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Scale‐dependent effects of isolation on seasonal patch colonisation by two Neotropical freshwater fishes

The metapopulation paradigm has been central to improve the conservation and management of natural populations. However, despite the large number of studies on metapopulation dynamics, the overall support for the relationships on which the paradigm is based has not been strong. Here, we studied the occupancy dynamics of two Neotropical fishes (i.e., Pimelodella gracilis and Leporinus friderici ) to investigate two fundamental premises of the metapopulation paradigm, that is, that isolation and area/habitat quality affect colonisation and extinction probabilities in predictable ways. In order to do this, we used a modification of occupancy models that allows modelling the probability of a site's occupancy as a function of the occupancy of its neighbourhood. We found a weak positive effect of neighbourhood occupancy on P . gracilis colonisation, which is consistent with the propagule rain metapopulation, that is, colonists arriving from outside the studied system. However, we found a strong negative neighbourhood effect on extinction probability, suggesting that declining populations from stream sections are rescued from extinction by neighbouring patches. In contrast, the effect of neighbourhood occupancy on the metapopulation dynamics of L. friderici was in the opposite direction, affecting positively colonisation but not affecting extinction rates, which is consistent with the classical metapopulation model. In addition, the occupancy dynamics of both species were affected by water velocity. To our knowledge, this is the first study to link directly dispersal to local population dynamics in Neotropical fishes, and one of the few studies doing inferences on spatial population dynamics based on direct estimates of neighbourhood occupancy.

Ecology of Freshwater Fish

Relations between fish abundances, summer temperatures, and forest harvest in a northern Minnesota stream system from 1997 to 2007

Short‐term effects of forest harvest on fish habitat have been well documented, including sediment inputs, leaf litter reductions, and stream warming. However, few studies have considered changes in local climate when examining postlogging changes in fish communities. To address this need, we examined fish abundances between 1997 and 2007 in a basin in a northern hardwood forest. Streams in the basin were subjected to experimental riparian forest harvest in fall 1997. We noted a significant decrease for fish index of biotic integrity and abundance of Salvelinus fontinalis and Phoxinus eos over the study period. However, for P. eos and Culaea inconstans , the temporal patterns in abundances were related more to summer air temperatures than to fine sediment or spring precipitation when examined using multiple regressions. Univariate regressions suggested that summer air temperatures influenced temporal patterns in fish communities more than fine sediment or spring precipitation.

Minnesota

Effects of salinity on freshwater fishes in coastal plain drainages in the southeastern U.S.

This review focuses on the influence of salinity on freshwater fishes in coastal rivers and estuaries of the southeastern U.S. Influences of salinity on freshwater fish species can be explained partly through responses evidenced by behavior, physiology, growth, reproduction, and food habits during all aspects of life history. Factors influencing the rate of salinity change affect the community structure and dynamics of freshwater fishes in brackish environments. Our understanding of the relation between salinity and the life history of freshwater fishes is limited because little ecological research has been conducted in low-salinity habitats that we consider an “interface” between freshwater streams and the estuary proper. Much of the available data are descriptive in nature and describe best general patterns, but more specific studies are required to better determine the influence of salinity on freshwater fishes. Improved understanding of the influence of human-induced changes on the productivity and viability of these important systems will require a new research focus.

Reviews in Fisheries Science

Extensive dispersal of Roanoke logperch ( Percina rex ) inferred from genetic marker data

