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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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At least 523 records · Page 29Linked to original sources
USGS1982

Habitat Suitability Index Models: Marten

Habitat preferences and species characteristics of the pine marten (Martes americana) are described in this publication. It is one of a series of Habitat Suitability Index (HSI) models and was developed through an analysis of available scientific data on the species-habitat requirements of the pine marten. Habitat use information is presented in a review of the literature, followed by the development of a HSI model. The model is presented in three formats: graphic, word and mathematical. Suitability index graphs quantify the species-habitat relationship. These data are then synthesized into a model which is designed to provide information for use in impact assessment and habitat management activities.

FWS/OBS↗
USGS1982

Habitat Suitability Index Models: Yellow warbler

Habitat preferences of the yellow warbler (Dendroica petechia) are described in this publication. It is one of a series of Habitat Suitability Index (HSI) models and was developed through an analysis of available information on the species-habitat requirements of the species. Habitat use information is presented in a review of the literature, followed by the development of an HSI model, designed for use in impact assessment and habitat management activities.

FWS/OBS↗
USGS1984

Habitat Suitability Index Models and Instream Flow Suitability Curves: Spotted bass

The Habitat Suitability Index (HSI) models presented in this publication aid in identifying habitat variable important to the growth and survival of spotted bass (Micropterus punctulatus). Facts, ideas, and concepts obtained from the research literature and expert reviews are synthesized and presented in a format that can be used for impact assessment. The models are hypotheses of species-habitat relationships, and model users should recognize that the degree of veracity of the HSI model, SI graphs, and assumptions will vary according to geographical area and the extent of the data base for individual variables. A brief discussion of selected Suitability Index (SI) curves as used in the Instream Flow Incremental Methodology (IFIM), and a discussion of SI curves available for the IFIM analysis of Spotted bass habitat are also included.

FWS/OBS↗
USGS2020

Evaluating contributions of recent tracking-based animal movement ecology to conservation management

The use of animal-born sensors for location-based tracking and bio-logging in terrestrial systems has expanded dramatically in the past 10 years. This rapid expansion has generated new data on how animals interact with and respond to variation in their environment, resulting in important ecological, physiological, and evolutionary insights. Although understanding the finer details of animal locations has important management relevance, applied studies are not prominent in the movement ecology literature. This is despite the long history of applied studies of animal movement and the urgent and growing need for evidence-based conservation guidance, especially in the challenging field of human-wildlife interactions. The goal of this review is to evaluate the realized contribution of tracking-based animal movement ecology to solving specific conservation problems, and to identify barriers that may hinder expansion of that contribution. To do this, we (a) briefly review the history and technologies used in animal tracking and bio-logging, (b) use a series of literature searches to evaluate the frequency with which movement ecology studies are designed to solve specific conservation problems, and (c) use this information to identify challenges that may limit the applied relevance of the field of movement ecology, and to propose pathways to expand that applied relevance. Our literature review quantifies the limited extent to which research in the field of movement ecology is designed to solve specific conservation problems, but also the fact that such studies are slowly becoming more prevalent. We discuss how barriers that limit application of these principles are likely due to constraints imposed by the types of data used commonly in the field. Problems of scale mismatch, error compounding, and data paucity all create challenges that are relevant to the field of movement ecology but may be especially pertinent in applied situations. Finding solutions to these problems will create new opportunity for movement ecologists to contribute to conservation science.

Frontiers in Ecology and Evolution↗
USGS2024

Existing evidence on the effects of climate variability and climate change on ungulates in North America: A systematic map

