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At least 55 records · Page 3Linked to original sources

Sensitivity of fish density estimates to standard analytical procedures applied to Great Lakes hydroacoustic data

Standardized methods of data collection and analysis ensure quality and facilitate comparisons among systems. We evaluated the importance of three recommendations from the Standard Operating Procedure for hydroacoustics in the Laurentian Great Lakes (GLSOP) on density estimates of target species: noise subtraction; setting volume backscattering strength (S v ) thresholds from user-defined minimum target strength (TS) of interest (TS-based S v threshold); and calculations of an index for multiple targets (N v index) to identify and remove biased TS values. Eliminating noise had the predictable effect of decreasing density estimates in most lakes. Using the TS-based Sv threshold decreased fish densities in the middle and lower layers in the deepest lakes with abundant invertebrates (e.g., Mysis diluviana). Correcting for biased in situ TS increased measured density up to 86% in the shallower lakes, which had the highest fish densities. The current recommendations by the GLSOP significantly influence acoustic density estimates, but the degree of importance is lake dependent. Applying GLSOP recommendations, whether in the Laurentian Great Lakes or elsewhere, will improve our ability to compare results among lakes. We recommend further development of standards, including minimum TS and analytical cell size, for reducing the effect of biased in situ TS on density estimates.

Great Lakes↗

A robust calibration technique for acoustic emission systems based on momentum transfer from a ball drop

We describe a technique to estimate the seismic moment of acoustic emissions and other extremely small seismic events. Unlike previous calibration techniques, it does not require modeling of the wave propagation, sensor response, or signal conditioning. Rather, this technique calibrates the recording system as a whole and uses a ball impact as a reference source or empirical Green’s function. To correctly apply this technique, we develop mathematical expressions that link the seismic moment $M_{0}$ of internal seismic sources (i.e., earthquakes and acoustic emissions) to the impulse, or change in momentum $\Delta p $, of externally applied seismic sources (i.e., meteor impacts or, in this case, ball impact). We find that, at low frequencies, moment and impulse are linked by a constant, which we call the force‐moment‐rate scale factor $C_{F\dot{M}} = M_{0}/\Delta p$. This constant is equal to twice the speed of sound in the material from which the seismic sources were generated. Next, we demonstrate the calibration technique on two different experimental rock mechanics facilities. The first example is a saw‐cut cylindrical granite sample that is loaded in a triaxial apparatus at 40 MPa confining pressure. The second example is a 2 m long fault cut in a granite sample and deformed in a large biaxial apparatus at lower stress levels. Using the empirical calibration technique, we are able to determine absolute source parameters including the seismic moment, corner frequency, stress drop, and radiated energy of these magnitude −2.5 to −7 seismic events.

Bulletin of the Seismological Society of America↗

A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing

The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing with the different types of detection errors. We developed a hierarchical modelling framework for estimating species occupancy from automated species-detection data. We explore design and optimization of data post-processing procedures to account for detection errors and generate accurate estimates. Our proposed method accounts for both imperfect detection and false positive errors and utilizes information about both occurrence and abundance of detections to improve estimation. Using simulations, we show that our method provides much more accurate estimates than models ignoring the abundance of detections. The same findings are reached when we apply the methods to two real datasets on North American frogs surveyed with acoustic recorders. When false positives occur, estimator accuracy can be improved when a subset of detections produced by the classification algorithm is post-validated by a human observer. We use simulations to investigate the relationship between accuracy and effort spent on post-validation, and found that very accurate occupancy estimates can be obtained with as little as 1% of data being validated. Automated monitoring of wildlife provides opportunity and challenges. Our methods for analysing automated species-detection data help to meet key challenges unique to these data and will prove useful for many wildlife monitoring programs.

Methods in Ecology and Evolution↗

Can identifying discrete behavioral groups with individual-based acoustic telemetry advance the understanding of fish distribution patterns?

