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USGS2006

Diatom diversity in chronically versus episodically acidified adirondack streams

The relationship between algal species richness and diversity, and pH is controversial. Furthermore, it is still unknown how episodic stream acidification following atmospheric deposition affects species richness and diversity. Here we analyzed water chemistry and diatom epiphyton dynamics and showed their contrasting behavior in chronically vs. episodically acidic streams in the Adirondack region. Species richness and diversity were significantly higher in the chronically acidic brown water stream, where organic acidity was significantly higher and the ratio of inorganic to organic monomeric aluminum significantly lower. Conversely, in the episodically acidic clear water stream, the inorganic acidity and pH were significantly higher and the diatom communities were very species-poor. This suggests that episodic acidification in the Adirondacks may be more stressful for stream biota than chronic acidity. Strong negative linear relationships between species diversity, Eunotia exigua, and dissolved organic carbon against pH were revealed after the influence of non-linear temporal trends was partialled out using a novel way of temporal modeling. ?? 2006 WILEY-VCH Verlag GmbH & Co. KGaA.

International Review of Hydrobiology↗

USGS2009

Sediment Loads and Yield, and Selected Water-Quality Parameters in Clear Creek, Carson City and Douglas County, Nevada, Water Years 2004-07

Some reaches of Clear Creek above U.S. Highway 395 have experienced severe erosion as a result of fires, extreme precipitation events, and past and current human activities in the basin. Previous evaluations of erosion in the basin have concluded that most of the sediment produced and transported in the basin was associated with U.S. Highway 50, a four-lane highway that roughly parallels Clear Creek through much of the basin. During this study (water years 2004-07), construction of roads and a large residential area and golf course in the area began and are likely to affect water quality and sediment transport in the basin. Sediment data were collected between October 2003 and September 2007 (water years 2004-07) from three sites along Clear Creek. Annual suspended-sediment load was estimated to range from 1,456 tons in water year 2006 to only 100 tons in water year 2004, which corresponds to suspended-sediment yields of 93.9 tons per square mile per year in 2006 to 6.4 tons per square mile per year in 2004. In water year 2006, the suspended-sediment load on December 31, 2005, alone exceeded the combined annual load for water years 2004, 2005, and 2007. Bedload sediment was estimated to comprise 73 percent of total sediment load in the creek. Mean annual suspended-sediment yield in Clear Creek basin was much greater than yields in the Logan House, Edgewood, and Glenbrook Creek basins in the adjacent Lake Tahoe basin. Comparison of data collected during this study with data collected by university researchers in the 1970s is inconclusive as to whether fundamental changes in basin sediment characteristics have occurred during the 30-year period because different methods and sampling locations were used in the earlier studies.

Scientific Investigations Report↗

USGS2001

Land use change and effects on water quality and ecosystem health in the Lake Tahoe basin, Nevada and California

Human activity in the Lake Tahoe Basin has increased substantially in the past four decades, causing significant impacts on the quality and clarity of the lake's famous deep, clear water. Protection of Lake Tahoe and the surrounding environment has become an important activity in recent years. A variety of agencies, including the Tahoe Regional Planning Agency, Tahoe Research Group of the University of California at Davis, Desert Research Institute of the University and Community College System of Nevada, U.S. Geological Survey (USGS), and a host of State (both Nevada and California) and local agencies have been monitoring and conducting research in the Basin in order to understand how the lake functions and to what extent humans have affected its landscape and ecosystem processes. In spite of all of these activities, there remains a lack of comprehensive land use change data and analysis for the Basin. A project is underway that unites the land cover mapping expertise of the USGS National Mapping Discipline with the hydrologic expertise of the Water Resources Discipline to assess the impacts of urban growth and land use change in the Lake Tahoe Basin. Three activities are planned over the next 3 years: (1) mapping the current and historic state of the land surface, (2) conducting analysis to document patterns, rates, and trends in urbanization, land use change, and ecosystem health, and (3) assessing the causes and consequences of land use change with regard to water quality and ecosystem health. We hypothesize that changes in the extent of urban growth and the corresponding increases in impervious surfaces and decreases in natural vegetation have resulted in severe impacts on ecosystem health and integrity, riparian zones and water quality over time. We are acting on multiple fronts to test this hypothesis through the quantification of landscape disturbances and impacts.