Background Climate is an important driver of ungulate life-histories, population dynamics, and migratory behaviors. Climate conditions can directly impact ungulates via changes in the costs of thermoregulation and locomotion, or indirectly, via changes in habitat and forage availability, predation, and species interactions. Many studies have documented the effects of climate variability and climate change on North America’s ungulates, recording impacts to population demographics, physiology, foraging behavior, migratory patterns, and more. However, ungulate responses are not uniform and vary by species and geography. Here, we present a systematic map describing the abundance and distribution of evidence on the effects of climate variability and climate change on native ungulates in North America. Methods We searched for all evidence documenting or projecting how climate variability and climate change affect the 15 ungulate species native to the U.S., Canada, Mexico, and Greenland. We searched Web of Science, Scopus, and the websites of 62 wildlife management agencies to identify relevant academic and grey literature. We screened English-language documents for inclusion at both the title and abstract and full-text levels. Data from all articles that passed full-text review were extracted and coded in a database. We identified knowledge clusters and gaps related to the species, locations, climate variables, and outcome variables measured in the literature. Review findings We identified a total of 674 relevant articles published from 1947 until September 2020. Caribou ( Rangifer tarandus ), elk ( Cervus canadensis ), and white-tailed deer ( Odocoileus virginianus ) were the most frequently studied species. Geographically, more research has been conducted in the western U.S. and western Canada, though a notable concentration of research is also located in the Great Lakes region. Nearly 75% more articles examined the effects of precipitation on ungulates compared to temperature, with variables related to snow being the most commonly measured climate variables. Most studies examined the effects of climate on ungulate population demographics, habitat and forage, and physiology and condition, with far fewer examining the effects on disturbances, migratory behavior, and seasonal range and corridor habitat. Conclusions The effects of climate change, and its interactions with stressors such as land-use change, predation, and disease, is of increasing concern to wildlife managers. With its broad scope, this systematic map can help ungulate managers identify relevant climate impacts and prepare for future changes to the populations they manage. Decisions regarding population control measures, supplemental feeding, translocation, and the application of habitat treatments are just some of the management decisions that can be informed by an improved understanding of climate impacts. This systematic map also identified several gaps in the literature that would benefit from additional research, including climate effects on ungulate migratory patterns, on species that are relatively understudied yet known to be sensitive to changes in climate, such as pronghorn ( Antilocapra americana ) and mountain goats ( Oreamnos americanus ), and on ungulates in the eastern U.S. and Mexico.

Environmental Evidence↗
USGS2015

Pre-fieldwork surveys

In sea-level studies, initial surveys at the office or library can increase a project’s likelihood of success. Pre-fieldwork surveys should begin with a thorough review of prior research literature that appraises available data, identifies data gaps, and places the project objectives into a broader scientific context. Whereas peer reviewed journal articles may contain a wealth of research findings, often the most useful maps, historical documents, images, and other data critical for sea-level research are discovered by searching government files, libraries, museums, unpublished reports, or, increasingly, online digital data collections.

Book chapter↗
USGS2010

Recent advancements in amphibian ecotoxicology

When the first edition of Ecotoxicology of Amphibians and Reptiles was published in 2000, I reviewed the state of the literature from 1972 through 1998 (Sparling et al. 2000). That review covered 11 271 contaminant citations listed in Wildlife Review and Sports Fisheries Abstracts published by the US Fish and Wildlife Service. Among its findings, only 2.7% of the cited papers were on amphibians and 1.4% on reptiles. This equated to an average annual rate of 11.5 citations for amphibians and 6 for reptiles, although the distribution of citations was not homogeneous through the years. In contrast, 61.8%, or 280, contaminant citations per year were on fish. Among the amphibian citations, most focused on effects, 23% dealt with metals, 22% with acid precipitation, and 19% with nonchlorinated pesticides. The remaining 38% covered all of the other contaminants of interest at that time. Almost all of the citations on reptiles dealt exclusively with residues, and turtles (Chelonia) were overrepresented compared to the percent of reptilian species comprised by this order. The most important categories of contaminants included metals (24%), organochlorine pesticides (23%), and polychlorinated biphenyls (PCBs) (19%), all persistent pollutants.