Identifying patterns of organismal distribution can provide valuable insights for basic and applied marine and coastal ecology because understanding where animals are located is foundational to both research and science-based conservation. Understanding variation in distributional patterns can lead to a better assessment of ecological drivers and an improved ability to predict consequences of natural and altered relationships. Here, our purpose is to explore if quantifying coexisting groups of individual fish predators advances our understanding of field distribution patterns. Toward this end, we quantified locations of 59 acoustically tagged striped bass ( Morone saxatilis) within a 26-stationary unit telemetry receiver array in Plum Island Estuary (PIE), MA, United States. We then used cluster analyses on spatial and temporal-spatial metrics from this dataset to (1) assess if distinct groups of individuals coexisted, (2) quantify group characteristics, and (3) test associations between groups and distribution (e.g., physical site type and region). Based on multiple lines of evidence, we identified four groups of striped bass with different space use patterns that persisted across seasons (summer and fall). Similar-sized striped bass clustered at spatial and temporal scales at which individuals within distinct groups could, and did, physically overlap. In addition, distributional groups were linked to components of physical site type and region suggesting that discrete groups of individuals can interact differently with the environment within the same ecological system. The identification of these distinct groups of individuals creates a baseline from which to explore further ecological implications of grouping behavior for research and conservation in geographically large, temporally dynamic, and spatially heterogeneous marine and coastal environments.

Massachusetts↗

QRev—Software for computation and quality assurance of acoustic doppler current profiler moving-boat streamflow measurements—Technical manual for version 2.8

The software program, QRev applies common and consistent computational algorithms combined with automated filtering and quality assessment of the data to improve the quality and efficiency of streamflow measurements and helps ensure that U.S. Geological Survey streamflow measurements are consistent, accurate, and independent of the manufacturer of the instrument used to make the measurement. Software from different manufacturers uses different algorithms for various aspects of the data processing and discharge computation. The algorithms used by QRev to filter data, interpolate data, and compute discharge are documented and compared to the algorithms used in the manufacturers’ software. QRev applies consistent algorithms and creates a data structure that is independent of the data source. QRev saves an extensible markup language (XML) file that can be imported into databases or electronic field notes software. This report is the technical manual for version 2.8 of QRev.

Open-File Report↗

Topographic stress perturbations in southern Davis Mountains, west Texas 1. Polarity reversal of principal stresses

We have applied a previously developed analytical stress model to interpret subsurface stress conditions inferred from acoustic televiewer logs obtained in two municipal water wells located in a valley in the southern Davis Mountains near Alpine, Texas. The appearance of stress-induced breakouts with orientations that shift by 90° at two different depths in one of the wells is explained by results from exact solutions for the effects of valleys on gravity and tectonically induced subsurface stresses. The theoretical results demonstrate that above a reference depth termed the hinge point, a location that is dependent on Poisson's ratio, valley shape, and magnitude of the maximum horizontal tectonic stress normal to the long axis of the valley, horizontal stresses parallel to the valley axis are greater than those normal to it. At depths below this hinge point the situation reverses and horizontal stresses normal to the valley axis are greater than those parallel to it. Application of the theoretical model at Alpine is accommodated by the fact that nearby earthquake focal mechanisms establish an extensional stress regime with the regional maximum horizontal principal stress aligned perpendicular to the valley axis. We conclude that the localized stress field associated with a valley setting can be highly variable and that breakouts need to be examined in this context when estimating the orientations and magnitudes of regional principal stresses.

Texas↗

Sounds of Atlantic sturgeon spawning: First description and opportunities for riverine endangered species conservation with passive acoustic monitoring

Effective recovery plans for endangered species rely on insights into species’ ecology to identify risks and develop population recovery strategies. Data gaps pose challenges for many species of conservation concern, particularly those with cryptic behaviors or that occupy difficult-to-access habitats. Sounds produced by these species offer an effective means of observing many such marine and aquatic species, and for this reason, passive acoustic monitoring has emerged as an important study and assessment approach in marine systems. This approach is only just beginning to be applied for aquatic species monitoring in freshwater habitats. Atlantic sturgeon Acipenser oxyrinchus , a species of conservation concern along the US East Coast, remains poorly understood due to persistent data gaps despite years of conservation efforts. While sounds have been described for other sturgeons, sounds from Atlantic sturgeon have not yet been reported. Here, we characterized acoustic cues associated with Atlantic sturgeon in the Hudson River, New York, USA, and identified a low-frequency (44 Hz peak frequency) signal strongly correlated with the occurrence of telemetry-tagged adults which enter the river to spawn. We corroborated these efforts with recordings of captive Atlantic sturgeon, in which we detected the same sound type during a spawning period. Our findings provide an opportunity to develop passive acoustic monitoring strategies for Atlantic sturgeon, offering a non-invasive tool for understanding the spatiotemporal distribution of spawning activity across their range. We demonstrate potential applications of passive acoustic monitoring to inform sturgeon conservation and management, including characterizing habitat use, identifying cross-species interactions, and providing abundance indices.

