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The U.S. Geological Survey Geologic Collections Management System (GCMS)—A master catalog and collections management plan for U.S. Geological Survey geologic samples and sample collections

**Updated guidance is available in USGS Instructional Memorandum CSS 2019-01 .** Abstract The U.S. Geological Survey (USGS) is widely recognized in the earth science community as possessing extensive collections of earth materials collected by research personnel over the course of its history. In 2006, a Geologic Collections Inventory was conducted within the USGS Geology Discipline to determine the extent and nature of its sample collections, and in 2008, a working group was convened by the USGS National Geologic and Geophysical Data Preservation Program to examine ways in which these collections could be coordinated, cataloged, and made available to researchers both inside and outside the USGS. The charge to this working group was to evaluate the proposition of creating a Geologic Collections Management System (GCMS), a centralized database that would (1) identify all existing USGS geologic collections, regardless of size, (2) create a virtual link among the collections, and (3) provide a way for scientists and other researchers to obtain access to the samples and data in which they are interested. Additionally, the group was instructed to develop criteria for evaluating current collections and to establish an operating plan and set of standard practices for handling, identifying, and managing future sample collections. Policies and procedures promoted by the GCMS would be based on extant best practices established by the National Science Foundation and the Smithsonian Institution. The resulting report—USGS Circular 1410, “The U.S. Geological Survey Geologic Collections Management System (GCMS): A Master Catalog and Collections Management Plan for U.S. Geological Survey Geologic Samples and Sample Collections”—has been developed for sample repositories to be a guide to establishing common practices in the collection, retention, and disposal of geologic research materials throughout the USGS. While constructing this report, the GCMS’s potential customers and their needs were considered. Two critical definitions have been clarified: a repository is a facility for the long-term management of geologic collections, and a collection is a set of specimens that have been brought together on the basis of some common characteristic. Required sample metadata for newly collected samples, as well as for older collections, were also stipulated and are listed and explained in this report. Several basic policies are also recommended by the GCMS in order to standardize operations among the physical repositories where collections are currently housed. The GCMS Collection Management Plan provides a set of protocols and templates for the management of scientific collections, including access, storage, transfer, and disposal of physical geologic samples and data. This plan is flexible to allow each repository to adapt the practices best suited to its collections. The general consideration for implementation of the GCMS is that all active USGS geologic sample repositories will form the core of GCMS and that participating science centers will develop procedures based on proposed GCMS methodologies. The GCMS is a collective resource for the entire USGS community and the users who discover the geologic materials kept in these repositories and seek to access them.

Circular

Influence of groundwater on distribution of dwarf wedgemussels (Alasmidonta heterodon) in the upper reaches of the Delaware River, northeastern USA

The remaining populations of the endangered dwarf wedgemussel (DWM) ( Alasmidonta heterodon ) in the upper Delaware River, northeastern USA, were hypothesized to be located in areas of greater-than-normal groundwater discharge to the river. We combined physical (seepage meters, monitoring wells and piezometers), thermal (fiber-optic distributed temperature sensing, infrared, vertical bed-temperature profiling), and geophysical (electromagnetic-induction) methods at several spatial scales to characterize known DWM habitat and explore this hypothesis. Numerous springs were observed using visible and infrared imaging along the river banks at all three known DWM-populated areas, but not in adjacent areas where DWM were absent. Vertical and lateral groundwater gradients were toward the river along all three DWM-populated reaches, with median upward gradients 3 to 9 times larger than in adjacent reaches. Point-scale seepage-meter measurements indicated that upward seepage across the riverbed was faster and more consistently upward at DWM-populated areas. Discrete and areally distributed riverbed-temperature measurements indicated numerous cold areas of groundwater discharge during warm summer months; all were within areas populated by DWM. Electromagnetic-induction measurements, which may indicate riverbed geology, showed patterning but little correlation between bulk streambed electromagnetic conductivity and areal distribution of DWM. In spite of complexity introduced by hyporheic exchange, multiple lines of research provide strong evidence that DWM are located within or directly downstream of areas of substantial focused groundwater discharge to the river. Broad scale thermal-reconnaissance methods (e.g., infrared) may be useful in locating and protecting other currently unknown mussel populations.