California, Nevada↗

USGS2007

A new towed platform for the unobtrusive surveying of benthic habitats and organisms

Maps of coral ecosystems are needed to support many conservation and management objectives, as well as research activities. Examples include ground-truthing aerial and satellite imagery, characterizing essential habitat, assessing changes, and monitoring the progress of restoration efforts. To address some of these needs, the U.S. Geological Survey developed the Along-Track Reef-Imaging System (ATRIS), a boat-based sensor package for mapping shallow-water benthic environments. ATRIS consists of a digital still camera, a video camera, and an acoustic depth sounder affixed to a moveable pole. This design, however, restricts its deployment to clear waters less than 10 m deep. To overcome this limitation, a towed version has been developed, referred to as Deep ATRIS. The system is based on a light-weight, computer-controlled, towed vehicle that is capable of following a programmed diving profile. The vehicle is 1.3 m long with a 63-cm wing span and can carry a wide variety of research instruments, including CTDs, fluorometers, transmissometers, and cameras. Deep ATRIS is currently equipped with a high-speed (20 frames · s-1) digital camera, custom-built light-emitting-diode lights, a compass, a 3-axis orientation sensor, and a nadir-looking altimeter. The vehicle dynamically adjusts its altitude to maintain a fixed height above the seafloor. The camera has a 29° x 22° field-of-view and captures color images that are 1360 x 1024 pixels in size. GPS coordinates are recorded for each image. A gigabit ethernet connection enables the images to be displayed and archived in real time on the surface computer. Deep ATRIS has a maximum tow speed of 2.6 m · s-1and a theoretical operating tow-depth limit of 27 m. With an improved tow cable, the operating depth can be extended to 90 m. Here, we present results from the initial sea trials in the Gulf of Mexico and Biscayne National Park, Florida, USA, and discuss the utility of Deep ATRIS for map-ping coral reef habitats. Several example mosaics illustrate the high-quality imagery that can be obtained with this system. The images also reveal the potential for unobtrusive animal observations; fish and sea turtles are unperturbed by the presence of Deep ATRIS

Florida↗

USGS2000

Seagrass responses to and recovery (?) from seven years of brown tide

Most harmful algal blooms are relatively short, violent paroxysms to aquatic systems. The Texas brown tide was unique in its 7-year domination of upper Laguna Madre wherein it reduced light penetrating 1 m from 31 to 63% on an annual basis between June 1990 and May 1997. In response, seagrasses declined in biomass in deep areas for two years. Over the next three years, bare areas opened up in the deepest areas of the seagrass meadow and the outer seagrass boundary retreated landward. In the last two years of the brown tide, regression of the dominant species, Halodule wrightii, slowed and stopped, and Halophila engelmanni, a previously minor species, revegetated some areas. Subsequent to cessation of meadow retreat, water clarity improved to pre-brown tide levels, consistent with the hypothesis that regeneration of nutrients from retreating seagrass meadow may have been the source of the nutrient subsidy required to sustain the brown tide at high concentration. However, after a short interlude of clear water and Halodule recovery, a resurgence of the bloom occurred and areas of regrowth succumbed. Although human activities did not seem to be involved in initiation or persistence of the brown tide, nutrients brought in by runoff from agricultural lands may have contributed to the return of bloom conditions.

Texas↗

USGS2008

Environmental settings of selected streams sampled for mercury in Oregon, Wisconsin, and Florida, 2002-06

From 2002 through 2006, the U.S. Geological Survey National Water-Quality Assessment Program conducted studies investigating mercury biogeochemistry and food-web bioaccumulation in eight streams from three distinct geographic areas of the United States. These streams varied greatly in environmental characteristics, including land-cover, hydrologic, climatic, and chemical characteristics. They ranged from a clear-water, high-gradient, low-percentage wetland stream in the Cascade Mountains of Oregon, to an urban stream near Milwaukee, Wisconsin, to a low-gradient, blackwater stream draining the Okefenokee and Pinhook Swamps along the Georgia-Florida border. This report summarizes the environmental settings of these eight streams.