New York↗

Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

Acoustic sampling methods are becoming increasingly important in biological monitoring. Sound attenuation is one of the most important dynamics affecting the utility of acoustic data as it directly affects the probability of detection of individuals by acoustic sensor arrays and especially the localization of acoustic signals necessary in telemetry studies. Therefore, models of sound attenuation are necessary to make efficient use of acoustic data in ecological monitoring and assessment applications. Models of attenuation in widespread use are based on Euclidean distance between source and sensor, which is justified under spherical attenuation of sound waves in homogeneous environments. In this paper, I develop a model of sound attenuation based on a non‐Euclidean cost‐weighted distance metric which contains attenuation coefficients that characterize the attenuation of sound due to environmental heterogeneity in the vicinity of an acoustic sensor array. I show that parameters of the proposed attenuation model can be estimated by maximum likelihood using experimental data from an array of fixed sources, thus allowing investigators who use bioacoustic methods to devise explicit models of sound attenuation in situ and apply them to localization of sources and density estimation. In addition, drawing on analogy with spatial capture–recapture models, I argue that parameters of the non‐Euclidean model of attenuation can be estimated when source locations are unknown . Thus, the models can be applied to real field studies which require estimation of attenuation parameters or localization of signals. Models of heterogeneous sound attenuation allow more accurate descriptions of acoustic monitoring data, and therefore should produce more accurate estimates of ecological parameters of interest, including source locations, density, and movement trajectories. Moreover, the ability to test specific hypotheses about the effects of habitat and landscape structure on sound attenuation can improve the design of acoustic monitoring arrays and lead to more efficient deployment of acoustic sensing technology.

Methods in Ecology and Evolution↗

The influence of shallow subsurface properties on particle motion in acoustic-seismic coupling

Atmospheric acoustic waves transmit energy into the solid Earth through air-to-ground coupling. These waves are recorded by seismic sensors and provide insight into both atmospheric phenomena and subsurface properties. Interpreting these signals is often challenging because they are modulated by subsurface structure and the incidence angle of the acoustic wave. This study examines acoustic--seismic coupling generated by the 2012 Camp Minden Explosion, which was recorded by hundreds of seismoacoustic stations. We apply a novel technique to quantify the seismic particle motion, model coupled waves with a propagator matrix approach, and apply a Bayesian inversion to infer properties of the shallow subsurface. Our analysis reveals that prograde motion is widespread and focused in low shear-wave velocity regions, such as the Mississippi Embayment, and retrograde motion is more common in higher shear-velocity areas. Inversion results at some stations produce plausible subsurface models with strong waveform fits, while inversions at other sites are less successful. These results indicate prograde particle motion in air-to-ground coupled waves is more prevalent than previously recognized and may serve as a diagnostic for shallow velocity structure. Our comprehensive modeling and inversion framework provides a potential method to extract layered near-surface properties from acoustic-seismic coupling observations.

Seismica↗

Uncertainty in detection of volcanic activity using infrasound arrays: Examples from Mt. Etna, Italy

The injection of gas and pyroclastic material from volcanic vents into the atmosphere is a prolific source of acoustic waves. Infrasound arrays offer efficient, cost-effective, and near real-time solutions to track the rate and intensity of surface activity at volcanoes. Here, we present a simple framework for the analysis of acoustic array data, based on least-squares beamforming, that allows to evaluate the direction and speed of propagation of acoustic waves between source and array. The algorithms include a new and computationally efficient approach for quantitative assessment of the uncertainty on array measurements based on error propagation theory. We apply the algorithms to new data collected by two 6-element infrasound arrays deployed at Mt. Etna during the period July–August 2019. Our results demonstrate that the use of two infrasound arrays allowed detecting and tracking acoustic sources from multiple craters and active vents associated with degassing and ash-rich explosions, vigorous and frequent Strombolian activity, opening of new eruptive fractures and emplacement of lava flows. Finally, we discuss the potential use of metrics based on infrasound array analyses to inform eruption monitoring operations and early warning at volcanoes characterized by episodic intensification of activity.