The dispersal ecology of most stream fishes is poorly characterised, complicating conservation efforts for these species. We used microsatellite DNA marker data to characterise dispersal patterns and effective population size ( N e ) for a population of Roanoke logperch Percina rex , an endangered darter (Percidae). Juveniles and candidate parents were sampled for 2 years at sites throughout the Roanoke River watershed. Dispersal was inferred via genetic assignment tests (ATs), pedigree reconstruction (PR) and estimation of lifetime dispersal distance under a genetic isolation-by-distance model. Estimates of N e varied from 105 to 1218 individuals, depending on the estimation method. Based on PR, polygamy was frequent in parents of both sexes, with individuals spawning with an average of 2.4 mates. The sample contained 61 half-sibling pairs, but only one parent–offspring pair and no full-sib pairs, which limited our ability to discriminate natal dispersal of juveniles from breeding dispersal of their parents between spawning events. Nonetheless, all methods indicated extensive dispersal. The AT indicated unrestricted dispersal among sites ≤15 km apart, while siblings inferred by the PR were captured an average of 14 km and up to 55 km apart. Model-based estimates of median lifetime dispersal distance (6–24 km, depending on assumptions) bracketed AT and PR estimates, indicating that widely dispersed individuals do, on average, contribute to gene flow. Extensive dispersal of P. rex suggests that darters and other small benthic stream fishes may be unexpectedly mobile. Monitoring and management activities for such populations should encompass entire watersheds to fully capture population dynamics.

Ecology of Freshwater Fish

Evidence of energy and nutrient transfer from invasive pink salmon (Oncorhynchus gorbuscha) spawners to juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in northern Norway

Recent large influxes of non-native Pacific pink salmon ( Oncorhynchus gorbuscha ) to North European rivers have raised concern over their potential negative impacts on native salmonids and recipient ecosystems. The eggs and carcasses of semelparous pink salmon may provide a significant nutrient and energy subsidy to native biota, but this phenomenon has not been widely documented outside the species' native distribution. We analysed the stomach contents and stable isotope values (δ 15 N and δ 13 C) in muscle and liver tissues of juvenile Atlantic salmon ( Salmo salar ) and brown trout ( Salmo trutta ) to determine whether these native salmonids utilise marine-derived nutrients and energy provided by pink salmon eggs and carcasses in the subarctic river system Vesterelva, northern Norway. Although egg foraging and assimilation of marine-derived nutrients in fish body tissues were found to be minor at the population level, a few juvenile salmon and trout had recently eaten large quantities of pink salmon eggs. Some of these individuals also had high δ 15 N and δ 13 C values, indicating a long-term diet subsidised by marine-derived nutrients and energy from pink salmon eggs. Hence, our study provides novel evidence that the eggs of invasive pink salmon may provide an energetic, profitable food resource for juvenile native fish. More research is needed to understand the broader ecological implications for fishes and other biota in river ecosystems invaded by pink salmon.

Troms and Finnmark County

Role of large- and fine-scale variables in predicting catch rates of larval Pacific lamprey in the Willamette Basin, Oregon

Pacific lamprey Entosphenus tridentatus is an anadromous fish native to the Pacific Northwest of the USA. That has declined substantially over the last 40 years. Effective conservation of this species will require an understanding of the habitat requirements for each life history stage. Because its life cycle contains extended freshwater rearing (3–8 years), the larval stage may be a critical factor limiting abundance of Pacific lamprey. The objective of our study was to estimate the influence of barriers and habitat characteristics on the catch-per-unit-effort (CPUE) of larval Pacific lamprey in the Willamette River Basin, Oregon, USA. We sampled lampreys at multiple locations in wadeable streams throughout the basin in 2011–13 and used an information theoretic approach to examine the relative influence of fine- and large-scale predictors of CPUE. Pacific lamprey was observed across the basin, but its relative abundance appeared to be limited by the presence of natural and artificial barriers in some sub-basins. Lower velocity habitats such as off-channel areas and pools contained higher densities of larval lamprey; mean Pacific lamprey CPUE in off-channel habitats was 4 and 32 times greater than in pools and riffles respectively. Restoration and conservation strategies that improve fish passage, enhance natural hydrologic and depositional processes and increase habitat heterogeneity will likely benefit larval Pacific lamprey.