Florida, Oregon, Wisconsin↗

USGS1999

Summer water clarity responses to phosphorus, Daphnia grazing, and internal mixing in Lake Mendota

Linear models were developed for predicting mean Secchi disk depth readings as a measure of water clarity for the summer months in Lake Mendota, Wisconsin. The 20-yr (1976-1995) data set also included external phosphorus (P) loadings and in-lake April P concentrations as indices of lake nutrient status, and monthly (28 d) water column stabilities and Daphnia biomasses as indices of lake mixing and algal grazing potentials, respectively. June Secchi depths were mostly controlled by food web dynamics, which dictated whether the larger-bodied Daphnia pulicaria or the smaller-bodied D. galeata mendotae dominated during the spring clear-water phase. May Daphnia biomasses were significantly greater in D. pulicaria-dominated years than in D. galeata-dominated years; D. pulicaria-year biomasses were also greater during the summer months. The model for the midsummer (July-August) months indicated that Secchi depths were inversely related to April P concentrations and positively related to midsummer Daphnia biomasses and lake stabilities. Scenarios for midsummer Secchi depths were tested using the observed minimum and maximum values for each predictor variate. While holding two variates constant, April P, Daphnia biomass, and lake stability each resulted in relatively similar Secchi ranges (0.81, 0.81, and 1.17 m, respectively). Our results suggest that summer water clarity in eutrophic Lake Mendota is controlled by interacting ecosystem processes linked to land use activities, lake food web dynamics, and climate.

Limnology and Oceanography↗

USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗

USGS1997

Geology and hydrogeology of the Florida Keys

This chapter discusses the geology and hydrogeology of the Florida Keys, and focuses on the islands formed of Pleistocene limestone. These islands, which are crossed when driving from Miami to Key West, are typically regarded as "the Florida Keys." The outstanding and fragile character of ecosystems on and around the Florida Keys has prompted State and Federal efforts to protect and preserve the remaining public portions of the region. The Florida Keys were largely ignored during the sixteenth, seventeenth, and eighteenth centuries, although the waters just offshore provided a major shipping thoroughfare to and from the New World. The Florida Keys are now recognized as one of the great recreational and environmental resources of the United States. The islands are outposts of a laid-back, tropical resort culture that has as its foundation warmth and clear water. A significant part of the attraction is fishing, diving, and boating around the area's coral reefs, which the islands protect. But the reefs were not always so highly valued. The Florida Keys that have protected the reefs for millennia, may now be the source of the agents that may accomplish what Agassiz thought was beyond man's power a century ago.

Florida↗

USGS2012

Use of a storm water retention system for conservation of regionally endangered fishes

Maintaining aquatic biodiversity in urban or suburban areas can be problematic because urban landscapes can be nearly devoid of aquatic habitats other than engineered basins for storm water management. These areas are usually of questionable value for fish, but we examined a case study in which five regionally imperiled fish species were reintroduced into an artificial storm water detention pond and subsequently thrived. Although not a formal experiment, postintroduction survey data suggested that three of the five species maintained high population densities for 10 years after initial stocking, and two persisted in lower numbers. Success was likely due to a combination of unique design features and prior habitat preparation that resulted in clear water conditions that supported dense vegetation. Stocked fish persisted despite occasional bouts of low dissolved oxygen and increased chloride levels resulting from road salt application within the watershed. Transplanted fish served as a source population for both research and further reintroduction experiments. We suggest that, for some fish species, habitat preservation has a middle ground between natural habitats and completely artificial environments that require constant husbandry and that storm water systems could be used to create engineered sanctuaries within the human landscape that have many potential benefits for both humans and fish.