Book chapter↗
USGS2023

Appendix D: Synthesis element 1 (revised): Water temperature effects on fisheries and stream health in nontidal waters

A limited review of relevant scientific literature related to temperature sensitivities of fish species, stream health indicators, and any related geospatial information was conducted. Based on this review, we provide a syntheses of information related to nontidal waters in the Chesapeake Bay Rising stream temperatures will have a range of impacts on nontidal aquatic ecosystems. Cold headwaters and associated species like brook trout and sculpin are especially vulnerable to higher stream temperatures. Efforts could be taken to identify and protect high quality resilient cold headwater brook trout (Salvelinus fontinalis) habitat. More information on groundwater impacts on stream temperatures and ecologically relevant temperature thresholds for species of concern could help resource managers identify temperature resilient habitats and populations. A vulnerability assessment could be valuable to better understand the drivers and stressors of rising stream temperatures, their effects on aquatic resources, and the risk to fish and other aquatic species. Further research could help in developing and fully vetting a complete list of cold/cool water benthic macroinvertebrate taxa and freshwater mussel taxa that are vulnerable to temperature change in the Chesapeake watershed.

Report↗
USGS2024

How diverse is the toolbox? A review of management actions to conserve or restore coregonines

Over the past centuries, coregonines have been exposed to a range of stressors that have led to extinctions, extirpations, and speciation reversals. Given that some populations remain at risk and fishery managers have begun restoring coregonines where they have been extirpated, we reviewed the primary and gray literature to describe the diversity of coregonine restoration or conservation actions that have been previously used. Although stocking of hatchery-reared fish has been commonly used for supplementing existing coregonine fisheries, we considered stocking efforts only with specifically conservation or restoration goals. Likewise, conservation-driven efforts of translocation were not widespread, except in the United Kingdom for the creation of refuge populations to supplement the distribution of declining stocks. Habitat restoration efforts have occurred more broadly and have included improving spawning habitat, connectivity, or nutrient concentrations. Although harvest regulations are commonly used to regulate coregonine fisheries, we found fewer examples of the creation of protected areas or outright closures. Finally, interactions with invasive species can be a considerable stressor, yet we found relatively few examples of invasive species control undertaken for the direct benefit of coregonines. In conclusion, our review of the literature and prior Coregonid symposia revealed relatively limited direct emphasis on coregonine conservation or restoration relative to more traditional fishery approaches ( e.g. , supplementation of fisheries, stock assessment) or studying life history and genetics. Ideally, by providing this broad review of conservation and restoration strategies, future management efforts will benefit from learning about a greater diversity of potential actions that could be locally applied.

International Journal of Limnology↗
USGS2022

Toward scoping reviews of individual bird species

Scoping reviews, in which the literature on a given topic is systematically collated and summarized, aid literature searches and highlight knowledge gaps on a given topic, thus hastening scientific progress and informing conservation efforts. Because much research and conservation is targeted at the species level, ornithology and bird conservation would benefit from scoping reviews of individual species. We present and apply a framework for scoping reviews for three disparate raptor species: California Condor Gymnogyps californianus , Harpy Eagle Harpia harpyja and Gyrfalcon Falco rusticolus . We consulted expert panels to develop appropriate search strings and lists of essential literature, i.e. ‘benchmark articles’. We searched Web of Science, Scopus and Google Scholar. Searches for California Condor, Harpy Eagle and Gyrfalcon returned 268, 138 and 343 articles, respectively, that discuss, review or collect empirical data for the focal species. Our searches returned all benchmark articles identified by species experts, indicating that the searches captured the most important work on each species. We coded each study according to the topic addressed, country and month in which data were collected. We also coded threats, stresses and conservation actions addressed by studies, following definitions used by the International Union for the Conservation of Nature (IUCN) during Red List assessments. Literature summaries for each species include the number of studies addressing certain topics, monthly timing of research and global maps of research focus. Our coding scheme revealed important knowledge gaps for each species. Effects of conservation actions on wild individuals were less studied for California Condors. Harpy Eagles were less studied outside of Brazil and Panama, and Gyrfalcons were less studied outside of their breeding season. Scoping reviews of the world's bird species would help to identify critical knowledge gaps, thereby aiding the global effort to assuage the sixth mass extinction.