Delaware River

The geologic story of Yosemite National Park

Within 150 years, Yosemite has moved from great obscurity to worldwide fame as one of the most visited of our national parks. As a remarkable place where people can enjoy unparalleled scenes of natural beauty and where many easily observed geologic features are concentrated, the park is rivaled by few other areas on the planet. The majesty and immense variety of these features have inspired artists and photographers, intrigued tourists, and stirred controversy among geologists. Field studies in the Yosemite area have contributed to the development of our ideas about geologic processes, including the different actions of streams and glaciers in the evolution of the landscape, and the formation of granite, the basic bedrock of much of the Earth's continents. The park's role as a natural laboratory for geologic research cannot be overemphasized, and its investigation has led to many landmark studies by U.S. Geological Survey geologists over the past 70 years. In 1913, the first detailed program of research on the geology of the park and the origin ofYosemite Valley was begun by Francois Matthes and Frank Calkins. Their work, along with that of later generations of Survey geologists, myself included, serves as the basis for our present understanding of the geologic history of Yosemite and of the processes that formed and continue to mold its landscape. This book, which makes available in one volume a comprehensive summary of the current geologic knowledge of Yosemite National Park, is an excellent example of the Survey's continuing effort to provide earth-science information in the public service.

California

U.S. Geological Survey—Department of the Interior Region 11, Alaska—2021–22 biennial science report

U.S. Geological Survey (USGS) Mission: The USGS national mission is to monitor, analyze, and predict the current and evolving dynamics of complex human and natural Earth-system interactions, and to deliver actionable information at scales and timeframes relevant to decision-makers. Consistent with the national mission, the USGS in Alaska provides timely and objective scientific information to help address issues and inform management decisions across five inter-connected themes: Energy and Minerals; Geospatial Mapping; Natural Hazards; Water Quality, Streamflow, and Ice Dynamics; and Ecosystems. The USGS in Alaska consists of approximately 350 scientists and support staff working in three Alaska-based science centers, a Cooperative Research Unit, and USGS centers outside Alaska, with a combined annual science budget of about $60 million. In the last 5 years, USGS research in Alaska has produced many scientific benefits resulting from more than 1,050 publications. Publications relevant to Alaska can be conveniently searched by keyword through the USGS Publications Warehouse at https://pubs.er.usgs.gov/search?q=Alaska .

Alaska

U.S. Geological Survey—Department of the Interior Region 11, Alaska —2020 annual science report

U.S. Geological Survey (USGS) Mission: The USGS national mission is to monitor, analyze, and predict current and evolving dynamics of complex human and natural Earth-system interactions and to deliver actionable information at scales and timeframes relevant to decision-makers. Consistent with the national mission, the USGS in Alaska provides timely and objective scientific information to help address issues and inform management decisions across five inter-connected themes: Energy and Minerals; Geospatial Mapping; Natural Hazards; Water Quality, Streamflow, and Ice Dynamics; and Ecosystems. The USGS in Alaska consists of approximately 350 scientists and support staff working in three Alaska-based science centers, a Cooperative Research Unit, and USGS centers outside Alaska, with a combined annual science budget of about $60 million. In the last 5 years, USGS research in Alaska has produced many scientific benefits resulting from more than 1,100 publications. Publications relevant to Alaska can be conveniently searched by keyword through the USGS Publications Warehouse at https://pubs.er.usgs.gov/search?q=Alaska .

Alaska

Editorial: Plant phenology shifts and their ecological and climatic consequences

Climate change is causing plant phenology to shift, with consequences for ecosystems and the Earth’s climate. Over the last decades, the timing of many important phenological events has advanced in spring, such as leaf emergence and flowering, or been delayed in fall, such as leaf coloration and leaf fall. The consequences of such phenological shifts are still largely unknown, but are hypothesized to have cascading effects on ecosystems, carbon and water cycles, and Earths’ climate. With this research topic, we aimed to synthesize and inspire innovative research in plant phenology to address research questions and challenges on the consequences of phenological shifts on ecosystem function and local hydrology. The articles presented here improve our understanding of the physiological mechanisms responsible for the current phenological changes in spring and fall and provide insight into some of the consequences of these changes on hydrological cycles and ecosystem functioning.

