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At least 55 records · Page 3Linked to original sources
USGS2020

FiCli, the Fish and Climate Change Database, informs climate adaptation and management for freshwater fishes

Inland fishes provide important ecosystem services to communities worldwide and are especially vulnerable to the impacts of climate change. Fish respond to climate change in diverse and nuanced ways, which creates challenges for practitioners of fish conservation, climate change adaptation, and management. Although climate change is known to affect fish globally, a comprehensive online, public database of how climate change has impacted inland fishes worldwide and adaptation or management practices that may address these impacts does not exist. We conducted an extensive, systematic primary literature review to identify peer-reviewed journal publications describing projected and documented examples of climate change impacts on inland fishes. From this standardized Fi sh and Cli mate Change database, FiCli (pronounced fick-lee), researchers and managers can query fish families, species, response types, or geographic locations to obtain summary information on inland fish responses to climate change and recommended management actions. The FiCli database is updatable and provides access to comprehensive published information to inform inland fish conservation and adaptation planning in a changing climate.

Scientific Data↗
USGS2023

Fishes of Harney Basin revisited: An assessment of the distribution of native and nonnative fishes over a half century

The Harney Basin is Oregon's largest internally draining basin and contains a unique native fish assemblage. The first and only comprehensive study of the origin and distribution of Harney Basin fishes occurred in 1971. Here, we update this study and identify potential threats to the basin's native fishes a half century later. Our assessment documents that all species of native fishes are still present, and with some exceptions distributed as originally reported. The distinctive fish assemblages in each of the 3 major subbasins within the Harney Basin (Silvies River, Silver Creek, and Donner und Blitzen River) support the hypothesis that terminal lakes in the Harney Basin (Malheur, Mud, and Harney Lakes) act as dispersal barriers, at least for native species. More than half of the fish species in the basin at present are introduced, primarily inhabiting low-elevation sites. We suggest that native non-salmonid species cohabiting these sites face the most immediate threats from climate change, water demands, and impacts from introduced fishes. Overall, our results show that native fish are still relatively widespread across the Harney Basin, but also face increasing threats despite the basin having experienced less development than many other areas in the Pacific Northwest. Improved understanding of the unique fishes of the Harney Basin, along with more detailed assessments of likely future trajectories of environmental risks are proactive measures that could improve conservation outcomes.

Oregon↗
USGS2006

Estimating the size of fish consumed by double-crested cormorants: Considerations for better understanding cormorant-fish interactions

We measured 926 smallmouth bass ( Micropterus dolomieu ), 6,935 yellow perch ( Perca flavescens ), 6,416 rock bass ( Ambloplites rupestris ), and 4,852 pumpkinseed ( Lepomis gibbosus ) otoliths recovered from double-crested cormorant ( Phalacrocorax auritus ) pellets to determine the sizes (total lengths) of these fish consumed by cormorants. Otoliths were recovered from cormorant pellets collected from 1993 to 2002 at six colonies along the eastern Lake Ontario–St. Lawrence River corridor. Otolith –length fish length regressions were used to estimate the length of fish species consumed by cormorants. Only 1.5% of these otoliths had no visible erosion, 33.3% had minor erosion, and 65.2% had moderate erosion. We found that the exclusive use of uneroded otoliths severely limited the sample size available for estimating fish size and likely would cause an overestimation of fish size. Species-specific differences were evident when using erosion criteria to determine fish size and could result in bias when estimating length, especially for species such as smallmouth bass whose otoliths possess a rostrum that is readily eroded. Using a random sample (n = 100) of all intact otoliths recovered in pellets provided a conservative estimate of fish length that was smaller than that derived from uneroded or minimally eroded otoliths. Annual variation in the size of fish consumed by cormorants was more pronounced than seasonal variation for most species. We describe and recommend a new technique that incorporates both chick regurgitant and pellet samples for estimating the size of fish consumed by cormorants.

