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Results for “Data Science Journal”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 55 records · Page 3Linked to original sources
USGS2003

Difficulties in determining factors that influence effective groundwater recharge in Ohio

As part of a COSI Academy research project, data from a recent statewide analysis of effective groundwater recharge were reexamined by students to further discern relations between recharge and selected environmental characteristics of individual drainage basins: 1) location of the main stem of a river relative to coarse and fine surficial sediments and 2) influence of land use. Lack of sufficiently detailed data was the principal difficulty in most phases of the examination. Other than a potential relation between recharge and the percentages of agricultural and forested land, no relations were found in visual comparisons of mapped and tabulated data.

Ohio Journal of Science↗
USGS2009

Use of land surface remotely sensed satellite and airborne data for environmental exposure assessment in cancer research

In recent years, geographic information systems (GIS) have increasingly been used for reconstructing individual-level exposures to environmental contaminants in epidemiological research. Remotely sensed data can be useful in creating space-time models of environmental measures. The primary advantage of using remotely sensed data is that it allows for study at the local scale (e.g., residential level) without requiring expensive, time-consuming monitoring campaigns. The purpose of our study was to identify how land surface remotely sensed data are currently being used to study the relationship between cancer and environmental contaminants, focusing primarily on agricultural chemical exposure assessment applications. We present the results of a comprehensive literature review of epidemiological research where remotely sensed imagery or land cover maps derived from remotely sensed imagery were applied. We also discuss the strengths and limitations of the most commonly used imagery data (aerial photographs and Landsat satellite imagery) and land cover maps.

Journal of Exposure Science and Environmental Epid↗
USGS2018

Evaluating spatial and temporal variability in growth and mortality for recreational fisheries with limited catch data

Understanding the spatial and temporal variability in life-history traits among populations is essential for the management of recreational fisheries. However, valuable freshwater recreational fish species often suffer from a lack of catch information. In this study, we demonstrated the use of an approach to estimate the spatial and temporal variability in growth and mortality in the absence of catch data and apply the method to riverine smallmouth bass ( Micropterus dolomieu ) populations in Pennsylvania, USA. Our approach included a growth analysis and a length-based analysis that estimates mortality. Using a hierarchical Bayesian approach, we examined spatial variability in growth and mortality by assuming parameters vary spatially but remain constant over time and temporal variability by assuming parameters vary spatially and temporally. The estimated growth and mortality of smallmouth bass showed substantial variability over time and across rivers. We explored the relationships of the estimated growth and mortality with spring water temperature and spring flow. Growth rate was likely to be positively correlated with these two factors, while young mortality was likely to be positively correlated with spring flow. The spatially and temporally varying growth and mortality suggest that smallmouth bass populations across rivers may respond differently to management plans and disturbance such as environmental contamination and land-use change. The analytical approach can be extended to other freshwater recreational species that also lack of catch data. The approach could also be useful in developing population assessments with erroneous catch data or be used as a model sensitivity scenario to verify traditional models even when catch data are available.

Pennsylvania↗
USGS2024

Sprinting performance and behavior of adult shortnose sturgeon (Acipenser brevirostrum)

Swimming ability and performance are central to the ecology of aquatic species and to the design of structures intended to promote access to habitat. This is particularly important for migratory species traveling over significant distances. Here, we present results of a study of swimming behaviors of adult shortnose sturgeon ( Acipenser brevirostrum ). Sturgeon were presented with velocity challenges of 0.5–2.5 m·s ‒1 in a 35 m long flume that they were allowed to enter and ascend volitionally. Attempt rate was greatest among large sturgeon, at warm temperatures, and at low flow velocities. Sturgeon swam for shorter distances and durations against high-velocity flows; larger sturgeon had greater overall performance and endurance, but when velocities were standardized to body lengths the relative performance was reduced with increased body size. Overall, however, sturgeon were able to swim at much greater speeds than previously predicted, consistent with other studies showing that volitional performance exceeds that of data collected in common laboratory apparatus.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2000

Using linear models with correlated errors to analyze changes in abundance of Lake Michigan fishes: 1973-1992

