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Comparison of simulated HyspIRI with two multispectral sensors for invasive species mapping

This paper assesses the potential of a single HYSPIRI scene to estimate cover of the non-native invasive buffelgrass (Pennisetum ciliare) in a heterogeneous Sonoran Desert scrub ecosystem. We simulated HYSPIRI (60 m) along with two multispectral sensors, Thematic Mapper (TM; 30 m) and Advanced Space-borne Thermal Emission and Reflection Spectrometer (ASTER; 15 m), from high-resolution Airborne Visible/Infrared Imaging Spectrometer (AVIRIS; 3.2 m) imagery in an area infested by buffelgrass near Tucson, Arizona. We compared classification accuracies of all simulated sensors at spatial resolutions of 15 m, 30 m, and 60 m to evaluate tradeoffs of spectral and spatial resolution across the sensors. Although spectroscopically superior to Landsat TM and ASTER, ASTER easily outperformed HYSPIRI for small infestations (225 m 2 ) on account of its spatial resolution. Shortwave-infrared bands near 2.2 µm were key indicators for both HYSPIRI and ASTER, highlighting the benefit of narrow-wave SWIR for mapping invasive species in arid ecosystems.

Photogrammetric Engineering and Remote Sensing

Chapter 4: A sampling and analytical approach to develop spatial distribution models for sagebrush-associated species

Understanding multi-scale floral and faunal responses to human land use is crucial for informing natural resource management and conservation planning. However, our knowledge on how land use influences sagebrush (Artemisia spp.) ecosystems is limited primarily to site-specific studies. To fill this void, studies across large regions are needed that address how species are distributed relative to type, extent, and intensity of land use. We present a study design for the Wyoming Basin Ecoregional Assessment (WBEA) to sample sagebrush-associated flora and fauna along a land cover-human land use gradient. To minimize field costs, we sampled various taxonomic groups simultaneously on transects (ungulates and lagomorphs), point counts (song birds), and area-searches of 7.29-ha survey blocks (pellet counts, burrow counts, reptile surveys, medium-sized mammals, ant mounds, rodent trapping, and vegetation sampling of native and exotic plants). We then present an exploratory approach to develop species occurrence and abundance models when a priori model building is not an option. Our study design has broad applications for large-scale evaluations of arid ecosystems.

Wyoming

Surface disturbance of cryptobiotic soil crusts: nitrogenase activity, chlorophyll content, and chlorophyll degradation

Cryptobiotic soil crusts are an important component of semiarid and arid ecosystems. An important role of these crusts is the contribution of fixed nitrogen to cold‐desert ecosystems. This study examines the residual effects of various intensities and combinations of different surface disturbances (raking, scalping, and tracked vehicles) on nitrogenase activity, chlorophyll content, and chlorophyll degradation in these soil crusts. Nine months after disturbance chlorophyll content of disturbed soils was not statistically different from undisturbed controls, except in the scalped treatments, indicating recovery of this characteristic is fairly quick unless surface material is removed. Differences in chlorophyll degradation among treatments were not statistically significant. However, nitrogenase activity in all treatments showed tremendous reductions, ranging from 77–97%, when compared to the control, indicating this characteristic is slow to recover. Consequently, assessment of crustal recovery from disturbance must include not only visual and biomass characteristics but other physiological measurements as well. Areas dominated by these crusts should be managed conservatively until the implications of crustal disturbance is better understood.

Arid Soil Research and Rehabilitation

Can surface treatments and climate matching enhance restoration success in the Sonoran Desert?

Introduction Restoring native plant communities in arid ecosystems through seeding is a critical yet often unsuccessful strategy due to severe environmental stressors, including degraded soils, low and variable rainfall, and seed predation. Objectives To improve restoration outcomes, we examined the influence of seed mix types and soil surface treatments on seeded and unseeded plant establishment across three Sonoran Desert sites, Arizona, United States. Methods Using a factorial design, we tested two seed mix types (cool versus warm adapted species) and four soil surface treatments (pits, mulch, connectivity modifiers or ConMods, and controls) on plant establishment. We examined if patterns of plant establishment could be predicted by whether the climate envelope of species in the seed mix types was similar to the site climate where they were seeded (climate matching). We monitored seeded and unseeded species establishment for 3 years and analyzed these effects using generalized linear mixed models and Tukey-adjusted multiple comparisons. Results Pit treatments significantly enhanced seeded species density by nearly 3× and cover by 2× compared with ConMods and increased unseeded plant density by 2× to 4× times during post-drought springs. During these same seasons, species suited to cooler temperatures (e.g. Salvia columbariae and Lupinus sparsiflorus ) had higher cover at the site receiving the highest precipitation, and species suited to warmer temperatures (e.g. Sphaeralcea ambigua and Senna covesii ) established better at the drier two sites. Conclusions In arid systems, surface treatments like pits that retain soil moisture were most promising for supporting seed-based restoration, and matching species that have high temperature tolerance with hotter, drier sites may enhance restoration success.