Ibis↗
USGS2009

Satellite telemetry of marine megavertebrates: The coming of age of an experimental science

Wildlife telemetry research has expanded greatly in the last 2 decades, with the application of satellite tracking and archival logging technologies to study the ecology and conservation of marine mammals, birds, fishes, and turtles. Widespread and expanding use of satellite tracking to study movements and habitats of marine megavertebrates warrants a review of progress to date and a discussion of challenges facing this rapidly evolving research field. To this end, we reviewed the satellite telemetry literature of air-breathing marine taxa (i.e. birds, mammals, turtles) over the 20 yr time period from 1987 to 2006. This review yielded 92 studies with a wide taxonomic representation: 47 seabirds, 23 sea turtles, and 22 marine mammals. Here we critically evaluate these articles to assess progress in satellite tracking of marine megavertebrates in terms of (1) objectives and approach, (2) experimental design, and (3) reporting of results. The overall trends revealed increases in the duration and scope of tracking studies, yet improvements on experimental design and reporting are needed to facilitate comparisons across studies and species. While inherent ecological differences influence the focus and methods of taxon-specific studies, this review highlights specific areas in need of improvement and provides general suggestions for future tracking studies of marine megavertebrates.

Endangered Species Research↗
USGS2019

Evaluation of a microsatellite panel for use across North American populations of white-tailed deer (Odocoileus virginianus)

Background Microsatellite loci have been used extensively over the past two decades to study the genetic characteristics of non-model species. The relative ease of microsatellite development and ability to adapt markers from related species has led to the proliferation of available markers, particularly for those species that are intensively studied and managed. Because it is often infeasible to genotype individuals across all available loci, researchers generally rely on subsets of markers. Marker choice and genotyping errors can bias inferences made using disparate suites of microsatellite loci. This can limit comparative and collaborative efforts among research groups and has been a primary motivation for panel standardization efforts. Here, we develop a methodology for identifying a suite of markers from previous literature that can be generalizable across the range of commonly studied organisms. We specifically focus on producing a broadly applicable microsatellite panel for white-tailed deer ( Odocoileus virginianus ). Results We reviewed microsatellite panels from 58 previous or ongoing projects and identified a total of 106 candidate loci. We developed a multiplex protocol and evaluated the efficacy of 17 of the most commonly used loci using 720 DNA samples collected from the Mid-Atlantic region of the United States, an area where few previous studies were conducted. Amplification errors were detected in six of these loci. The properties of the remaining 11 loci suggest that they are applicable for many common research objectives. Specifically, this panel is highly polymorphic (eight to 20 alleles per locus, polymorphic information criterion = 0.492 to 0.917), exhibits low frequencies of genotyping errors (null alleles < 10%), and is relatively easy to interpret with the aid of allele binning software. Conclusions We were able to identify a panel of microsatellite markers that show potential for broad applicability over the geographic range of white-tailed deer, as evidenced by the distribution of previous studies that utilized them. Validation in an additional region confirmed this. These results suggest that marker standardization and evaluation procedures based on literature reviews offers an effective method for identifying consolidated panels for future studies. This simple procedure addresses previous concerns about the infeasibility of standardization efforts.

Maryland, Pennsylvania, Virginia↗
USGS2000

Recreation impacts and management in wilderness: A state-of-knowledge review

This paper reviews the body of literature on recreation resource impacts and their management in the United States, with a primary focus on research within designated wildernesses during the past 15 years since the previous review (Cole 1987b). Recreation impacts have become a salient issue among wilderness scientists, managers and advocates alike. Studies of recreation impacts, referred to as recreation ecology, have expanded and diversified. Research has shifted its focus more towards questions driven by wilderness and park planning frameworks such the Limits of Acceptable Change and the Visitor Experience and Resource Protection. This paper begins by providing an overview of recreation impacts and their significance in wilderness, followed by a review of research approaches and methods. Major findings from recent studies are summarized. The contribution of this knowledge base to management decisionmaking and practices is examined. The paper concludes with a discussion of major knowledge gaps and suggested areas for future research.