Oregon

Coal-mining intensity influences species and trait distributions of stream fishes in two Central Appalachian watersheds

Documenting responses of biotic assemblages to coal-mining impacts is crucial to informing regulatory and reclamation actions. However, attributing biotic patterns to specific stressors is difficult given the dearth of preimpact studies and prevalence of confounding factors. Analysing species distributions and abundances, especially stratified by species traits, provides insights into how assemblage composition shifts occur. We evaluated stream habitats and fish assemblages along a mining intensity gradient in 83 headwater (2nd- and 3rd-order) streams of the upper Clinch and Powell river basins in Virginia. Our multivariate gradient (MINE.PC1) was based on percentages of watershed area covered by surface mine, underground mine and valley fill to represent spatial variance in mining intensity. MINE.PC1 was positively correlated with conductivity and percentage of substrate as cobble. Forty fish-assemblage metrics were analysed via boosted regression trees to assess assemblage responses to mining intensity, while accounting for environmental variation and spatial structure among sites. Conductivity and MINE.PC1 were strongly negatively related to occurrences of Fantail Darter ( Etheostoma flabellare ) and sculpin ( Cottus ) spp. Several taxonomic, trophic and reproductive metrics of assemblage composition responded strongly to mining intensity or its instream correlates. For example, coal mining favoured omnivore-herbivores, but inhibited invertivores, simple lithophils and nonsimple nonlithophils. We revealed distinct negative and positive responses to mining-related stressors, which suggest changes to macroinvertebrate prey availability and/or contaminant loads contribute to fish extirpations in coalfield streams. Future assessments of mining impacts on fish assemblages could be more instructive by including characterisations of physicochemical stressors and regionally calibrated biotic metrics with demonstrated sensitivity to mining.

Virginia

Do postlarval amphidromous fishes transport marine‐derived nutrients and pollutants to Caribbean streams?

Diadromous fishes are known biotransport vectors that can move nutrients, energy and contaminants in an upstream direction in lotic ecosystems. This function has been demonstrated repeatedly in anadromous salmonids, but the role of other diadromous species, especially tropical taxa, as biotransport vectors is less studied. Amphidromous fish species exhibit potential to act as upstream vectors of nutrients and contaminants in their postlarval and juvenile stages, but this role is largely unknown because of limited understanding of larval growth habitats. Moreover, because some species are harvested in artisanal fisheries as postlarvae, and postlarvae are consumed by riverine and estuarine predators, heavy contaminant loads may present a human or wildlife health concern. This research incorporates stable isotope and contaminant analyses to infer larval habitats and contaminant accumulation of amphidromous fishes on the Caribbean island of Puerto Rico. The isotopic signatures of postlarval amphidromous fishes indicated marine basal sources and food web components, rather than those from riverine habitats. Additionally, postlarvae did not contain concentrations of anthropogenic pollutants that would be of ecological or human health concern. These findings are the first and strongest evidence that amphidromous fish postlarvae function as biotransport vectors of marine nutrients into and up river ecosystems without posing a health threat to the receiving food web or human consumers.

Ecology of Freshwater Fish

Do summer temperatures trigger spring maturation in pacific lamprey, Entosphenus tridentatus?

Pacific lamprey, Entosphenus tridentatus, return to streams and use somatic energy to fuel maturation. Body size decreases, the lamprey mature, spawn, and then die. We predicted that warm, summer temperatures (>20 ??C) would accentuate shrinkage in body size, and expedite sexual maturation and subsequent death. We compared fish reared in the laboratory at diel fluctuating temperatures of 20-24 ??C (mean = 21.8 ??C) with fish reared at cooler temperatures (13.6 ??C). The results confirmed our predictions. Lamprey from the warm water group showed significantly greater proportional decreases in body weight following the summer temperature treatments than fish from the cool water group. A greater proportion of warm water fish sexually matured (100%) and died (97%) the following spring than cool water fish (53% sexually mature, 61% died). Females tended to mature and die earlier than males, most obviously in the warm water group. ?? 2009 John Wiley & Sons A/S.