Frontiers in Plant Science

U.S. Geological Survey—Department of the Interior, Region 11, Alaska—2023–24 biennial science report

Introduction U.S. Geological Survey (USGS) Mission—The USGS national mission is to monitor, analyze, and predict the current and evolving dynamics of complex human and natural Earth-system interactions and to deliver actionable information at scales and timeframes relevant to decision makers. Consistent with the national mission, the USGS in Alaska provides timely and objective scientific information to help address issues and inform management decisions across five interconnected focus areas: Energy and Minerals; Geospatial Mapping; Natural Hazards; Water Quality, Streamflow, and Ice Dynamics; and Ecosystems. The USGS in Alaska consists of approximately 350 scientists and support staff working in 3 Alaska-based science centers. USGS science activities are also initiated by the Cooperative Research Unit and USGS centers outside Alaska. In the last 5 years, USGS research in Alaska has produced many scientific benefits resulting from more than 900 publications. Publications relevant to Alaska can be conveniently searched by keyword through the USGS Publications Warehouse at https://pubs.usgs.gov/.

Alaska

Data sharing in magnetotellurics

Here, we introduce the first openly available comprehensive database of magnetotelluric (MT) and related electromagnetic data that we developed and matured over the past decade, explain how to access the data, and describe the challenges that had to be overcome to make MT data sharing possible. The database is a helpful tool for MT scientists, and is widely used by the international scientific community in teaching, planning future surveys, and then to leverage the value of new data at the inversion and interpretation stage. It has also turned into a primary resource for researchers in space weather, and for power grid industry. MT impedance, a transfer function that relates geoelectric fields to geomagnetic fields at the Earth’s surface, provides a critical missing component for estimation of geomagnetically induced currents: quasi-direct currents caused by geomagnetic storms that can destroy valuable equipment and cause extended blackouts. We envision that this database will also be useful for researchers in other areas of geophysics, such as seismology, who would like to use real MT data for hands-on learning and joint inversion analysis.

Eos, Earth and Space Science News

The U.S. Earthquake Prediction Program

Following on from the concepts of plate tectonics, the earth sciences are now embarking on a challenging course- the time prediction of geologic phenomena. Earthquake prediction is an outstanding example of this. However, earthquake prediction is not the only scientific goal. The destructive power of a large earthquake requires that we also take mitigating actions; these include earthquake engineering research to design construction that will resist earthquake shaking. Nevertheless, earthquake prediction has a vital role to play not only in the saving of lives, but in the reduction of economic loss and social disruption from large earthquakes. There are two distinct motivations for earthquake prediction. The mechanistic approach aims to understand the processes leading to a large earthquake. The empirical approach is governed by the immediate need to protect lives and property. With our current lack of knowledge about the earthquake process, future progress cannot be made without gathering a large body of measurements. These are required not only for the empirical prediction of earthquakes, but also for the testing and development of hypotheses that further our understanding of the processes at work. The earthquake prediction program is basically a program of scientific inquiry, but one which is motivated by social, political, economic, and scientific reasons. It is a pursuit that cannot rely on empirical observations alone nor can it carried out solely on a blackboard or in a laboratory. Experiments must be carried out in the real Earth.

Earthquake Information Bulletin (USGS)

Executive summary. In Second State of the Carbon Cycle Report (SOCCR2): A Sustained Assessment Report