We examined annual changes in relative abundance of Lake Michigan fishes using linear models with correlated errors in space and time. Abundance of bloater ( Coregonus hoyi ), deepwater sculpin ( Myoxocephalus thompsoni ), slimy sculpin ( Cottus cognatus ), alewife ( Alosa pseudoharengus ), and rainbow smelt ( Osmerus mordax ) was monitored with bottom trawls at 10 discrete depths (between 18 and 110 m) off eight fixed ports from 1973 to 1992. The model describing abundance included fixed effects of year, port, depth, and interaction terms as well as quadratic and cubic effects of year and depth because changes in abundance were not strictly linear. Observed temporal trends in abundance varied with species and depth. Additionally, trends in alewife and slimy sculpin abundances depended on port. Cubic trends in the abundance of bloater and quadratic trends in deepwater sculpin and rainbow smelt abundances were similar among ports, permitting lakewide inferences for these species. Mean bloater abundance was low throughout the 1970s, increased during the 1980s, and reached high levels by 1990. Mean abundances of deepwater sculpin and rainbow smelt increased from 1973 to the mid-1980s and declined thereafter. The linear model with correlated errors can be readily applied to repeated-measures data from other fixed-station fishery surveys and is appropriate for data exhibiting spatial and temporal autocorrelations.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

A numerical study of geomorphic and oceanographic controls on wave-driven runup on fringing reefs with shore-normal channels

Many populated, tropical coastlines fronted by fringing coral reefs are exposed to wave-driven marine flooding that is exacerbated by sea-level rise. Most fringing coral reef are not alongshore uniform, but bisected by shore-normal channels; however, little is known about the influence of such channels on alongshore variations on runup and flooding of the adjacent coastline. We con-ducted a parametric study using the numeric model XBeach that demonstrates that a shore-normal channel results in substantial alongshore variations in waves, wave-driven water levels, and the resulting runup. Depending on the geometry and forcing, runup is greater either on the coastline adjacent to the channel terminus or at locations near the alongshore extent of the channel. The impact of channels on runup increases for higher incident waves, lower incident wave steepness, wider channels, a narrower reef, and shorter channel spacing. Alongshore varia-tion of infragravity waves is predominantly responsible for large-scale variations in runup out-side the channel, whereas setup, sea-swell waves, and very-low frequency waves mainly increase runup inside the channel. These results provide insight into which coastal locations adjacent to shore-normal channels are most vulnerable to high runup events, using only widely available data such as reef geometry and offshore wave conditions.

Journal of Marine Science and Engineering↗
USGS2018

A spatio-contextual probabilistic model for extracting linear features in hilly terrain from high-resolution DEM data

This paper introduces our research in developing a probabilistic model to extract linear terrain features from high resolution DEM (Digital Elevation Model) data. The proposed model takes full advantage of spatio-contextual information to characterize terrain changes. It first derives a quantifiable measure of spatio-contextual patterns of linear terrain feature, such as ridgelines, valley lines and crater boundaries, and then adopts multiple neighborhood analysis and a probability model to address data uncertainty in terrain surface modeling. Different from traditional approaches, the proposed model has the ability to achieve near-automated processing, and to support effective extraction of terrain features in both smooth and rough surfaces. Through a series of experiments, we demonstrate that the proposed approach outperforms existing techniques, including: thresholding, stream/drainage network analysis, visual descriptor, object-based image analysis and edge detection. We hope this work contributes to both the geospatial data science and geomorphology communities with a new way of utilizing high-resolution imagery in terrain analysis.

International Journal of Geographical Information ↗
USGS1977

An automated glass capillary gas chromatographic system for routine quantitative analysis

A steel capillary gas chromatographic system, based on the Hewlett-Packard (HP) Model 5711A gas chromatograph and HP model 3354A laboratory data system, was converted to an automated glass capillary system suitable for routine quantitative analysis of trace levels of hydrocarbons. Two instrument modifications, which were required for a fully automated system, are described. The system was tested with two different column installation methods. The HP recommended method of column installation showed much less discrimination against high molecular weight compounds than did a simpler column installation technique that introduced excessive dead volume (unswept by the carrier gas) into the HP Model 18740A glass capillary inlet system. Discrimination against high molecular weight compounds was shown to adversely affect their quantification. Data on the accuracy and precision of quantitative analyses of 18 hydrocarbons covering a wide range of boiling points and polarities are presented for both column installation techniques. Retention time reproducibiiity data for the same 18 compounds are also included.