Mt. Etna↗

Listening for extinction: Range-wide occupancy highlights critical risks and priorities for northern spotted owls

The northern spotted owl ( Strix occidentalis caurina ) continues to decline across its range, threatened by habitat disturbances and invasive barred owls ( Strix varia ). We conducted a range-wide spotted owl occupancy assessment using 2.1 million h of passive acoustic recordings from 4081 survey stations within 1027 randomly selected 5-km 2 hexagons across six physiographic regions. Applying multistate occupancy models, we estimated probabilities of landscape use (by at least one northern spotted owl) and pair occupancy (occupied by both a male and a female), while accounting for imperfect and sex-biased detection probability. Detection probability of pairs was low in most regions, primarily due to undetected females, but increased with survey effort. If management decisions can only be made when there is a high probability of detecting both sexes when they are present, then longer surveys are one approach to support the decisions. Landscape use and pair occupancy were positively associated with old-growth forest structure and topographic diversity. We also found a pronounced latitudinal gradient in spotted owl landscape use rates with estimated mean landscape use of 0.17 (SE = 0.03) and 0.16 (SE = 0.02) in the two most northern regions, and 0.54 (SE = 0.04) and 0.52 (SE = 0.05) in the two most southern regions. Pair occupancy rates were higher in southern regions (0.29, SE = 0.03, 0.43, SE = 0.05) and very low in northern regions (0.04, SE = 0.01, 0.03, SE = 0.01). In contrast to spotted owls, barred owls were detected in 90% of northern hexagons and 50% of southern hexagons, and barred owl calling intensity was over eight times higher than spotted owls. These results highlight extinction risks in several regions and suggest that management actions, such as spatially targeted barred owl control and protection of structurally complex habitats, have a narrow temporal window in which they can be effective in lowering the probability of regional extirpations. We generated predictive maps of landscape use and pair occupancy, which could help guide regional conservation strategies. This study demonstrates how passive acoustic monitoring and machine learning can be used for broad-scale ecological monitoring, identifying extinction risk thresholds, supporting adaptive management, and improving conservation outcomes for wide-ranging and elusive species that can reliably be detected through unique vocalizations.

California, Oregon, Washington↗

Global positioning system and associated technologies in animal behaviour and ecological research

Biologists can equip animals with global positioning system (GPS) technology to obtain accurate (less than or equal to 30 m) locations that can be combined with sensor data to study animal behaviour and ecology. We provide the background of GPS techniques that have been used to gather data for wildlife studies. We review how GPS has been integrated into functional systems with data storage, data transfer, power supplies, packaging and sensor technologies to collect temperature, activity, proximity and mortality data from terrestrial species and birds. GPS 'rapid fixing' technologies combined with sensors provide location, dive frequency and duration profiles, and underwater acoustic information for the study of marine species. We examine how these rapid fixing technologies may be applied to terrestrial and avian applications. We discuss positional data quality and the capability for high-frequency sampling associated with GPS locations. We present alternatives for storing and retrieving data by using dataloggers (biologging), radio-frequency download systems (e.g. very high frequency, spread spectrum), integration of GPS with other satellite systems (e.g. Argos, Globalstar) and potential new data recovery technologies (e.g. network nodes). GPS is one component among many rapidly evolving technologies. Therefore, we recommend that users and suppliers interact to ensure the availability of appropriate equipment to meet animal research objectives.