Arizona

Shrub influence on soil carbon and nitrogen in a semi-arid grassland is mediated by precipitation and largely insensitive to livestock grazing

Dryland (arid and semi-arid) ecosystems globally provide more than half of livestock production and store roughly one-third of soil organic carbon (SOC). Biogeochemical pools are changing due to shrub encroachment, livestock grazing, and climate change. We assessed how vegetation microsite, grazing, and precipitation interacted to affect SOC and total nitrogen (TN) at a site with long-term grazing manipulations and well-described patterns of shrub encroachment across elevation and mean annual precipitation (MAP) gradients. We analyzed SOC and TN in the context of vegetation cover at ungrazed locations within livestock exclosures, high-intensity grazing locations near water sources, and moderate-intensity grazing locations away from water. SOC was enhanced by MAP ( p < 0.0001), but grazing intensity had little effect regardless of MAP ( p = 0.12). Shrubs enhanced SOC (300–1279 g C m −2 ) and TN (27–122 g N m −2 ), except at high MAP where the contribution or stabilization of shrub inputs relative to grassland inputs was likely diminished. Cover of perennial herbaceous plants and litter were significant predictors of SOC ( r 2 = 0.63 and 0.34, respectively) and TN ( r 2 = 0.64 and 0.30, respectively). Our results suggest that continued shrub encroachment in drylands can increase SOC storage when grass production remains high, although this response may saturate with higher MAP. In contrast, grazing – at least at the intensities of our sites – has a lesser effect. These effects underscore the need to understand how future climate and grazing may interact to influence dryland biogeochemical cycling.

Arid Land Research and Management

The impact of climate and reservoirs on longitudinal riverine carbon fluxes from two major watersheds in the Central and Intermontane West

A nested sampling network on the Colorado (CR) and Missouri Rivers (MR) provided data to assess impacts of large-scale reservoir systems and climate on carbon export. The Load Estimator (LOADEST) model was used to estimate both dissolved inorganic and organic carbon (DIC and DOC) fluxes for a total of 22 sites along the main stems of the CR and MR. Both the upper CR and MR DIC and DOC fluxes increased longitudinally, but the lower CR fluxes decreased while the lower MRs continued to increase. We examined multiple factors through space and time that help explain these flux patterns. Seasonal variability in precipitation and temperature, along with site-level concentration versus discharge relationships proved to be significant factors explaining much of the difference among sites located below reservoirs as compared to sites located in more free-flowing segments of the river. The characterization of variability in carbon exports over space and time provides a basis for understanding carbon cycling and transport within river basins affected by large reservoir systems, particular in arid-to semi-arid ecosystems.

Journal of Geophysical Research: Biogeosciences

Refining the cheatgrass–fire cycle in the Great Basin: Precipitation timing and fine fuel composition predict wildfire trends