Central to life on Earth, carbon is essential to the molecular makeup of all living things and plays a key role in regulating global climate. To understand carbon’s role in these processes, researchers measure and evaluate carbon stocks and fluxes. A stock is the quantity of carbon contained in a pool or reservoir in the Earth system (e.g., carbon in forest trees), and a flux is the direction and rate of carbon’s transfer between pools (e.g., the movement of carbon from the atmosphere into forest trees during photosynthesis). This document, the Second State of the Carbon Cycle Report (SOCCR2), examines the patterns of carbon stocks and fluxes—collectively called the “carbon cycle.” Emphasis is given to these patterns in specific sectors (e.g., agriculture and energy) and ecosystems (e.g., forests and coastal waters) and to the response of the carbon cycle to human activity. The purpose of SOCCR2 is to assess the current state of the North American carbon cycle and to present recent advances in understanding the factors that influence it. Concentrating on North America—Canada, the United States, and Mexico—the report describes carbon cycling for air, land, inland waters (streams, rivers, lakes, and reservoirs), and coastal waters (see Figure ES.1, p. 23). The questions framing the publication A U.S. Carbon Cycle Science Plan (Michalak et al., 2011) inspired development of three slightly modified questions that guide SOCCR2’s content and focus on North America in a global context: How have natural processes and human actions affected the global carbon cycle on land, in the atmosphere, in the ocean and other aquatic systems, and at ecosystem interfaces (e.g., coastal, wetland, and urban-rural)? How have socioeconomic trends affected atmospheric levels of the primary carbon-containing gases, carbon dioxide (CO2) and methane (CH4)? How have species, ecosystems, natural resources, and human systems been impacted by increasing greenhouse gas (GHG) concentrations, associated changes in climate, and carbon management decisions and practices? SOCCR2 synthesizes the most recent understanding of carbon cycling in North America, assessing new carbon cycle findings and information, the state of knowledge regarding core methods used to study the carbon cycle, and future research needed to best inform carbon management and policy options. Focusing on scientific developments in the decade since the First State of the Carbon Cycle Report (SOCCR1; CCSP 2007), SOCCR2 summarizes the past, current, and projected state of carbon sources, sinks, and natural processes, as well as contributions by human activities. In addition to CO2 and CH4, the report sometimes discusses nitrous oxide (N2O), a GHG associated with activities and processes that affect fluxes of carbon gases.1 SOCCR2 also describes improvements in analysis tools; developments in decision support; and new insights into ecosystem carbon cycling, human causes of changes in the carbon cycle, and social science perspectives on carbon. Since publication of SOCCR1, coordinated research from agencies in the three North American countries has enabled innovative observational, analytical, and modeling capabilities to further advance understanding of the North American carbon cycle (see Appendix D: Carbon Measurement Approaches and Accounting Frameworks, p. 834). Some of the report’s main conclusions, based on the Key Findings of each chapter, are highlighted in Box ES.1, Main Findings of SOCCR2, p. 24.

Report

An overview on current fluid-inclusion research and applications

This paper provides an overview of some of the more important developments in fluid-inclusion research and applications in recent years, including fluid-inclusion petrography, PVTX studies, and analytical techniques. In fluid-inclusion petrography, the introduction of the concept of 'fluid-inclusion assemblage' has been a major advance. In PVTX studies, the use of synthetic fluid inclusions and hydrothermal diamond-anvil cells has greatly contributed to the characterization of the phase behaviour of geologically relevant fluid systems. Various analytical methods are being developed and refined rapidly, with the Laser-Raman and LA-ICP-MS techniques being particularly useful for volatile and solute analyses, respectively. Ore deposit research has been and will continue to be the main field of application of fluid inclusions. However, fluid inclusions have been increasingly applied to other fields of earth science, especially in petroleum geology and the study of magmatic and earth interior processes.

Acta Petrologica Sinica

U.S. Geological Survey energy and minerals science strategy

The economy, national security, and standard of living of the United States depend heavily on adequate and reliable supplies of energy and mineral resources. Based on current population and consumption trends, the Nation's use of energy and minerals can be expected to grow, driving the demand for ever broader scientific understanding of resource formation, location, and availability. In addition, the increasing importance of environmental stewardship, human health, and sustainable growth place further emphasis on energy and mineral resources research and understanding. Collectively, these trends in resource demand and the interconnectedness among resources will lead to new challenges and, in turn, require cutting-edge science for the next generation of societal decisions. The contributions of the U.S. Geological Survey to energy and minerals research are well established. Based on five interrelated goals, this plan establishes a comprehensive science strategy. It provides a structure that identifies the most critical aspects of energy and mineral resources for the coming decade. * Goal 1. - Understand fundamental Earth processes that form energy and mineral resources. * Goal 2. - Understand the environmental behavior of energy and mineral resources and their waste products. * Goal 3. - Provide inventories and assessments of energy and mineral resources. * Goal 4. - Understand the effects of energy and mineral development on natural resources. * Goal 5. - Understand the availability and reliability of energy and mineral resource supplies. Within each goal, multiple, scalable actions are identified. The level of specificity and complexity of these actions varies, consistent with the reality that even a modest refocus can yield large payoffs in the near term whereas more ambitious plans may take years to reach fruition. As such, prioritization of actions is largely dependent on policy direction, available resources, and the sequencing of prerequisite steps that will lead up to the most visionary directions. The science strategy stresses early planning and places an emphasis on interdisciplinary collaboration and leveraging of expertise across the U.S. Geological Survey.