Fisheries↗

USGS2022

Water-quality improvement of an agricultural watershed marsh after macrophyte establishment and point-source reduction

Green Lake, located in central Wisconsin USA within a watershed with land use dominated by agriculture, is listed as impaired under Sect. 303(d) of the Clean Water Act. The primary tributary, Silver Creek, is also impaired because of high total phosphorus (TP) concentrations. Silver Creek flows through a shallow marsh before reaching the lake. Prior to 2006, the marsh was turbid and free of macrophytes. Efforts to restrict carp ( Cyprinus carpio ) in the marsh and reduce the primary upstream phosphorus point source, resulted in the marsh becoming a clear-water, macrophyte-dominated system. The point source reduction and marsh phytoplankton-to-macrophyte shift reduced the export of TP and suspended sediment (SS). These measured reductions at the marsh outlet exceeded the documented reductions in the upstream point source suggesting that the shift to a macrophyte-dominated system drove part of the TP reductions. TP loads at the marsh outlet significantly decreased in all seasons; however, SS loads significantly decreased in all seasons except winter, suggesting the vegetation shift was an important driver for these reductions. During 2012–2017, the marsh served as an overall sink for TP and SS, retaining on average 1.59 kg/day and 0.95 MT/day, respectively. Overall, this study documents benefits of a multi-stakeholder, collaborative ecological effort to restore a marsh from a turbid system to a macrophyte-dominated system, which resulted in significant reductions in downstream TP and SS loading to a major inland lake. This effort may serve as a model for similar restorations in other watersheds with land use dominated by agriculture.

Wisconsin↗

USGS2017

Colorado River fish monitoring in Grand Canyon, Arizona; 2002–14 humpback chub aggregations

The humpback chub ( Gila cypha ) is an endangered cyprinid species endemic to the Colorado River. The largest remaining population of the species spawns and rears in the Little Colorado River in Grand Canyon. Construction and operation of Glen Canyon Dam has altered the main-stem Colorado River in Glen and Grand Canyons. Cold, clear water releases from the dam result in a river that is generally unsuitable for successful humpback chub reproduction. During the early 1990s, nine locations within the main-stem Colorado River were identified as humpback chub aggregations—areas with a consistent and disjunct group of fish with no significant exchange of individuals with other aggregations. We monitored main-stem Colorado River aggregations of humpback chub in Grand Canyon during 2010 to 2014 and compared our results to previous investigations. Relative abundance, as described by catch per unit effort (fish per hour) of adult humpback chub at most main-stem aggregations, generally increased from the 1990s to 2014. In addition, distribution of humpback chub in the main-stem Colorado River has increased since the 1990s. Movement of humpback chub between the Little Colorado River and other aggregations likely adds fish to those aggregations. There is clear evidence of reproduction near the 30-Mile aggregation, and reproduction at Middle Granite Gorge and downstream seems likely based on catches of gravid fish and captures of very young fish, especially during relatively warm water releases from Glen Canyon Dam, 2004 to 2011. Humpback chub relative abundance at Shinumo and Havasu Creek inflows increased following translocations of young humpback chub starting in 2009. In light of this information, we modify the original nine aggregations, combining two previously separate aggregations and dropping two locations to form six distinct aggregations of humpback chub. Trends in humpback chub abundance at main-stem aggregations, relative to management actions (for example, translocations) or changing environmental conditions (for example, river warming), informs management of the species across a riverscape scale within the Colorado River.

Colorado↗

USGS2015

Human activities cause distinct dissolved organic matter composition across freshwater ecosystems

Dissolved organic matter (DOM) composition in freshwater ecosystems is influenced by interactions between physical, chemical, and biological processes that are controlled, at one level, by watershed landscape, hydrology, and their connections. Against this environmental template, humans may strongly influence DOM composition. Yet, we lack a comprehensive understanding of DOM composition variation across freshwater ecosystems differentially affected by human activity. Using optical properties, we described DOM variation across five ecosystem groups of the Laurentian Great Lakes Region: large lakes, Kawartha Lakes, Experimental Lakes Area, urban stormwater ponds, and rivers (n = 184 sites). We determined how between ecosystem variation in DOM composition related to watershed size, land use and cover, water quality measures (conductivity, dissolved organic carbon (DOC), nutrient concentration, chlorophyll a ), and human population density. The five freshwater ecosystem groups had distinctive DOM composition from each other. These significant differences were not explained completely through differences in watershed size nor spatial autocorrelation. Instead, multivariate partial least squares regression showed that DOM composition was related to differences in human impact across freshwater ecosystems. In particular, urban/developed watersheds with higher human population densities had a unique DOM composition with a clear anthropogenic influence that was distinct from DOM composition in natural land cover and/or agricultural watersheds. This nonagricultural, human developed impact on aquatic DOM was most evident through increased levels of a microbial, humic-like parallel factor analysis component (C6). Lotic and lentic ecosystems with low human population densities had DOM compositions more typical of clear water to humic-rich freshwater ecosystems but C6 was only present at trace to background levels. Consequently, humans are strongly altering the quality of DOM in waters nearby or flowing through highly populated areas, which may alter carbon cycles in anthropogenically disturbed ecosystems at broad scales.