Book chapter↗
USGS2001

Rodentia and lagomorpha

This comprehensive review examines the extensive literature on wild rodents and lagomorphs as biomonitors of environmental contamination. This chapter covers studies dealing with exposure and effects of environmental contaminants on rodent and lagomorph species, including pesticides (organochlorines, organophosphorus and carbamate compounds, herbicides, plant growth regulators, fungicides, and rodenticides), other organic chemicals, metals, radionuclides, and other miscellaneous contaminants. Many research needs become evident when reviewing ecotoxicological data for rodents and lagomorphs, the most striking being the paucity of information on rodent families other than Muridae (mice and rats). While our ability to qualitatively extrapolate effects observed in laboratory studies to field situations is good for a variety of contaminants, quantitative predictions of dose-response relationships are poor because inter-specific variation and differences in exposure patterns between laboratory and wild species to toxicants are for the most part unknown. More sophisticated comparative toxicity studies need to be undertaken that build on previous work in order to develop a database of information, to account for and model differences in exposure pathways, to document interactions among multiple stressors, to generate data establishing thresholds, critical concentrations, and diagnostic guidelines, and even to develop physiologically-based toxicokinetic models. Such efforts may enhance our ability to predict effects on wild populations, including threatened and endangered species.

Book chapter↗
USGS2007

The state of the art in raptor electrocution research: A global review

We systematically reviewed the raptor electrocution literature to evaluate study designs and methods used in raptor electrocution research, mitigation, and monitoring, emphasizing original research published in English. Specifically, we wondered if three decades of effort to reduce raptor electrocutions has had positive effects. The majority of literature examined came from North America, western Europe, and South Africa. In spite of intensive and often sustained effort by industry and governments across three continents for 30 years, reductions in the incidence of electrocution have been demonstrated in only a few studies. Reliable rate estimates of electrocution mortality generally are unavailable, with some exceptions. Nearly half of 110 studies we analyzed in detail were retrospective reviews of historical mortality records, banding data, or results of necropsies on dead birds received at pathology and veterinary facilities. Among prospective studies, less than half used unbiased approaches to sampling and many did not provide enough detail to assess the sampling design used. At this time, few researchers can demonstrate the reliability of standardized retrofitting procedures or the effectiveness of monitoring techniques. Future progress in reducing raptor mortalities on power lines will benefit from properly designed studies that generate rate estimates of mortality, address biasing factors, and include predictions concerning risk and techniques to reduce risk that can be tested in the field or laboratory.

Biological Conservation↗
USGS2025

Direct effects of pesticides and other grassland management practices on the North American Monarch Butterfly (Danaus plexippus plexippus): A systematic review

This review synthesizes recent scientific literature on the effects of grassland management practices and pesticide applications on monarch butterflies ( Danaus plexippus ), focusing on studies published since the 2020 U.S. Fish and Wildlife Service Species Status Assessment (SSA). While the SSA highlighted habitat conservation efforts to enhance monarch populations, there has been limited empirical research on the direct effects of these management strategies on monarch survival and fitness. Following PRISMA guidelines, we conducted a systematic review to evaluate research published during and after the SSA (2019-2024) on the direct effects of common grassland management practices (mowing, grazing, burning, haying) and pesticides (herbicides, insecticides, fungicides) across monarch life stages. This search identified 29 studies that met our criteria. Of these, only two studies addressed the impacts of grassland management on monarchs, indicating a substantial and important information gap. The other 27 studies reviewed indicate significant risks of pesticide exposure to monarchs, particularly at immature life stages from lethal and sublethal effects. The effects of chronic insecticide exposure, particularly neonicotinoids, are especially critical to consider, as research shows insecticides can result in impairment of growth, development, and reproductive behaviors. Additionally, fungicides pose overlooked risks to monarchs due to their toxicity to non-target organisms. Notably, most studies evaluating pesticide effects were conducted in a laboratory setting and thus it is unclear how these results relate to fieldrealistic exposure, as well as exposure over multiple life history stages and potential synergistic effects of pesticides. Additional relevant information gaps remain, especially on studies of southern migratory paths critical for monarch population persistence. Data gaps at relevant scales for grassland management combined with growing evidence of pesticide persistence and subsequent threats to insects, highlight how more ecologically applicable metrics for monitoring environmental chemicals could help improve understanding of the effects of pesticides on monarchs and characterize contamination of milkweed and nectar resources.