Open-File Report

On-demand global Landsat evapotranspiration product: Development, evaluation, and dissemination

Global actual evapotranspiration (ET) is one of the essential climate variables needed to understand and manage the relationships among food, energy, and water resources. The U.S. Geological Survey Earth Resources Observation and Science (EROS) Center launched a provisional ET product in 2020, offering on-demand, field-scale global coverage derived from Landsat data through the EROS Science Processing Architecture (ESPA) platform. The ESPA interface provides ET data for cloud-free Landsat overpasses starting in 1982 with Landsat 4 through the current Landsat 9. The ET data are delivered as a Provisional Level-3 Science product created using the Operational Simplified Surface Energy Balance (SSEBop) model. Landsat surface temperature and reference ET are the main model drivers along with vegetation index and net radiation for model parameterization. A large volume of Landsat-based ET orders (e.g., over 1,200,000 images from June 2020 through December 2025) around the world indicate increasing awareness and application of the ET data. The ESPA platform enables land and water resource managers and researchers to access a first-order ET product without requiring advanced knowledge of remote sensing technology or evapotranspiration modeling. We present the methodology and workflow of the on-demand Landsat ET product and its performance evaluations over diverse hydro-climatic settings. The product can help estimate field-scale consumptive water use and thus quickly and consistently assess historical water use, allocation, and budget to inform water management under changing environments. Future ET data aggregated to monthly and seasonal time scales are expected to enhance integration with decision-making tools and procedures.

Remote Sensing of Environment

To the National Map and beyond

Scientific understanding, technology, and social, economic, and environmental conditions have driven a rapidly changing demand for geographic information, both digital and analog. For more than a decade, the U.S. Geological Survey (USGS) has been developing innovative partnerships with other government agencies and private industry to produce and distribute geographic information efficiently; increase activities in remote sensing to ensure ongoing monitoring of the land surface; and develop new understanding of the causes and consequences of land surface change. These activities are now contributing to a more robust set of geographic information called The National Map (TNM). The National Map is designed to provide an up-to-date, seamless, horizontally and vertically integrated set of basic digital geographic data, a frequent monitoring of changes on the land surface, and an understanding of the condition of the Earth's surface and many of the processes that shape it. The USGS has reorganized its National Mapping Program into three programs to address the continuum of scientific activities-describing (mapping), monitoring, understanding, modeling, and predicting. The Cooperative Topographic Mapping Program focuses primarily on the mapping and revision aspects of TNM. The National Map also includes results from the Land Remote Sensing and Geographic Analysis and Monitoring Programs that provide continual updates, new insights, and analytical tools. The National Map is valuable as a framework for current research, management, and operational activities. It also provides a critical framework for the development of distributed, spatially enabled decision support systems.

Cartography and Geographic Information Science

Fighting misinformation in seismology: Expert opinion on earthquake facts vs fiction

Misinformation carries the potential for immense damage to public understanding of science and for evidence-based decision making at an individual and policy level. Our research explores the following questions within seismology: which claims can be considered misinformation, which are supported by a consensus, and which are still under scientific debate? Consensus and debate are important to quantify, because where levels of scientific consensus on an issue are high, communication of this fact may itself serve as a useful tool in combating misinformation. This is a challenge for earthquake science, where certain theories and facts in seismology are still being established. The present study collates a list of common public statements about earthquakes and provides–to the best of our knowledge–the first elicitation of the opinions of 164 earth scientists on the degree of verity of these statements. The results provide important insights for the state of knowledge in the field, helping identify those areas where consensus messaging may aid in the fight against earthquake related misinformation and areas where there is currently lack of consensus opinion. We highlight the necessity of using clear, accessible, jargon-free statements with specified parameters and precise wording when communicating with the public about earthquakes, as well as of transparency about the uncertainties around some issues in seismology.