Journal of Chromatographic Science↗
USGS1984

Paleogene geology and chronology of southwestern Umnak Island, Aleutian Islands, Alaska

The rocks of southwestern Umnak Island (Nikolski area) consist mainly of a slightly deformed marine sedimentary sequence intruded by hypabyssal quartz diorite sills and small plutons. Laminated and thin-bedded argillaceous and tuffaceous mudstone and siltstone reflect volcanic arc sedimentation from late Eocene to early Oligocene time. Zeolite facies minerals formed during diagenesis include heulandite, analcime, quartz, chlorite, and smectite. Radiometric dates from sill rock and plutons yield apparent ages of about 30 Ma, i.e, middle Oligocene. Chemical data from igneous rocks exhibit calc-alkaline and tholeiitic volcanic arc differentiation trends. Dikes of pyroxene basalt yield K/Ar apparent ages as old at 17 Ma, and a columnar-jointed plug of pyroxene basalt is as young as 1 Ma. The fossil ages and radiometric dates from southwestern Umnak Island are similar to those reported from other central and eastern Aleutian islands, and indicate uniformity in the chronology and tectonic development of the archipelago during the Paleogene. Paleomagnetic data suggest possible northward movement but remain equivocal and more work is indicated.

Alaska↗
USGS2019

A bibliometric profile of the Remote Sensing Open Access Journal published by MDPI between 2009 and 2018

Remote Sensing Open Access Journal (RS OAJ) is an international leading journal in the field of remote sensing science and technology. It was first published in the year 2009 and is currently celebrating tenth year of publications. In this research, a bibliometric analysis of RS OAJ was conducted based on 5588 articles published during the 10-year (2009–2018) time-period. The bibliometric analysis includes a comprehensive set of indicators such as dynamics and trends of publications, journal impact factor, total cites, eigenfactor score, normalized eigenfactor, CiteScore, h-index, h-classic publications, most productive countries (or territories) and institutions, co-authorship collaboration about countries (territories), research themes, citation impact of co-occurrences keywords, intellectual structure, and knowledge commutation. We found that publications of RS OAJ presented an exponential growth in the past ten years. From 2010 to 2017 (for which complete years data were available), the h-index of RS OAJ is 67. From 2009–2018, RS OAJ includes publications from 129 countries (or territories) and 3826 institutions. The leading nations contributing articles, based on 2009–2018 data, and listed based on ranking were: China, United States, Germany, Italy, France, Spain, Canada, England, Australia, Netherlands, Japan, Switzerland and Austria. The leading institutions, also for the same period and listed based on ranking were: Chinese Academy of Sciences, Wuhan University, University of Chinese Academy of Sciences, Beijing Normal University, The university of Maryland, National Aeronautics and Space Administration, National Oceanic and Atmospheric Administration, China University of Geosciences, United States Geological Survey, German Aerospace Centre, University of Twente, and California Institute of Technology. For the year 2017, RS OAJ had an impressive journal impact factor of 3.4060, a CiteScore of 4.03, eigenfactor score of 0.0342, and normalized eigenfactor score of 3.99. In addition, based on 2009–2018, data co-word analysis determined that “remote sensing”, “MODIS”, “Landsat”, “LiDAR” and “NDVI” are the high-frequency of author keywords co-occurrence in RS OAJ. The main themes of RS OAJ are multi-spectral and hyperspectral remote sensing, LiDAR scanning and forestry remote sensing monitoring, MODIS and LAI data applications, Remote sensing applications and Synthetic Aperture Radar (SAR). Through author keywords citation impact analysis, we find the most influential keyword is Unmanned Aerial Vehicle (UAV), followed, forestry, Normalized Difference Vegetation Index (NDVI), terrestrial laser scanning, airborne laser scanning, forestry inventory, urban heat island, monitoring, agriculture, and laser scanning. By analyzing the intellectual structure of RS OAJ, we identify the main reference publications and find that the themes are about Random Forests, MODIS vegetation indices and image analysis, etc. RS OAJ ranks first in cited journals and third in citing, this indicates that RS OAJ has the internal knowledge flow. Our results will bring more benefits to scholars, researchers and graduate students, who hopes to get a quick overview of the RS OAJ. And this article will also be the starting point for communication between scholars and practitioners. Finally, this paper proposed a nuanced h-index (nh-index) to measure productivity and intellectual contribution of authors by considering h-index based on whether the one is first, second, third, or nth author. This nuanced approach to determining h-index of authors is powerful indicator of an academician’s productivity and intellectual contribution.