Global Change Biology↗

USGS1998

Water-quality assessment of the Ozark Plateaus study unit, Arkansas, Kansas, Missouri, and Oklahoma — Nutrients, bacteria, organic carbon, and suspended sediment in surface water, 1993-95

Nutrient, bacteria, organic carbon, and suspended- sediment samples were collected from 1993-95 at 43 surface-water-quality sampling sites within the Ozark Plateaus National Water- Quality Assessment Program study unit. Most surface-water-quality sites have small or medium drainage basins, near-homogenous land uses (primarily agricultural or forest), and are located predominantly in the Springfield and Salem Plateaus. The water-quality data were analyzed using selected descriptive and statistical methods to determine factors affecting occurrence in streams in the study unit. Nitrogen and phosphorus fertilizer use increased in the Ozark Plateaus study unit for the period 1965-85, but the application rates are well below the national median. Fertilizer use differed substantially among the major river basins and physiographic areas in the study unit. Livestock and poultry waste is a major source of nutrient loading in parts of the study unit. The quantity of nitrogen and phosphorus from livestock and poultry wastes differed substantially among the river basins of the study unit's sampling network. Eighty six municipal sewage-treatment plants in the study unit have effluents of 0.5 million gallons per day or more (for the years 1985-91). Statistically significant differences existed in surface-water quality that can be attributed to land use, physiography, and drainage basin size. Dissolved nitrite plus nitrate, total phosphorus, fecal coliform bacteria, and dissolved organic carbon concentrations generally were larger at sites associated with agricultural basins than at sites associated with forested basins. A large difference in dissolved nitrite plus nitrate concentrations occurred between streams draining basins with agricultural land use in the Springfield and Salem Plateaus. Streams draining both small and medium agricultural basins in the Springfield Plateau had much larger concentrations than their counterparts in the Salem Plateau. Drainage basin size was not a significant factor in affecting total phosphorus, fecal coliform bacteria, or dissolved organic carbon concentrations. Suspended-sediment concentrations generally were small and indicative of the clear water in streams in the Ozark Plateaus. A comparison of the dissolved nitrite plus nitrate, total phosphorus, and fecal coliform data collected at the fixed and synoptic sites indicates that generally the data for streams draining basins of similar physiography, land-use setting, and drainage basin size group together. Many of the variations are most likely the result of differences in percent agricultural land use between the sites being compared or are discharge related. The relation of dissolved nitrite plus nitrate, total phosphorus, and fecal coliform concentration to percent agricultural land use has a strong positive 2 Water-Quality Assessment-Nutrients, Bacteria, Organic Carbon, and Suspended Sediment in Surface Water, 1993-95 correlation, with percent agricultural land use accounting for between 42 and 60 percent of the variation in the observed concentrations.