Frontiers in Earth Science

North American Jurassic APW: The current dilemma

Geologists are in a quandary over the correct interpretation of paleomagnetic data for Jurassic rocks of the North American plate. Conflicting reference paleopoles and alternate methods of constructing apparent polar wander (APW) paths have led to a controversy regarding the configuration of Jurassic APW for cratonic North America. These differences have been recently disputed at meetings (see Eos , Spring Meeting Supplement, April 7, 1992, p. 94) and in an exchange of letters in the Journal of Geophysical Research-Solid Earth [ Butler et al ., 1992; Van Fossen and Kent , 1992a]. At stake is important information concerning the Jurassic paleogeography of North America and the whole of Pangea, as well as the nature and driving mechanism of plate movements. In addition, cratonic paleopoles provide a reference frame for measuring relative displacements of tectonostratigraphic terranes.

Eos Science News

Dust in the Critical Zone: North American case studies

The dust cycle facilitates the exchange of particles among Earth's major systems, enabling dust to traverse ecosystems, cross geographic boundaries, and even move uphill against the natural flow of gravity. Dust in the atmosphere is composed of a complex and ever-changing mixture that reflects the evolving human footprint on the landscape. The emission, transport, and deposition of dust interacts with and connects Critical Zone processes at all spatial and temporal scales. Landscape properties, land use, and climatic factors influence the wind erosion of soil and nutrient loss, which alters the long-term ecological dynamics at erosional locations. Once in the atmosphere, dust particles influence the amount of solar radiation reaching Earth, and interact with longwave (terrestrial) radiation, with cascading effects on the climate system. Finally, the wet and dry deposition of particles influences ecosystem structure, composition, and function over both short and long-term scales. Tracking dust particles from source to sink relies on monitoring and measurement of the geochemical composition and size distribution of the particles, space-borne and ground-based remote sensing, and dust modeling. Dust is linked to human systems via land use and policies that contribute to dust emissions and the health-related consequences of particulate loads and composition. Despite the significant influence dust has in shaping coupled natural-human systems, it has not been considered a key component of the Critical Zone. Here, we demonstrate that dust particles should be included as a key component of the Critical Zone by outlining how dust interacts with and shapes Earth System processes from generation, through transport, to deposition. We synthesize current understanding from global research and identify critical data and knowledge gaps while showcasing case studies from North America.

Earth-Science Reviews

U.S. Geological Survey natural hazards science strategy— Promoting the safety, security, and economic well-being of the Nation

Executive Summary The mission of the U.S. Geological Survey (USGS) in natural hazards is to develop and apply hazard science to help protect the safety, security, and economic well-being of the Nation. The costs and consequences of natural hazards can be enormous, and each year more people and infrastructure are at risk. USGS scientific research—founded on detailed observations and improved understanding of the responsible physical processes—can help to understand and reduce natural hazard risks and to make and effectively communicate reliable statements about hazard characteristics, such as frequency, magnitude, extent, onset, consequences, and where possible, the time of future events. To accomplish its broad hazard mission, the USGS maintains an expert workforce of scientists and technicians in the earth sciences, hydrology, biology, geography, social and behavioral sciences, and other fields, and engages cooperatively with numerous agencies, research institutions, and organizations in the public and private sectors, across the Nation and around the world. The scientific expertise required to accomplish the USGS mission in natural hazards includes a wide range of disciplines that this report refers to, in aggregate, as hazard science. In October 2010, the Natural Hazards Science Strategy Planning Team (H–SSPT) was charged with developing a long-term (10-year) Science Strategy for the USGS mission in natural hazards. This report fulfills that charge, with a document hereinafter referred to as the Strategy, to provide scientific observations, analyses, and research that are critical for the Nation to become more resilient to natural hazards. Science provides the information that decisionmakers need to determine whether risk management activities are worthwhile. Moreover, as the agency with the perspective of geologic time, the USGS is uniquely positioned to extend the collective experience of society to prepare for events outside current memory. The USGS has critical statutory and nonstatutory roles regarding floods, earthquakes, tsunamis, landslides, coastal erosion, volcanic eruptions, wildfires, and magnetic storms—the hazards considered in this plan. There are numerous other hazards of societal importance that are considered either only peripherally or not at all in this Strategy because they are either in another of the USGS strategic science plans (such as drought) or not in the overall mission of the USGS (such as tornados).

Circular