Larger, more frequent wildfires in arid and semi-arid ecosystems have been associated with invasion by non-native annual grasses, yet a complete understanding of fine fuel development and subsequent wildfire trends is lacking. We investigated the complex relationships among weather, fine fuels, and fire in the Great Basin, USA. We first modeled the annual and time-lagged effects of precipitation and temperature on herbaceous vegetation cover and litter accumulation over a 26-year period in the northern Great Basin. We then modeled how these fine fuels and weather patterns influence subsequent wildfires. We found that cheatgrass cover increased in years with higher precipitation and especially when one of the previous 3 years also was particularly wet. Cover of non-native forbs and native herbs also increased in wet years, but only after several dry years. The area burned by wildfire in a given year was mostly associated with native herb and non-native forb cover, whereas cheatgrass mainly influenced area burned in the form of litter derived from previous years’ growth. Consequently, multiyear weather patterns, including precipitation in the previous 1–3 years, was a strong predictor of wildfire in a given year because of the time needed to develop these fine fuel loads. The strong relationship between precipitation and wildfire allowed us to expand our inference to 10,162 wildfires across the entire Great Basin over a 35-year period from 1980 to 2014. Our results suggest that the region's precipitation pattern of consecutive wet years followed by consecutive dry years results in a cycle of fuel accumulation followed by weather conditions that increase the probability of wildfire events in the year when the cycle transitions from wet to dry. These patterns varied regionally but were strong enough to allow us to model annual wildfire risk across the Great Basin based on precipitation alone.

Idaho

Long-term persistence of horse fecal DNA in the environment makes equids particularly good candidates for non-invasive sampling

Fecal DNA collected noninvasively can provide valuable information about genetic and ecological characteristics. This approach has rarely been used for equids, despite the need for conservation of endangered species and management of abundant feral populations. We examined factors affecting the efficacy of using equid fecal samples for conservation genetics. First, we evaluated two fecal collection methods (paper bag vs. ethanol). Then, we investigated how time since deposition and month of collection impacted microsatellite amplification success and genotyping errors. Between May and November 2014, we collected feral horse fecal samples of known age each month in a feral horse Herd Management Area in western Colorado and documented deterioration in the field with photographs. Samples collected and dried in paper bags had significantly higher amplification rates than those collected and stored in ethanol. There was little difference in the number of loci that amplified per sample between fresh fecal piles and those that had been exposed to the environment for up to 2 months (in samples collected in paper bags). After 2 months of exposure, amplification success declined. When comparing fresh (0–2 months) and old (3–6 months) fecal piles, samples from fresh piles had more matching genotypes across samples, better amplification success and less allelic dropout. Samples defecated during the summer and collected within 2 months of deposition had highest number of genotypes matching among samples, and lowest rates of amplification failure and allelic dropout. Due to the digestive system and amount of fecal material produced by equids, as well as their occurrence in arid ecosystems, we suggest that they are particularly good candidates for noninvasive sampling using fecal DNA.

Colorado

Small-Scale Vertical Distribution of Bacterial Biomass and Diversity in Biological Soil Crusts from Arid Lands in the Colorado Plateau

We characterized, at millimeter resolution, bacterial biomass, diversity, and vertical stratification of biological soil crusts in arid lands from the Colorado Plateau. Microscopic counts, extractable DNA, and plate counts of viable aerobic copiotrophs (VAC) revealed that the top centimeter of crusted soils contained atypically large bacterial populations, tenfold larger than those in uncrusted, deeper soils. The plate counts were not always consistent with more direct estimates of microbial biomass. Bacterial populations peaked at the immediate subsurface (1-2 mm) in light-appearing, young crusts, and at the surface (0-1 mm) in well-developed, dark crusts, which corresponds to the location of cyanobacterial populations. Bacterial abundance decreased with depth below these horizons. Spatially resolved DGGE fingerprints of Bacterial 16S rRNA genes demonstrated the presence of highly diverse natural communities, but we could detect neither trends with depth in bacterial richness or diversity, nor a difference in diversity indices between crust types. Fingerprints, however, revealed the presence of marked stratification in the structure of the microbial communities, probably a result of vertical gradients in physicochemical parameters. Sequencing and phylogenetic analyses indicated that most of the naturally occurring bacteria are novel types, with low sequence similarity (83-93%) to those available in public databases. DGGE analyses of the VAC populations indicated communities of lower diversity, with most types having sequences more than 94% similar to those in public databases. Our study indicates that soil crusts represent small-scale mantles of fertility in arid ecosystems, harboring vertically structured, little-known bacterial populations that are not well represented by standard cultivation methods.