Philosophical Transactions of the Royal Society B:↗

Combining models of the critical streakline and the cross-sectional distribution of juvenile salmon to predict fish routing at river junctions

Because fish that enter the interior Delta have poorer survival than those emigrating via the Sacramento River, understanding the mechanisms that drive entrainment rates at side channel junctions is critically important for the management of imperiled juvenile salmon. Here, we implement a previously proposed process-based conceptual model to study entrainment rates based on three linked elements: the entrainment zone, critical streakline, and cross-sectional distribution of fish. The critical streakline is the location along a channel cross-section immediately upstream of a junction that forms the spatial divide between parcels of water that enter a side channel or remain in the main channel. The critical streakline therefore divides the main channel into entrainment zones within which fish would likely enter each channel. Combined with information about the cross-sectional distribution of fish upstream of a junction, this conceptual model provides a means to predict fish entrainment into each channel. To apply this conceptual model, we combined statistical models of the critical streakline, the cross-sectional distribution of acoustic tagged juvenile Chinook salmon, and their probability of entrainment into Georgiana Slough. We fit joint beta regression and logistic regression models to acoustic telemetry data gathered in 2011 and 2012 to estimate the cross-sectional distribution of fish upstream of the junction, and to estimate the probability of entrainment for fish on either side of the critical streakline. We show that entrainment rates can be predicted by understanding how the combination of critical streakline position and cross-sectional distribution of fish co-vary as a function of environmental covariates. By integrating over individual positions and entrainment fates to arrive at population-level entrain probability in relation to environmental covariates, our model offers managers a simple but powerful tool to evaluate how alternative actions affect migrating fish.

California↗

Seismo-acoustic characterization of Mount Cleveland volcano explosions

Volcanic explosions can produce large, ash-rich plumes that pose great hazard to aviation, yet may often have few precursory geophysical signals. Mount Cleveland is one of the most active volcanoes in the Aleutian Arc, Alaska (United States) with at least 65 explosions between December 2011 and June 2020. We characterize the seismo-acoustic signals from explosions at Mount Cleveland over a period of 4 years starting in 2014 when the permanent local instrumentation was installed. While the seismic explosion signals are similar, the acoustic signals vary between explosions. Some explosion acoustic waveforms exhibit a single main compressional phase while other waveforms have multiple compressions. The time lag between seismic and acoustic arrivals varies considerably (up to 2.20 s) at a single station ∼3 km from the vent, suggesting a change in propagation path for the signals between explosions. We apply a variety of methods to explore the potential contributions to this variable time lag from atmospheric conditions, nonlinear propagation, and source depth within the conduit. This variable time lag has been observed elsewhere, but explanations are often unresolved. Our results indicate that while changes in atmospheric conditions can explain some of the variation in acoustic arrival time relative to the seismic signal arrivals, substantial residual time lag variations often still exist. Additionally, nonlinear propagation modeling results do not yield a change in the onset time of the acoustic arrival with source amplitudes comparable to (and larger) than Cleveland explosions. We find that a spectrum of seismic cross-correlation values between events and particle motion dip angles suggests that a varying explosion source depth within the conduit likely plays a dominant role in the observed variations in time lag. Explosion source depths appear to range from very shallow depths down to ∼1.5–2 km. Understanding the seismo-acoustic time lag and the subsequent indication of a variable explosion source depth may help inform explosion source modeling for Mount Cleveland, which remains poorly understood. We show that even with a single co-located seismic and acoustic sensor that does not always remain on scale, it is possible to provide meaningful interpretations of the explosion source depth which may help monitoring agencies understand the volcanic system.

Alaska↗

Simulating the migration dynamics of juvenile salmonids through rivers and estuaries using a hydrodynamically driven enhanced particle tracking model

Juvenile salmonids migrate hundreds of kilometers from their natal streams to mature in the ocean. Throughout this migration, they respond to environmental cues such as local water velocities and other stimuli to direct and modulate their movements, often through heavily modified riverine and estuarine habitats. Management strategies in an uncertain future of climate change and altered land use regimes depend heavily on being able to reliably predict their ocean entry timings, route use, and survival rates through rivers and estuaries. We developed a spatially-explicit agent-based model of fish movement in response to hydrodynamic flows that uses movement dynamics gleaned from multi-dimensional tracking datasets of acoustically tagged juveniles moving through an urbanized, branched tidal estuary. We demonstrate how such models can be calibrated, and we apply it to the Sacramento-San Joaquin Delta in Central California. The quality of the out-of-sample validation of the model to predict juvenile salmon survival and route selection indicates that the model is versatile and flexible enough to be used in novel hydroclimatological conditions.