Journal of Great Lakes Research↗
USGS2016

A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

Environmental Monitoring and Assessment↗
USGS2016

Selenium: Mercury molar ratios in freshwater fish in the Columbia River Basin: Potential applications for specific fish consumption advisories

Fish provide a valuable source of beneficial nutrients and are an excellent source of low fat protein. However, fish are also the primary source of methylmercury exposure in humans. Selenium often co-occurs with mercury and there is some evidence that selenium can protect against mercury toxicity yet States issue fish consumption advisories based solely on the risks that methylmercury pose to human health. Recently, it has been suggested the selenium: mercury molar ratio be considered in risk management. In order for agencies to utilize the ratio to set consumption guidelines, it is important to evaluate the variability in selenium and mercury in different fish species. We examined 10 different freshwater fish species found within the Columbia River Basin in order to determine the inter- and intra-specific variability in the selenium: mercury molar ratios and the selenium health benefit values. We found significant variation in selenium: mercury molar ratios. The mean molar ratios for each species were all above 1:1, ranging from 3.42:1 in Walleye to 27.2:1 in Chinook salmon. There was a positive correlation between both mercury and selenium with length for each fish species apart from yellow perch and rainbow trout. All species had health benefit values greater than 2. We observed considerable variability in selenium: mercury molar ratios within fish species collected in the Columbia River Basin. Although incorporating selenium: mercury molar ratios into fish consumption holds the potential for refining advisories and assessing the risk of methylmercury exposure, the current understanding of how these ratios apply is insufficient, and further understanding of drivers of variability in the ratios is needed.

Biological Trace Element Research↗
USGS2025

The National Fish Habitat Partnership – A unique path to conserving fish habitat

The National Fish Habitat Partnership (NFHP) is a science based, non-regulatory, partnership-driven effort to conserve fish habitat across the USA. The NFHP was developed in the early to mid-2000s in response to the noted declines to fish populations and their associated habitats across the USA with the effort led by the Association of Fish and Wildlife Agencies and supported by a wide range of federal and state fisheries agencies along with conservation organizations. Since 2006, 20 Fish Habitat Partnerships have been organized around specific habitats, fish species, or geographic areas. These partnerships have implemented 1,613 projects resulting in 9,720 habitat enhancements or parcels of habitat protected, including 7,962 riverine or coastline miles and 98,255 acres of marine, lake, impoundment, and reservoir fish habitat along with 1,499 science and data products using US$60,613,842 of direct NFHP investment matched or leveraged by $332,841,072. The NFHP was codified by the U.S. Congress in 2020 and reauthorized in 2024, building on the strong initial foundation and ensuring success into the future. Follow-up publications to this overview paper are planned by each Fish Habitat Partnership to fully describe the depth and breadth of this key U.S. habitat program.

Fisheries↗
USGS2010

Fishing out marine parasites? Impacts of fishing on rates of parasitism in the ocean

Among anthropogenic effects on the ocean, fishing is one of the most pervasive and extends deepest into the past. Because fishing reduces the density of fish (reducing transmission efficiency of directly transmitted parasites), selectively removes large fish (which tend to carry more parasites than small fish), and reduces food web complexity (reducing transmission efficiency of trophically transmitted parasites), the removal of fish from the world’s oceans over the course of hundreds of years may be driving a long-term, global decline in fish parasites. There has been growing recognition in recent years that parasites are a critical part of biodiversity and that their loss could substantially alter ecosystem function. Such a loss may be among the last major ecological effects of industrial fishing to be recognized by scientists.

Ecology Letters↗
USGS2015

Dynamic hypoxic zones in Lake Erie compress fish habitat, altering vulnerability to fishing gears

Seasonal degradation of aquatic habitats from hypoxia occurs in numerous freshwater and coastal marine systems and can result in direct mortality or displacement of fish. Yet, fishery landings from these systems are frequently unresponsive to changes in the severity and extent of hypoxia, and population-scale effects have been difficult to measure except in extreme hypoxic conditions with hypoxia-sensitive species. We investigated fine-scale temporal and spatial variability in dissolved oxygen in Lake Erie as it related to fish distribution and catch efficiencies of both active (bottom trawls) and passive (trap nets) fishing gears. Temperature and dissolved oxygen loggers placed near the edge of the hypolimnion exhibited much higher than expected variability. Hypoxic episodes of variable durations were frequently punctuated by periods of normoxia, consistent with high-frequency internal waves. High-resolution interpolations of water quality and hydroacoustic surveys suggest that fish habitat is compressed during hypoxic episodes, resulting in higher fish densities near the edges of hypoxia. At fixed locations with passive commercial fishing gear, catches with the highest values occurred when bottom waters were hypoxic for intermediate proportions of time. Proximity to hypoxia explained significant variation in bottom trawl catches, with higher catch rates near the edge of hypoxia. These results emphasize how hypoxia may elevate catch rates in various types of fishing gears, leading to a lack of association between indices of hypoxia and fishery landings. Increased catch rates of fish at the edges of hypoxia have important implications for stock assessment models that assume catchability is spatially homogeneous.