Microbial Ecology

Resilience to stress and disturbance, and resistance to Bromus tectorum L. invasion in cold desert shrublands of western North America

Alien grass invasions in arid and semi-arid ecosystems are resulting in grass–fire cycles and ecosystem-level transformations that severely diminish ecosystem services. Our capacity to address the rapid and complex changes occurring in these ecosystems can be enhanced by developing an understanding of the environmental factors and ecosystem attributes that determine resilience of native ecosystems to stress and disturbance, and resistance to invasion. Cold desert shrublands occur over strong environmental gradients and exhibit significant differences in resilience and resistance. They provide an excellent opportunity to increase our understanding of these concepts. Herein, we examine a series of linked questions about (a) ecosystem attributes that determine resilience and resistance along environmental gradients, (b) effects of disturbances like livestock grazing and altered fire regimes and of stressors like rapid climate change, rising CO 2 , and N deposition on resilience and resistance, and (c) interacting effects of resilience and resistance on ecosystems with different environmental conditions. We conclude by providing strategies for the use of resilience and resistance concepts in a management context. At ecological site scales, state and transition models are used to illustrate how differences in resilience and resistance influence potential alternative vegetation states, transitions among states, and thresholds. At landscape scales management strategies based on resilience and resistance—protection, prevention, restoration, and monitoring and adaptive management—are used to determine priority management areas and appropriate actions.

Ecosystems

Spatiotemporal patterns of cheatgrass invasion in Colorado Plateau National Parks

Exotic annual grasses are transforming native arid and semi-arid ecosystems globally by accelerating fire cycles that drive vegetation state changes. Cheatgrass ( Bromus tectorum ), a particularly widespread and aggressive exotic annual grass, is a key management target in national parks of the western United States due to its impacts on wildfire and biodiversity loss. Cheatgrass is known for its high interannual variability and can grow in a wide range of conditions.

Colorado

Resiliency of biological soil crusts and vascular plants varies among morphogroups with disturbance intensity

Background and aims Disturbance affects the ability of organisms to persist on a site, and disturbance history acts as a filter of community composition. This is true for vascular plants and morphological groups of biocrusts, which respond differently to disturbance. Although functioning arid ecosystems include both groups , filtering of morphological groups of biocrusts has not previously been compared simultaneously with the responses of vascular plants. Methods Using a chronosequence approach, cover of vascular plants and biocrusts was examined across chronic disturbance gradients related to invasion by exotic species and grazing by livestock, following the acute disturbance of fire using paired burned and unburned plots in Wyoming big sagebrush on 99 plots. Results Cover of vascular plants and biocrusts was related to disturbance more so than abiotic factors of precipitation following fire, soil chemistry, percent coarse fragment and heat load index. Over time since fire of 12–23 years, we saw recovery of early successional groups: short mosses, shallow-rooted perennial grasses and annual forbs. Cover of deep and shallow-rooted perennial grasses and annual forbs increased in cover with intermediate levels of disturbance. Perennial forbs lacked a clear relationship with disturbance. Biocrusts decreased in cover with less disturbance when compared with perennial herbaceous plants but differed in sensitivities. Tall mosses were less sensitive to disturbance compared with lichens. Short mosses increased with some disturbance. Conclusions Morphological groups of biocrusts and vascular plants are eliminated with increasing variability in the size of gaps between perennials represented by the standard deviation of gaps between perennials. The inclusion of both groups in assessments of ecosystem recovery following disturbance addresses the fact that recovery of either group does not happen in isolation from the other but with interacting contributions to ecosystem functions.

Plant and Soil

Imprint of oaks on nitrogen availability and δ 15 N in California grassland-savanna: A case of enhanced N inputs?

Woody vegetation is distributed patchily in many arid and semi-arid ecosystems, where it is often associated with elevated nitrogen (N) pools and availability in islands of fertility. We measured N availability and δ 15 N in paired blue-oak versus annual grass dominated patches to characterize the causes and consequences of spatial variation in N dynamics of grassland-savanna in Sequoia-Kings Canyon National Park. We found significantly greater surface soil N pools (0–20 cm) in oak patches compared to adjacent grass areas across a 700 m elevation gradient from foothills to the savanna-forest boundary. N accumulation under oaks was associated with a 0.6‰ depletion in soil δ 15 N relative to grass patches. Results from a simple δ 15 N mass balance simulation model, constrained by surface soil N and δ 15 N measured in the field, suggest that the development of islands of N fertility under oaks can be traced primarily to enhanced N inputs. Net N mineralization and percent nitrification in laboratory incubations were consistently higher under oaks across a range of experimental soil moisture regimes, suggesting a scenario whereby greater N inputs to oak patches result in net N accumulation and enhanced N cycling, with a potential for greater nitrate loss as well. N concentrations of three common herbaceous annual plants were nearly 50% greater under oak than in adjacent grass patches, with community composition shifted towards more N-demanding species under oaks. We find that oaks imprint distinct N-rich islands of fertility that foster local feedback between soil N cycling, plant N uptake, and herbaceous community composition. Such patch-scale differences in N inputs and plant–soil interactions increase biogeochemical heterogeneity in grassland-savanna ecosystems and may shape watershed-level responses to chronic N deposition.