Ecology of Freshwater Fish

Relationships between water temperatures and upstream migration, cold water refuge use, and spawning of adult bull trout from the Lostine River, Oregon, USA

Understanding thermal habitat use by migratory fish has been limited by difficulties in matching fish locations with water temperatures. To describe spatial and temporal patterns of thermal habitat use by migratory adult bull trout, Salvelinus confluentus, that spawn in the Lostine River, Oregon, we employed a combination of archival temperature tags, radio tags, and thermographs. We also compared temperatures of the tagged fish to ambient water temperatures to determine if the fish were using thermal refuges. The timing and temperatures at which fish moved upstream from overwintering areas to spawning locations varied considerably among individuals. The annual maximum 7-day average daily maximum (7DADM) temperatures of tagged fish were 16-18 ??C and potentially as high as 21 ??C. Maximum 7DADM ambient water temperatures within the range of tagged fish during summer were 18-25 ??C. However, there was no evidence of the tagged fish using localized cold water refuges. Tagged fish appeared to spawn at 7DADM temperatures of 7-14 ??C. Maximum 7DADM temperatures of tagged fish and ambient temperatures at the onset of the spawning period in late August were 11-18 ??C. Water temperatures in most of the upper Lostine River used for spawning and rearing appear to be largely natural since there has been little development, whereas downstream reaches used by migratory bull trout are heavily diverted for irrigation. Although the population effects of these temperatures are unknown, summer temperatures and the higher temperatures observed for spawning fish appear to be at or above the upper range of suitability reported for the species. Published 2009. This article is a US Governmentwork and is in the public domain in the USA.

Ecology of Freshwater Fish

Diet of non-native northern snakehead ( Channa argus ) compared to three co-occurring predators in the lower Potomac River, USA

Introductions of large, non-native, carnivorous fishes continue to occur worldwide and represent a substantial management concern to global biodiversity. One of the most recent non-native fishes to successfully establish in North America is the northern snakehead ( Channa argus ), found in the lower Potomac River catchment. Dispersal of the northern snakehead throughout this system has been well documented since its original discovery in May 2004; however, little is known about the foraging habits of this species and its interactions with co-occurring predators. Here, we quantify northern snakehead diet in comparison with the diets of naturalised largemouth bass ( Micropterus salmoides ), and native American eel ( Anguilla rostrata ) and yellow perch ( Perca flavescens ) collected from tidal freshwaters bordering Virginia and Maryland near Fort Belvoir, Virginia. Over 97% of northern snakehead gut contents were fishes, with fundulid and centrarchid species consumed most frequently. Dietary overlap was biologically significant only between northern snakehead and largemouth bass. Aquatic invertebrates were >10 times more common in native predator diets, reducing dietary overlap with northern snakehead. Ontogenic shifts in adult northern snakehead diet were also detected, which may be explained by optimal foraging rather than true prey specificity. Northern snakehead may be occupying a novel niche based on a piscivorous diet, therefore limiting competition with resident predators in the lower Potomac River. Further research into interactions between largemouth bass and northern snakehead is needed to inform management decisions and understand the ecological impacts of this non-native species.

Maryland, Virginia

Introduced northern pike predation on salmonids in southcentral Alaska

Northern pike ( Esox lucius ) are opportunistic predators that can switch to alternative prey species after preferred prey have declined. This trophic adaptability allows invasive pike to have negative effects on aquatic food webs. In Southcentral Alaska, invasive pike are a substantial concern because they have spread to important spawning and rearing habitat for salmonids and are hypothesised to be responsible for recent salmonid declines. We described the relative importance of salmonids and other prey species to pike diets in the Deshka River and Alexander Creek in Southcentral Alaska. Salmonids were once abundant in both rivers, but they are now rare in Alexander Creek. In the Deshka River, we found that juvenile Chinook salmon ( Oncorhynchus tshawytscha ) and coho salmon ( O. kisutch ) dominated pike diets and that small pike consumed more of these salmonids than large pike. In Alexander Creek, pike diets reflected the distribution of spawning salmonids, which decrease with distance upstream. Although salmonids dominated pike diets in the lowest reach of the stream, Arctic lamprey ( Lampetra camtschatica ) and slimy sculpin ( Cottus cognatus ) dominated pike diets in the middle and upper reaches. In both rivers, pike density did not influence diet and pike consumed smaller prey items than predicted by their gape-width. Our data suggest that (1) juvenile salmonids are a dominant prey item for pike, (2) small pike are the primary consumers of juvenile salmonids and (3) pike consume other native fish species when juvenile salmonids are less abundant. Implications of this trophic adaptability are that invasive pike can continue to increase while driving multiple species to low abundance.