Arkansas, Kansas, Missouri, Oklahoma↗

USGS2007

Identifying nutrient sources to three lagoons at Ofu and Olosega, American Samoa using δ15N of benthic macroalgae

Degradation of nearshore habitats is a serious problem in some areas of American Samoa, such as in Pago Pago Harbor on Tutuila Island, and is a smaller but chronic problem in other areas. Sedimentation, pollution, nutrient enrichment from surface runoff or groundwater, and trampling are the major factors causing the changes ( Peshut and Brooks, 2005 ). On the outer islands of Ofu and Olosega (Manu’a Islands; Fig. 1 ), there is an interesting contrast between relatively pristine lagoon habitats not far from comparatively degraded lagoon habitats. To’aga lagoon on the southeast side of Ofu Island ( Fig. 1 ) has clear waters, a high diversity of corals and fishes, no human habitations, and an undeveloped watershed with no streams. To’aga lagoon is within the boundaries of the National Park of American Samoa and is the site of long-term research on coral reef resilience and global climate change. Only 3 km to the east of To’aga is a degraded lagoon that fronts Olosega Village. The Olosega lagoon is similar in size but has significantly less live coral than To’aga, and blooms of filamentous algae have been reported to cover the Olosega lagoon/reef flat bottom (unpublished data, PC; Fig. 2 ). The islands are influenced by the same regional-scale and biogeochemical regimes, and both islands are remnants of a volcanic caldera ( Craig, 2005 ). Thus, local factors operating on the scale of a kilometer or less are thought to be driving the differences observed between lagoons. Land disturbance is limited to a road linking the villages, the clearing of vegetation for buildings, and two village dump sites located on the narrow strip of land between the steep slopes of the islands and the shoreline; there is no industry or associated pollution on either island. Cesspools are used for sewage disposal. Nutrient enrichment (from cesspools) of groundwater and the lagoon, as well as trampling during gleaning of reef organisms, are possible factors affecting the spatial relief and benthic composition of the lagoons. A pristine lagoon site (To’aga) and two that may be influenced by adjacent human populations (Ofu and Olosega Villages) were selected for study.

American Samoa↗

USGS2011

Water quality of the Chokosna, Gilahina, Lakina Rivers, and Long Lake watershed along McCarthy Road, Wrangell-St. Elias National Park and Preserve, Alaska, 2007-08

The Chokosna, Gilahina, and Lakina River basins, and the Long Lake watershed are located along McCarthy Road in Wrangell–St. Elias National Park and Preserve. The rivers and lake support a large run of sockeye (red) salmon that is important to the commercial and recreational fisheries in the larger Copper River. To gain a better understanding of the water quality conditions of these watersheds, these basins were studied as part of a cooperative study with the National Park Service during the open water periods in 2007 and 2008. Water type of the rivers and Long Lake is calcium bicarbonate with the exception of that in the Chokosna River, which is calcium bicarbonate sulfate water. Alkalinity concentrations ranged from 63 to 222 milligrams per liter, indicating a high buffering capacity in these waters. Analyses of streambed sediments indicated that concentrations of the trace elements arsenic, chromium, and nickel exceed levels that might be toxic to fish and other aquatic organisms. However, these concentrations reflect local geology rather than anthropogenic sources in this nearly pristine area. Benthic macroinvertebrate qualitative multi-habitat and richest targeted habitat samples collected from six stream sites along McCarthy Road indicated a total of 125 taxa. Insects made up the largest percentage of macroinvertebrates, totaling 83 percent of the families found. Dipterans (flies and midges) accounted for 43 percent of all macroinvertebrates found. Analysis of the macroinvertebrate data by non-metric multidimensional scaling indicated differences between (1) sites at Long Lake and other stream sites along McCarthy Road, likely due to different basin characteristics, (2) the 2007 and 2008 data, probably from the higher rainfall in 2008, and (3) macroinvertebrate data collected in south-central Alaska, which represents a different climate zone. The richness, abundance, and community composition of periphytic algae taxa was variable between sampling sites. Taxa richness and diversity were highest at the Long Lake outflow site, suggesting that the lake may have contributed planktonic taxa to the periphytic community and (or) created physical and chemical conditions at the outlet that were favorable to a variety of taxa. Long Lake is fed by groundwater and by clear water (non glacial) streams, resulting in relatively high Secchi-disc readings ranging from 17.5 to 23 feet. Depth profiles of water temperature in the lake show a strong stratification during the summer from the surface to about 13 feet, with temperatures ranging from 16 to 5 °C. Depth profiles of dissolved oxygen in the lake show a strong stratification between 26 and 33 feet, below which the concentrations of dissolved oxygen decrease from 10 to 2 milligrams per liter. Because the Long Lake outlet stream supports a large run of sockeye salmon and water temperature is an important factor during its life cycle, a logistic model was used to simulate 1998–2006 water temperatures at this site. Analysis of simulation results for 1998–2008 indicated no significant trends in water temperature. 2007 water temperatures were the highest during the 10-year period.