Ohio↗
USGS2012

Inability to demonstrate fish-to-fish transmission of Ichthyophonus from laboratory infected Pacific herring Clupea pallasii to naïve conspecifics

The parasite Ichthyophonus is enzootic in many marine fish populations of the northern Atlantic and Pacific Oceans. Forage fishes are a likely source of infection for higher trophic level predators; however, the processes that maintain Ichthyophonus in forage fish populations (primarily clupeids) are not well understood. Lack of an identified intermediate host has led to the convenient hypothesis that the parasite can be maintained within populations of schooling fishes by waterborne fish-to-fish transmission. To test this hypothesis we established Ichthyophonus infections in Age-1 and young-of-the-year (YOY) Pacific herring Clupea pallasii (Valenciennes) via intraperitoneal (IP) injection and cohabitated these donors with naïve conspecifics (sentinels) in the laboratory. IP injections established infection in 75 to 84% of donor herring, and this exposure led to clinical disease and mortality in the YOY cohort. However, after cohabitation for 113 d no infections were detected in naïve sentinels. These data do not preclude the possibility of fish-to-fish transmission, but they do suggest that other transmission processes are necessary to maintain Ichthyophonus in wild Pacific herring populations.

Diseases of Aquatic Organisms↗
USGS2011

Factors controlling the early stages of viral haemorrhagic septicaemia epizootics: Low exposure levels, virus amplification and fish-to-fish transmission

Viral haemorrhagic septicaemia virus, Genogroup IVa (VHSV), was highly infectious to Pacific herring, Clupea pallasii (Valenciennes), even at exposure doses occurring below the threshold of sensitivity for a standard viral plaque assay; however, further progression of the disease to a population‐level epizootic required viral amplification and effective fish‐to‐fish transmission. Among groups of herring injected with VHSV, the prevalence of infection was dose‐dependent, ranging from 100%, 75% and 38% after exposure to 19, 0.7 and 0.07 plaque‐forming units (PFU)/fish, respectively. Among Pacific herring exposed to waterborne VHSV (140 PFU mL −1 ), the prevalence of infection, geometric mean viral tissue titre and cumulative mortality were greater among cohabitated herring than among cohorts that were held in individual aquaria, where fish‐to‐fish transmission was prevented. Fish‐to‐fish transmission among cohabitated herring probably occurred via exposure to shed virus which peaked at 680 PFU mL −1 ; shed virus was not detected in the tank water from any isolated individuals. The results provide insights into mechanisms that initiate epizootic cascades in populations of wild herring and have implications for the design of VHSV surveys in wild fish populations.

Journal of Fish Diseases↗
USGS2021

Exploration of the 2016 Yellowstone River fish kill and proliferative kidney disease in wild fish populations

Proliferative kidney disease (PKD) is an emerging disease that recently resulted in a large mortality event of salmonids in the Yellowstone River (Montana, USA). Total PKD fish mortalities in the Yellowstone River were estimated in the tens of thousands, which resulted in a multi‐week river closure and an estimated economic loss of US$500,000. This event shocked scientists, managers, and the public, as this was the first occurrence of the disease in the Yellowstone River, the only reported occurrence of the disease in Montana in the past 25 yr, and arguably the largest wild PKD fish kill in the world. To understand why the Yellowstone River fish kill occurred, we used molecular and historical data to evaluate evidence for several hypotheses: Was the causative parasite Tetracapsuloides bryosalmonae a novel invader, was the fish kill associated with a unique parasite strain, and/or was the outbreak caused by unprecedented environmental conditions? We found that T. bryosalmonae is widely distributed in Montana and have documented occurrence of this parasite in archived fish collected in the Yellowstone River prior to the fish kill. T. bryosalmonae had minimal phylogeographic population structure, as the DNA of parasites sampled from the Yellowstone River and distant water bodies were very similar. These results suggest that T. bryosalmonae could be endemic in Montana. Due to data limitations, we could not reject the hypothesis that the fish kill was caused by a novel and more virulent genetic strain of the parasite. Finally, we found that single‐year environmental conditions are insufficient to explain the cause of the 2016 Yellowstone River PKD outbreak. Other regional rivers where we documented T. bryosalmonae had similar or even more extreme conditions than the Yellowstone River and similar or more extreme conditions have occurred in the Yellowstone River in the recent past, yet mass PKD mortalities have not been documented in either instance. We conclude by placing these results and unresolved hypotheses into the broader context of international research on T. bryosalmonae and PKD, which strongly suggests that a better understanding of bryozoans, the primary host of T. bryosalmonae , is required for better ecosystem understanding.