Remote Sensing↗
USGS1986

Sequential tests for infectious hematopoietic necrosis virus in individuals and populations of sockeye salmon

The incidence and titer distribution of infectious hematopoietic necrosis virus in cavity fluid from spent female sockeye salmon ( Oncorhynchus nerka ) varied little when fish from a naturally spawning population were sampled three times on alternate days. However, when prespawning female sockeye salmon from a second population were individually tagged, penned, and sampled daily, the incidence and proportion of fish with high virus titer rose over a 6-d period. In 10 instances, consecutive cavity fluid samples from the same fish reverted from virus-positive to virus-negative. We suggest that spent fish should be sampled when accurate and quantitative data on the incidence and level of the virus are required.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2010

Impact of sampling techniques on measured stormwater quality data for small streams

Science-based sampling methodologies are needed to enhance water quality characterization for setting appropriate water quality standards, developing Total Maximum Daily Loads, and managing nonpoint source pollution. Storm event sampling, which is vital for adequate assessment of water quality in small (wadeable) streams, is typically conducted by manual grab or integrated sampling or with an automated sampler. Although it is typically assumed that samples from a single point adequately represent mean cross-sectional concentrations, especially for dissolved constituents, this assumption of well-mixed conditions has received limited evaluation. Similarly, the impact of temporal (within-storm) concentration variability is rarely considered. Therefore, this study evaluated differences in stormwater quality measured in small streams with several common sampling techniques, which in essence evaluated within-channel and within-storm concentration variability. Constituent concentrations from manual grab samples and from integrated samples were compared for 31 events, then concentrations were also compared for seven events with automated sample collection. Comparison of sampling techniques indicated varying degrees of concentration variability within channel cross sections for both dissolved and particulate constituents, which is contrary to common assumptions of substantial variability in particulate concentrations and of minimal variability in dissolved concentrations. Results also indicated the potential for substantial within-storm (temporal) concentration variability for both dissolved and particulate constituents. Thus, failing to account for potential cross-sectional and temporal concentration variability in stormwater monitoring projects can introduce additional uncertainty in measured water quality data. Copyright ?? 2010 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality↗
USGS2012

Reference hydrologic networks II. Using reference hydrologic networks to assess climate-driven changes in streamflow

Reference hydrologic networks (RHNs) can play an important role in monitoring for changes in the hydrological regime related to climate variation and change. Currently, the literature concerning hydrological response to climate variations is complex and confounded by the combinations of many methods of analysis, wide variations in hydrology, and the inclusion of data series that include changes in land use, storage regulation and water use in addition to those of climate. Three case studies that illustrate a variety of approaches to the analysis of data from RHNs are presented and used, together with a summary of studies from the literature, to develop approaches for the investigation of changes in the hydrological regime at a continental or global scale, particularly for international comparison. We present recommendations for an analysis framework and the next steps to advance such an initiative. There is a particular focus on the desirability of establishing standardized procedures and methodologies for both the creation of new national RHNs and the systematic analysis of data derived from a collection of RHNs.

Hydrological Sciences Journal↗
USGS2022

A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data

When estimating mortality from disease with fish population models, common disease surveillance data such as infection prevalence are not always informative, especially for fast-acting diseases that may go unobserved in infrequently sampled populations. In these cases, seroprevalence — the proportion of fish with measurable antibody levels in their blood — may be more informative. In cases of life-long immunity, seroprevalence data require less frequent sampling intervals than infection prevalence data and can reflect the cumulative exposure history of fish. We simulation tested the usefulness of seroprevalence data in an age-structured fish stock assessment model using viral hemorrhagic septicemia virus (VHSV) in Pacific herring ( Clupea pallasii ) as a case study. We developed a novel epidemiological model to simulate population dynamics and seroprevalence data and fitted to these data in an integrated catch-at-age model with equations that estimate age- and time-varying mortality from disease. We found that simulated seroprevalence data can provide accurate estimates of infection history and disease-associated mortality. Importantly, even models that misspecified nonstationary processes in background or disease-associated mortality, but included seroprevalence data, accurately estimated annual infection and population abundance.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2024

