports the exploration and processing of Lidar data in an interactive or batch mode. Modules for presurvey flight line definition, flight path plotting, Lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations.

northern Gulf of Mexico↗