California

Parameterizing an aeolian erosion model for rangelands

Aeolian processes are fundamental to arid and semi-arid ecosystems, but modeling approaches are poorly developed for assessing impacts of management and environmental change on sediment transport rates over meaningful spatial and temporal scales. For model estimates to provide value, estimates of sediment flux that encapsulate intra- and inter-annual and spatial variability are needed. Further, it is important to quantify and communicate transparent estimates of model uncertainty to users. Here, we present a wind erosion and dust emission model parameterized for rangelands using a Generalized Likelihood Uncertainty Estimation framework. Modeled horizontal sediment flux was calibrated using data from five diverse grassland and shrubland sites from the USDA National Wind Erosion Research Network. Observations of wind speed, vegetation height, length of gaps between vegetation, and percent bare ground were used as model inputs. Horizontal sediment flux estimates from 10,000 independently selected parameter sets were compared to flux observations from 44 ∼ month-long collection periods to calculate a likelihood measure for each model. Results show good agreement for individual sampling periods across sites with few observations falling outside prediction bounds and a one-to-one relationship between median predictions and observations. Additionally, combined distributions of sediment flux estimates from all sample periods for a given site closely approximated the probability of observing a given flux at that site. These results suggest AERO effectively represents temporal variability in aeolian transport rates at rangeland sites and provides robust assessments suitable for assessing land health and better predicting changes in air quality and the impacts of land management activities.

Aeolian Research

Development of vegetation based soil quality indices for mineralized terrane in arid and semi-arid regions

Soil quality indices (SQIs) are often management driven and attempt to describe key relationships between above- and below-ground parameters. In terrestrial systems, indices that were initially developed and modified for agroecosystems have been applied to non-agricultural systems in increasing number. We develop an SQI in arid and semi-arid ecosystems of the Western US impacted by different types of geologic mineralization using the relationship between vegetation community parameters and soil abiotic and biotic properties. We analyze these relations in soils associated with three different mineralization types: podiform chromite, Cu/Mo porphyry, and acid-sulfate gold vein systems at four different sites in California and Nevada. Soil samples were collected from undisturbed soils in both mineralized and nearby unmineralized substrates as well as from waste rock and tailings. Aboveground net primary productivity (ANPP), canopy cover and shrub density were measured for the vegetative communities. Minimum data sets were developed based on correlations between the soil and vegetation parameters, refined using principal components analysis, scored using non-linear functions, and combined into an overall SQI. The indices are comprised of one or two microbial parameters and three to six abiotic parameters, the latter consisting of nutrients and metals. Given the preliminary development of this approach, the parameters and combinations to arrive at an SQI for a given site cannot at this time be correlated or compared with that of another site. This SQI approach provides a means of quantifying disturbed ecosystem recovery resulting from mining, and could be applied to other disturbances in a way that readily distills the information for potential use by land managers. However, severely disturbed areas with little to no aboveground biomass, such as unreclaimed tailings, have likely crossed an ecological threshold that precludes the use of this type of monitoring tool.