Alaska↗

USGS2022

Bathymetry retrieval from CubeSat image sequences with short time lags

The rapid expansion of CubeSat constellations could revolutionize the way inland and nearshore coastal waters are monitored from space. This potential stems from the ability of CubeSats to provide daily imagery with global coverage at meter-scale spatial resolution. In this study, we explore the unique opportunity to improve the retrieval of bathymetry offered by CubeSats, specifically those of the PlanetScope constellation. The orbital design of the PlanetScope constellation enables the acquisition of image sequences with short time lags (from seconds to hours). This characteristic allows multiple images to be captured during a short period of steady bathymetric conditions, especially in dynamic environments like rivers. We hypothesize that taking the ensemble mean of a CubeSat image sequence can enhance bathymetry retrieval compared to standard single-image analysis. Along with the existing optimal band ratio analysis (OBRA) algorithm, we also use a new neural network-based depth retrieval (NNDR) technique to infer bathymetry from both individual and time-averaged images. The two methodologies are evaluated using field data from five different river reaches with depths up to 15 m and both top-of-atmosphere (TOA) radiance and bottom-of-atmosphere (BOA) surface reflectance PlanetScope data products. Despite low spectral resolution and concerns about the radiometric quality of CubeSat imagery, accuracy assessment based on in-situ comparisons indicates the potential (0.52 < R 2 < 0.7 for the NNDR method) of PlanetScope imagery to retrieve depths up to ∼ 10 m in clear water conditions. The proposed image averaging consistently improves bathymetry retrieval over single image analysis. The NNDR technique was found to outperform OBRA, illustrating the importance of leveraging all spectral bands through machine learning approaches. TOA data provided more robust bathymetry results than BOA data for the OBRA technique, but the NNDR technique was minimally impacted by the type of data product.

International Journal of Applied Earth Observation↗

USGS2021

Geometry of obstacle marks at instream boulders-Integration of laboratory investigations and field observations

Obstacle marks are instream bedforms, typically composed of an upstream frontal scour hole and a downstream sediment accumulation in the vicinity of an obstacle. Local scouring at infrastructure (e.g. bridge piers) is a well‐studied phenomenon in hydraulic engineering, while less attention is given to the time‐dependent evolution of frontal scour holes at instream boulders and their geometric relations (depth to width, and length ratio). Furthermore, a comparison between laboratory studies and field observations is rare. Therefore, the morphodynamic importance of such scour features to fluvial sediment transport and morphological change is largely unknown. In this study, obstacle marks at boulder‐like obstructions were physically modelled in 30 unscaled process‐focused flume experiments (runtime per experiment ≥ 5760 min) at a range of flows (subcritical, clear‐water conditions, emergent and submerged water levels) and boundary conditions designed to represent the field setting (i.e. obstacle tilting, and limited thickness of the alluvial layer). Additionally, geometries of scour holes at 90 in‐situ boulders (diameter ≥ 1 m) located in a 50‐km segment of the Colorado River in Marble Canyon (AZ) were measured from a 1 m‐resolution digital elevation model. Flume experiments reveal similar evolution of local scouring, irrespective of hydraulic conditions, controlled by the scour incision, whereas the thickness of the alluvial layer and obstacle tilting into the evolving frontal scour hole limit incision. Three temporal evolution phases—(1) rapid incision, (2) decreasing incision, and (3) scour widening—are identified based on statistical analysis of spatiotemporal bed elevation time series. A quantitative model is presented that mechanistically predicts enlargement in local scour length and width based on (1) scour depth, (2) the inclination of scour slopes, and (3) the planform area of the frontal scour hole bottom. The comparison of field observations and laboratory results demonstrates scale invariance of geometry, which implies similitude of processes and form rather than equifinality.

Earth Surface Processes and Landforms↗