California↗

Results of the collaborative Lake Ontario bloater restoration stocking and assessment, 2012–2020

Bloater, Coregonus hoyi , are deepwater planktivores native to the Laurentian Great Lakes and Lake Nipigon. Interpretations of commercial fishery time series suggest they were common in Lake Ontario through the early 1900s but by the 1950s were no longer captured by commercial fishers. Annual bottom trawl surveys that began in 1978 and sampled extensively across putative bloater habitat only yielded one individual (1983), suggesting that the species had been locally extirpated. In 2012, a multiagency restoration program stocked bloater into Lake Ontario from gametes collected in Lake Michigan. From 2012 to 2020, 1,028,191 bloater were stocked into Lake Ontario. Bottom trawl surveys first detected stocked fish in 2015, and through 2020 ten bloater have been caught (total length mean = 129 mm, s.d. = 44 mm, range: 96–240 mm). Hatchery applied marks and genetic analyses confirmed the species identification and identified stocking location for some individuals. Trawl capture locations and acoustic telemetry suggested that stocked fish dispersed throughout the main lake within months or sooner, and the depth distribution of recaptured bloater was similar to historic distributions in Lake Ontario and other Great Lakes. Predicted bloater trawl catches, based on modeled population abundance and trawl survey efficiency, were similar to observed catches, suggesting that post-stocking survival is less than 20% and contemporary bottom trawl surveys can quantify bloater abundance at low densities and track restoration.

Lake Ontario↗

Use of remote-sensing techniques to survey the physical habitat of large rivers

Remote-sensing techniques that can be used to quantitatively characterize the physical habitat in large rivers in the United States where traditional survey approaches typically used in small- and medium-sized streams and rivers would be ineffective or impossible to apply. The state-of-the-art remote-sensing technologies that we discuss here include side-scan sonar, RoxAnn, acoustic Doppler current profiler, remotely operated vehicles and camera systems, global positioning systems, and laser level survey systems. The use of these technologies will permit the collection of information needed to create computer visualizations and hard copy maps and generate quantitative databases that can be used in real-time mode in the field to characterize the physical habitat at a study location of interest and to guide the distribution of sampling effort needed to address other habitat-related study objectives. This report augments habitat sampling and characterization guidance provided by Meador et al. (1993) and is intended for use primarily by U.S. Geological Survey National Water Quality Assessment program managers and scientists who are documenting water quality in streams and rivers of the United States.

Report↗

White-nose Syndrome and environmental correlates to landscape-scale bat presence

Over the past 13 years, White-nose Syndrome (WNS) has caused North American bat population declines and shifted community structure towards species less or unaffected by the disease. Mist-netting, acoustic surveys, and cave count data have been used to document changes in bat presence and activity through site-specific, pre- and post-WNS studies. Management and survey guidance often must be applied at a combined landscape and site-specific scale. Our objective was to explore the relationships among WNS impact, influence of available hibernacula, and environmental factors for the nightly presence of 3 WNS-affected bats: the Indiana bat ( Myotis sodalis ), northern long-eared bat ( M. septentrionalis ), and big brown bat ( Eptesicus fuscus ). We used recordings from 10 acoustic monitoring study areas, each with 3 survey locations across the states of Virginia, West Virginia, Ohio and Kentucky to assess changes in nightly bat presence during the summer of 2017. There were significant positive and negative correlates of broad land-cover categories for presence of all 3 bat species. Our findings also corroborated trends in abundance and distribution patterns found in prior, smaller-scale studies, supporting the relevance of land cover categories in a large-scale acoustic monitoring framework. We observed a negative association between WNS impact-years and nightly northern long-eared bat presence, but low occurrence and patchy distribution reduced our ability to infer strong relationships. Big brown bat presence showed a significant positive relationship with WNS occurrence on the landscape, providing evidence that big brown bats are maintaining populations after years of exposure. Indiana bats were the least-documented species, limiting the strength of our conclusions, but we did observe significant temporal patterns in nightly presence, with higher probabilities of presence earlier in the summer. Our results show the potential efficacy of using a WNS impact metric to predict summer bat presence, inform current U.S. Fish and Wildlife Service acoustic monitoring guidelines, and highlight which environmental variables are relevant for large-scale acoustic monitoring.

Wildlife Society Bulletin↗