Alaska

Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America

Previous studies of lake trout, Salvelinus namaycush , spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry to locate, describe and compare lake trout spawning habitats. Adult lake trout were implanted with acoustic transmitters and tracked during five consecutive spawning seasons in a 19–27 km 2 region of the Drummond Island Refuge, Lake Huron, using the VEMCO Positioning System. Acoustic telemetry revealed discrete areas of aggregation on at least five reefs in the study area, subsequently confirmed by divers to contain deposited eggs. Notably, several identified spawning sites would likely not have been discovered using traditional methods because either they were too small and obscure to stand out on a bathymetric map or because they did not conform to the conceptual model of spawning habitat held by many biologists. Our most unique observation was egg deposition in gravel and rubble substrates located at the base of and beneath overhanging edges of large boulders. Spawning sites typically comprised <10% of the reef area and were used consistently over the 5-year study. Evaluation of habitat selection from the perspective of fish behaviour through use of acoustic transmitters offers potential to expand current conceptual models of critical spawning habitat.

Ecology of Freshwater Fish

Efficacy of a vacuum benthos sampler for collecting demersal fish eggs from gravel substratum

We used two densities of eggs (low=900 eggs/m 2 ; high=5100 eggs/m 2 ) in laboratory experiments to estimate the recovery efficiency of the Brown benthos sampler for collecting fish eggs from gravel substrate and to determine if differences (e. g., 5-fold) in egg density in the substratum could be detected with the sampler. The mean egg recovery efficiency of the sampler in the low and high density treatments was 30% (SE=8.7) and 35% (SE=3.8), respectively. The difference between the treatment means was not significant. Therefore, data from the two treatments were pooled and used to estimate the recovery efficiency of the sampler (32.7%, SE=4.4). However, we were able to detect a 5× difference in the number of eggs collected with the sampler between the two treatments. Our estimate of the recovery efficiency of the sampler for collecting fish eggs was less than those reported for the sampler's efficiency for collecting benthic macroinvertebrates. The low recovery efficiency of the sampler for collecting fish eggs does not lessen the utility of the device. Rather, ecologists planning to use the sampler must estimate the recovery efficiency of target fauna, especially if density estimates are to be calculated, because recovery efficiency probably is less than 100%.

Ecology of Freshwater Fish

Prey partitioning and use of insects by juvenile sockeye salmon and a potential competitor, threespine stickleback, in Afognak Lake, Alaska

Freshwater growth of juvenile sockeye salmon ( Oncorhynchus nerka ) depends upon the quality and quantity of prey and interactions with potential competitors in the foraging environment. To a large extent, knowledge about the ecology of lake-rearing juvenile sockeye salmon has emerged from studies of commercially important runs returning to deep nursery lakes, yet information from shallow nursery lakes (mean depth ≤ 10 m) is limited. We examined seasonal and ontogenetic variation in diets of juvenile sockeye salmon ( N = 219, 30–85 mm) and an abundant potential competitor, threespine stickleback ( Gasterosteus aculeatus ; N = 198, 42–67 mm), to understand their foraging ecology and potential trophic interactions in a shallow Alaska lake. This study revealed that adult insects made up 74% of all sockeye salmon diets by weight and were present in 98% of all stomachs in Afognak Lake during the summer of 2013. Diets varied temporally for all fishes, but small sockeye salmon (<60 mm) showed a distinct shift in consumption from zooplankton in early summer to adult insects in late summer. We found significant differences in diet composition between sockeye salmon and threespine stickleback and the origin of their prey indicated that they also separated their use of habitat on a fine scale; however, the two species showed overlap in size selectivity of zooplankton prey. Considering that aquatic insects can be a primary resource for juvenile sockeye salmon in Afognak Lake, we encourage the development of nursery lake carrying capacity models that include aquatic insects as a prey source for sockeye salmon.