Increasing the usability and accessibility of Voyager 2 images of Triton

Much of what we know about Neptune’s moon Triton was inferred from the analysis of images returned by the Voyager 2 mission, the only spacecraft to have visited that putative ocean world. Unfortunately, the highest-resolution images (scales < 2 km pixel −1 ) are difficult to use because they are only available in nonstandard formats, and the locations of the images on Triton’s surface are incorrect by up to 200 km. Although image mosaics of Triton are publicly available, these do not include the highest-resolution data. Here we describe our effort to improve the usability and accessibility of Voyager 2 images of Triton. We used the USGS’s ISIS software to process 41 Triton images, including geometric calibration, radiometric calibration, and reseau removal. We improved the image locations using a photogrammetric control network with 958 points and 3910 image measurements. Least-squares bundle adjustment of the network yielded rms uncertainty of 0.50, 0.52, and 0.51 pixels in latitude, longitude, and radius, respectively, and maximum residuals of −4.21 and +3.20 pixels, respectively. Image-to-image alignment is therefore vastly improved. We have released these processed images as cloud-optimized GeoTIFFs in orthographic projection at the original pixel scale of each image. Associated mosaics have also been created and released to provide geologic context for the individual images. These products provide the science community with analysis-ready data that enable new investigations of Triton, increase accessibility to this unique data set, and continue to enhance the scientific return from the Voyager 2 mission.

Planetary Science Journal↗
USGS2000

Assessing the Kansas water-level monitoring program: An example of the application of classical statistics to a geological problem

Geologists may feel that geological data are not amenable to statistical analysis, or at best require specialized approaches such as nonparametric statistics and geostatistics. However, there are many circumstances, particularly in systematic studies conducted for environmental or regulatory purposes, where traditional parametric statistical procedures can be beneficial. An example is the application of analysis of variance to data collected in an annual program of measuring groundwater levels in Kansas. Influences such as well conditions, operator effects, and use of the water can be assessed and wells that yield less reliable measurements can be identified. Such statistical studies have resulted in yearly improvements in the quality and reliability of the collected hydrologic data. Similar benefits may be achieved in other geological studies by the appropriate use of classical statistical tools.

The Compass: Earth Science Journal of Sigma Gamma ↗
USGS1998

Loose-coupling a cellular automaton model and GIS: Long-term urban growth prediction for San Francisco and Washington/Baltimore

Prior research developed a cellular automaton model, that was calibrated by using historical digital maps of urban areas and can be used to predict the future extent of an urban area. The model has now been applied to two rapidly growing, but remarkably different urban areas: the San Francisco Bay region in California and the Washington/Baltimore corridor in the Eastern United States. This paper presents the calibration and prediction results for both regions, reviews their data requirements, compares the differences in the initial configurations and control parameters for the model in the two settings, and discusses the role of GIS in the applications. The model has generated some long term predictions that appear useful for urban planning and are consistent with results from other models and observations of growth. Although the GIS was only loosely coupled with the model, the model's provision of future urban patterns as data layers for GIS description and analysis is an important outcome of this type of calculation.

California, Maryland↗
USGS2016

Development and assessment of a new method for combining catch per unit effort data from different fish sampling gears: Multigear mean standardization (MGMS)

Fish community assessments are often based on sampling with multiple gear types. However, multivariate methods used to assess fish community structure and composition are sensitive to differences in the relative scale of indices or measures of abundance produced by different sampling methods. This makes combining data from different sampling gears and methods a serious challenge. We developed a method of combining catch per unit effort data that standardizes catch per unit effort data across gear types, which we call multigear mean standardization (MGMS). We evaluated how well MGMS and other types of standardization reflect underlying community structure through a computer simulation that generated model riverine-fish communities and simulated sampling data for two gears. In these simulations, combining sampling observations from two gears with MGMS produced community structure estimates that were highly correlated with true community structure under a variety of conditions that are common in large rivers. Our simulation results indicate that the use of MGMS to combine data from different sampling gears is an effective data manipulation method for the analysis of fish community structure.

Canadian Journal of Fisheries and Aquatic Sciences↗