California

A synthesis of terrestrial mercury in the western United States: Spatial distribution defined by land cover and plant productivity

A synthesis of published vegetation mercury (Hg) data across 11 contiguous states in the western United States showed that aboveground biomass concentrations followed the order: leaves (26 μg kg − 1 ) ~ branches (26 μg kg − 1 ) > bark (16 μg kg − 1 ) > bole wood (1 μg kg − 1 ). No spatial trends of Hg in aboveground biomass distribution were detected, which likely is due to very sparse data coverage and different sampling protocols. Vegetation data are largely lacking for important functional vegetation types such as shrubs, herbaceous species, and grasses. Soil concentrations collected from the published literature were high in the western United States, with 12% of observations exceeding 100 μg kg − 1 , reflecting a bias toward investigations in Hg-enriched sites. In contrast, soil Hg concentrations from a randomly distributed data set (1911 sampling points; Smith et al., 2013a) averaged 24 μg kg − 1 (A-horizon) and 22 μg kg − 1 (C-horizon), and only 2.6% of data exceeded 100 μg kg − 1 . Soil Hg concentrations significantly differed among land covers, following the order: forested upland > planted/cultivated > herbaceous upland/shrubland > barren soils. Concentrations in forests were on average 2.5 times higher than in barren locations. Principal component analyses showed that soil Hg concentrations were not or weakly related to modeled dry and wet Hg deposition and proximity to mining, geothermal areas, and coal-fired power plants. Soil Hg distribution also was not closely related to other trace metals, but strongly associated with organic carbon, precipitation, canopy greenness, and foliar Hg pools of overlying vegetation. These patterns indicate that soil Hg concentrations are related to atmospheric deposition and reflect an overwhelming influence of plant productivity — driven by water availability — with productive landscapes showing high soil Hg accumulation and unproductive barren soils and shrublands showing low soil Hg values. Large expanses of low-productivity, arid ecosystems across the western U.S. result in some of the lowest soil Hg concentrations observed worldwide.

Science of the Total Environment

Nutrient availability affects pigment production but not growth in lichens of biological soil crusts

Recent research suggests that micronutrients such as Mn may limit growth of slow-growing biological soil crusts (BSCs) in some of the drylands of the world. These soil surface communities contribute strongly to arid ecosystem function and are easily degraded, creating a need for new restoration tools. The possibility that Mn fertilization could be used as a restoration tool for BSCs has not been tested previously. We used microcosms in a controlled greenhouse setting to investigate the hypothesis that Mn may limit photosynthesis and consequently growth in Collema tenax, a dominant N-fixing lichen found in BSCs worldwide. We found no evidence to support our hypothesis; furthermore, addition of other nutrients (primarily P, K, and Zn) had a suppressive effect on gross photosynthesis (P = 0.05). We also monitored the growth and physiological status of our microcosms and found that other nutrients increased the production of scytonemin, an important sunscreen pigment, but only when not added with Mn (P = 0.01). A structural equation model indicated that this effect was independent of any photosynthesis-related variable. We propose two alternative hypotheses to account for this pattern: (1) Mn suppresses processes needed to produce scytonemin; and (2) Mn is required to suppress scytonemin production at low light, when it is an unnecessary photosynthate sink. Although Mn fertilization does not appear likely to increase photosynthesis or growth of Collema, it could have a role in survivorship during environmentally stressful periods due to modification of scytonemin production. Thus, Mn enrichment should be studied further for its potential to facilitate BSC rehabilitation. ?? 2008 Elsevier Ltd.

Soil Biology and Biochemistry

Changes to dryland rainfall result in rapid moss mortality and altered soil fertility

Arid and semi-arid ecosystems cover ~40% of Earth’s terrestrial surface, but we know little about how climate change will affect these widespread landscapes. Like many drylands, the Colorado Plateau in southwestern United States is predicted to experience elevated temperatures and alterations to the timing and amount of annual precipitation. We used a factorial warming and supplemental rainfall experiment on the Colorado Plateau to show that altered precipitation resulted in pronounced mortality of the widespread moss Syntrichia caninervis. Increased frequency of 1.2 mm summer rainfall events reduced moss cover from ~25% of total surface cover to <2% after only one growing season, whereas increased temperature had no effect. Laboratory measurements identified a physiological mechanism behind the mortality: small precipitation events caused a negative moss carbon balance, whereas larger events maintained net carbon uptake. Multiple metrics of nitrogen cycling were notably different with moss mortality and had significant implications for soil fertility. Mosses are important members in many dryland ecosystems and the community changes observed here reveal how subtle modifications to climate can affect ecosystem structure and function on unexpectedly short timescales. Moreover, mortality resulted from increased precipitation through smaller, more frequent events, underscoring the importance of precipitation event size and timing, and highlighting our inadequate understanding of relationships between climate and ecosystem function in drylands.

Colorado Plateau