Alaska

Multiple metrics provide context for the distribution of a highly mobile fish predator, the blue catfish

Data sets with increased spatial and temporal resolution can help researchers and resource managers quantify representative distributional patterns of mobile sportfish. In this research, first, we illustrate patterns of sportfish distribution using individual ( percent of population, residence time, number of movements ) and combined distributional metrics. Second, we apply these metrics to one highly mobile fish species, the blue catfish ( Ictalurus furcatus ), across a range of spatial (whole reservoir, region, site) and temporal (year, month, diel period) scales. Specifically, we tracked 123 acoustically tagged blue catfish with a 20-receiver array in Milford Reservoir, KS, USA. When we integrated metrics, four site-specific distributional patterns emerged: (a) a large, active multi-site fish aggregation, (b) localised site fidelity, (c) transitional sites and (d) rarely used locations. These patterns would not have been detected using a single metric as each measurement revealed a different piece of the distribution story. For example, if we had only quantified percent of population, we could identify fish location, but not whether individual fish spent time at a location or were just passing through. Our examination of multiple scales also provided a novel context for interpreting site-specific patterns. As an illustration of this insight, using conventional approaches, we would have observed heterogeneity, but we would not have detected fish aggregations, in which individual fish either remained or repeatedly returned to a site. In summary, our results show the advantage of setting the entire ecosystem as the study boundary to integrate multiple responses using a spatially and temporally extensive data set.

Kansas

Seasonal meso- and microhabitat selection by the northern snakehead ( Channa argus ) in the Potomac river system

The northern snakehead ( Channa argus ) is a large piscivorous fish that is invasive in eastern Europe and has recently been introduced in North America. We examined the seasonal habitat selection at meso- and microhabitat scales using radio-telemetry to increase understanding of the ecology of this species, which will help to inform management decisions. After the spawning season (postspawn season, September&ndash;November), northern snakeheads preferred offshore Eurasian water-milfoil ( Myriophyllum spicatum ) beds with shallow water (&sim;115 cm) and soft substrate. In the winter (November&ndash;April), these fish moved to deeper water (&sim;135 cm) with warmer temperatures, but habitat selection was weak at both scales. Northern snakeheads returned to shallower water (&sim;95 cm) in the prespawn season (April&ndash;June) and used milfoil and other cover. Habitat selection was the strongest at both meso- and microhabitat scales during the spawning season (June&ndash;September), when fish preferred macrophytes and cover in shallow water (&sim;88 cm). Our results help to identify habitats at the risk of invasion by northern snakeheads. We suggest that control efforts and future research focus on shallow waters, and take into consideration the seasonal habitat preferences.

Maryland, Virginia

Migratory delay leads to reduced passage success of Atlantic salmon smolts at a hydroelectric dam

Passage of fish through hydropower dams is associated with mortality, delay, increased energy expenditure and migratory failure for migrating fish and the need for remedial measures for both upstream and downstream migration is widely recognised. A functional fish passage must ensure safe and timely passage routes that a substantial portion of migrating fish will use. Passage solutions must address not only the number or percentage of fish that successfully pass a barrier, but also the time it takes to pass. Here, we used radiotelemetry to study the functionality of a fish bypass for downstream-migrating wild-caught and hatchery-released Atlantic salmon smolts. We used time-to-event analysis to model the influence of fish characteristics and environmental variables on the rates of a series of events associated with dam passage. Among the modelled events were approach rate to the bypass entry zone, retention rates in both the forebay and the entry zone and passage rates. Despite repeated attempts, only 65% of the tagged fish present in the forebay passed the dam. Fish passed via the bypass (33%), via spill (18%) and via turbines (15%). Discharge was positively related to approach, passage and retention rates. We did not detect any differences between wild and hatchery fish. Even though individual fish visited the forebay and the entry zone on multiple occasions, most fish passed during the first exposures to these zones. This study underscores the importance of timeliness to passage success and the usefulness of time-to-event analysis for understanding factors governing passage performance.

Ecology of Freshwater Fish