Montana↗
USGS2011

Ascent of neotropical migratory fish in the Itaipu Reservoir fish pass

The Piracema Canal is a complex 10-km fish pass system that climbs 120m to connect the Paran?? River to the Itaipu Reservoir along the Brazil-Paraguay border. The canal was constructed to allow migratory fishes to reach suitable habitats for reproduction and feeding in tributaries upstream from the reservoir. The Piracema Canal attracted 17 of the 19 long-distance migratory species that have been recorded in the Paran?? River Basin and Paraguay-Paran?? Basin. However, the incidence of migratory fish decreased from downstream to upstream, with the pattern of decrease depending on species. Overall, 0.5% of the migratory fish that entered the Piracema Canal and segment 1, eventually were able to reach segment 5 and potentially Itaipu Reservoir. Ascension rate was examined relative to various physical attributes of canal segments; maximum water velocity emerged as the most influential variable affecting fish passage. Water velocity may be manipulated by controlling water discharge, and by re-engineering critical sections of the canal. Because the Itaipu Reservoir flooded a set of falls that separated two distinct biogeographical regions, facilitating fish movements through the Piracema Canal into the Itaipu Reservoir presents a management dilemma that requires deliberation in the context of the fish assemblages rather than on selected migratory species. ?? 2010 John Wiley & Sons, Ltd.

River Research and Applications↗
USGS2011

Distribution and habitat use of the Missouri River and Lower Yellowstone River benthic fishes from 1996 to 1998: A baseline for fish community recovery

Past and present Missouri River management practices have resulted in native fishes being identified as in jeopardy. In 1995, the Missouri River Benthic Fishes Study was initiated to provide improved information on Missouri River fish populations and how alterations might affect them. The study produced a baseline against which to evaluate future changes in Missouri River operating criteria. The objective was to evaluate population structure and habitat use of benthic fishes along the entire mainstem Missouri River, exclusive of reservoirs. Here we use the data from this study to provide a recent-past baseline for on-going Missouri River fish population monitoring programmes along with a more powerful method for analysing data containing large percentages of zero values. This is carried out by describing the distribution and habitat use of 21 species of Missouri River benthic fishes based on catch-per-unit area data from multiple gears. We employ a Bayesian zero-inflated Poisson model expanded to include continuous measures of habitat quality (i.e. substrate composition, depth, velocity, temperature, turbidity and conductivity). Along with presenting the method, we provide a relatively complete picture of the Missouri River benthic fish community and the relationship between their relative population numbers and habitat conditions. We demonstrate that our single model provides all the information that is often obtained by a myriad of analytical techniques. An important advantage of the present approach is reliable inference for patterns of relative abundance using multiple gears without using gear efficiencies.

River Research and Applications↗
USGS2014

Do management actions to restore rare habitat benefit native fish conservation? Distribution of juvenile native fish among shoreline habitats of the Colorado River