Cooperator Science Series↗
USGS2022

What is a biocrust? A refined, contemporary definition for a broadening research community

Studies of biological soil crusts (biocrusts) have proliferated over the last few decades. The biocrust literature has broadened, with more studies assessing and describing the function of a variety of biocrust communities in a broad range of biomes and habitats and across a large spectrum of disciplines, and also by the incorporation of biocrusts into global perspectives and biogeochemical models. As the number of biocrust researchers increases, along with the scope of soil communities defined as ‘biocrust’, it is worth asking whether we all share a clear, universal, and fully articulated definition of what constitutes a biocrust. In this review, we synthesize the literature with the views of new and experienced biocrust researchers, to provide a refined and fully elaborated definition of biocrusts. In doing so, we illustrate the ecological relevance and ecosystem services provided by them. We demonstrate that biocrusts are defined by four distinct elements: physical structure, functional characteristics, habitat, and taxonomic composition. We describe outgroups, which have some, but not all, of the characteristics necessary to be fully consistent with our definition and thus would not be considered biocrusts. We also summarize the wide variety of different types of communities that fall under our definition of biocrusts, in the process of highlighting their global distribution. Finally, we suggest the universal use of the Belnap, Büdel & Lange definition, with minor modifications: Biological soil crusts (biocrusts) result from an intimate association between soil particles and differing proportions of photoautotrophic (e.g. cyanobacteria , algae , lichens , bryophytes) and heterotrophic (e.g. bacteria , fungi , archaea) organisms , which live within , or immediately on top of , the uppermost millimetres of soil. Soil particles are aggregated through the presence and activity of these often extremotolerant biota that desiccate regularly , and the resultant living crust covers the surface of the ground as a coherent layer. With this detailed definition of biocrusts, illustrating their ecological functions and widespread distribution, we hope to stimulate interest in biocrust research and inform various stakeholders (e.g. land managers, land users) on their overall importance to ecosystem and Earth system functioning.

Biological Reviews↗
USGS2018

A guide to Bayesian model checking for ecologists

Checking that models adequately represent data is an essential component of applied statistical inference. Ecologists increasingly use hierarchical Bayesian statistical models in their research. The appeal of this modeling paradigm is undeniable, as researchers can build and fit models that embody complex ecological processes while simultaneously accounting for observation error. However, ecologists tend to be less focused on checking model assumptions and assessing potential lack of fit when applying Bayesian methods than when applying more traditional modes of inference such as maximum likelihood. There are also multiple ways of assessing the fit of Bayesian models, each of which has strengths and weaknesses. For instance, Bayesian P values are relatively easy to compute, but are well known to be conservative, producing P values biased toward 0.5. Alternatively, lesser known approaches to model checking, such as prior predictive checks, cross‐validation probability integral transforms, and pivot discrepancy measures may produce more accurate characterizations of goodness‐of‐fit but are not as well known to ecologists. In addition, a suite of visual and targeted diagnostics can be used to examine violations of different model assumptions and lack of fit at different levels of the modeling hierarchy, and to check for residual temporal or spatial autocorrelation. In this review, we synthesize existing literature to guide ecologists through the many available options for Bayesian model checking. We illustrate methods and procedures with several ecological case studies including (1) analysis of simulated spatiotemporal count data, (2) N‐mixture models for estimating abundance of sea otters from an aircraft, and (3) hidden Markov modeling to describe attendance patterns of California sea lion mothers on a rookery. We find that commonly used procedures based on posterior predictive P values detect extreme model inadequacy, but often do not detect more subtle cases of lack of fit. Tests based on cross‐validation and pivot discrepancy measures (including the “sampled predictive P value”) appear to be better suited to model checking and to have better overall statistical performance. We conclude that model checking is necessary to ensure that scientific inference is well founded. As an essential component of scientific discovery, it should accompany most Bayesian analyses presented in the literature.

Ecological Monographs↗