Many management actions in aquatic ecosystems are directed at restoring or improving specific habitats to benefit fish populations. In the Grand Canyon reach of the Colorado River, experimental flow operations as part of the Glen Canyon Dam Adaptive Management Program have been designed to restore sandbars and associated backwater habitats. Backwaters can have warmer water temperatures than other habitats, and native fish, including the federally endangered humpback chub Gila cypha , are frequently observed in backwaters, leading to a common perception that this habitat is critical for juvenile native fish conservation. However, it is unknown how fish densities in backwaters compare with that in other habitats or what proportion of juvenile fish populations reside in backwaters. Here, we develop and fit multi-species hierarchical models to estimate habitat-specific abundances and densities of juvenile humpback chub, bluehead sucker Catostomus discobolus , flannelmouth sucker Catostomus latipinnis and speckled dace Rhinichthys osculus in a portion of the Colorado River. Densities of all four native fish were greatest in backwater habitats in 2009 and 2010. However, backwaters are rare and ephemeral habitats, so they contain only a small portion of the overall population. For example, the total abundance of juvenile humpback chub in this study was much higher in talus than in backwater habitats. Moreover, when we extrapolated relative densities based on estimates of backwater prevalence directly after a controlled flood, the majority of juvenile humpback chub were still found outside of backwaters. This suggests that the role of controlled floods in influencing native fish population trends may be limited in this section of the Colorado River.

Arizona↗
USGS2008

Reef fishes have higher parasite richness at unfished Palmyra Atoll compared to fished Kiritimati Island

We compared parasite communities at two coral atolls in the Line Islands chain of the central Pacific (Kiritimati Island and Palmyra Atoll). Palmyra Atoll is relatively pristine while Kiritimati Island is heavily fished. At each island, we sampled five fish species for helminth and arthropod endoparasites: Chromis margaritifer , Plectroglyphidodon dickii, Paracirrhites arcatus , Acanthurus nigricans , and Lutjanus bohar . The surveys found monogeneans, digeneans, cestodes, nematodes, acanthocephalans, and copepods. Parasite richness was higher at Palmyra compared to Kiritimati for all five fish species. Fishes from Palmyra also tended to have more parasites species per host, higher parasite prevalence, and higher parasite abundance than did fishes from Kiritimati. The lower parasitism at Kiritimati may result from a simplified food web due to over fishing. Low biodiversity could impair parasite transmission by reducing the availability of hosts required by parasites with complex life cycles. Most notably, the lower abundances of larval shark tapeworms at Kiritimati presumably reflect the fact that fishing has greatly depleted sharks there in comparison to Palmyra.

EcoHealth↗
USGS2012

The influence of external subsidies on diet, growth and Hg concentrations of freshwater sport fish: implications for management and fish consumption advisories

Mercury (Hg) contamination in sport fish is a global problem. In freshwater systems, food web structure, sport fish sex, size, diet and growth rates influence Hg bioaccumulation. Fish stocking is a common management practice worldwide that can introduce external energy and contaminants into freshwater systems. Thus, stocking can alter many of the factors that influence Hg concentrations in sport fish. Here we evaluated the influence of external subsidies, in the form of hatchery-raised rainbow trout Oncorhynchus mykiss on walleye Sander vitreus diet, growth and Hg concentrations in two freshwater systems. Stocking differentially influenced male and female walleye diets and growth, producing a counterintuitive size-contamination relationship. Modeling indicated that walleye growth rate and diet were important explanatory variables when predicting Hg concentrations. Thus, hatchery contributions to freshwater systems in the form of energy and contaminants can influence diet, growth and Hg concentrations in sport fish. Given the extensive scale of fish stocking, and the known health risks associated with Hg contamination, this represents a significant issue for managers monitoring and manipulating freshwater food web structures, and policy makers attempting to develop fish consumption advisories to protect human health in stocked systems.

Ecotoxicology↗
USGS2019

The Yellowstone River fish-kill: Fish health informs and is informed by vital signs monitoring

Trout are socioeconomically and ecologically important in the Greater Yellowstone Area (GYA); yet these fish face numerous threats. Disease may begin to play a larger role in reducing fish populations, partly because many existing threats may interact to exacerbate the frequency, extent, and severity of fish diseases (Lafferty 2009). For example, habitat loss and low summer flows might interact to stress fish, making them more susceptible to disease while also increasing fish densities in microhabitats, thereby creating conditions where infectious diseases are more easily spread. Conservation and management efforts to mitigate these threats often involve reactionary measures to unforeseen events. Long-term monitoring of aquatic vital signs and fish health, however, may provide important insights for predicting the spread of fish diseases and the extent and severity of outbreaks.

Idaho, Montana, Wyoming↗