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Chemical Constituents in Groundwater from Multiple Zones in the Eastern Snake River Plain Aquifer at the Idaho National Laboratory, Idaho, 2005-08

From 2005 to 2008, the U.S. Geological Survey's Idaho National Laboratory (INL) Project office, in cooperation with the U.S. Department of Energy, collected water-quality samples from multiple water-bearing zones in the eastern Snake River Plain aquifer. Water samples were collected from six monitoring wells completed in about 350-700 feet of the upper part of the aquifer, and the samples were analyzed for major ions, selected trace elements, nutrients, selected radiochemical constituents, and selected stable isotopes. Each well was equipped with a multilevel monitoring system containing four to seven sampling ports that were each isolated by permanent packer systems. The sampling ports were installed in aquifer zones that were highly transmissive and that represented the water chemistry of the top four to five model layers of a steady-state and transient groundwater-flow model. The model's water chemistry and particle-tracking simulations are being used to better define movement of wastewater constituents in the aquifer. The results of the water chemistry analyses indicated that, in each of four separate wells, one zone of water differed markedly from the other zones in the well. In four wells, one zone to as many as five zones contained radiochemical constituents that originated from wastewater disposal at selected laboratory facilities. The multilevel sampling systems are defining the vertical distribution of wastewater constituents in the eastern Snake River Plain aquifer and the concentrations of wastewater constituents in deeper zones in wells Middle 2051, USGS 132, and USGS 103 support the concept of groundwater flow deepening in the southwestern part of the INL.

Scientific Investigations Report

Database for the geologic map of upper Eocene to Holocene volcanic and related rocks in the Cascade Range, Washington

This geospatial database for a geologic map of the Cascades Range in Washington state is one of a series of maps that shows Cascade Range geology by fitting published and unpublished mapping into a province-wide scheme of lithostratigraphic units. Geologic maps of the Eocene to Holocene Cascade Range in California and Oregon complete the series, providing a comprehensive geologic map of the entire Cascade Range that incorporates modern field studies and that has a unified and internally consistent explanantion. The complete series will be useful for regional studies of volcanic hazards, volcanology, and tectonics. Originally a project supported by the Geothermal Research Program of the U.S. Geological Survey, the maps emphasize Quaternary volcanic rocks, because large igneous-related hydrothermal systems that have high temperatures are associated with Quaternary volcanic fields. Rocks older than a few million years are also included on the maps as they help to unravel geologic puzzles of the present-day Cascade Range. The deeply eroded older volcanoes found in the Western Cascades physiographic subprovince are analogues of today's snow-covered shield volcanoes and stratovolcanoes. The fossil hydrothermal systems of the Eocene to Pliocene vents now exposed provide clues to processes active today beneath the Pleistocene and Holocene volcanic peaks along the present-day crest of the Cascade Range. Study of these older rocks can aid in developing models of geothermal systems. These rocks also give insight into the origins of volcanic-hosted mineral deposits and even to future volcanic hazards. This digital database contains information used to produce the geologic map published as Sheet 1 in U.S. Geological Survey Miscellaneous Investigations Series Map I-2005. (Sheet 2 of Map I-2005 shows sources of geologic data used in the compilation and is available separately). Sheet 1 of Map I-2005 shows the distribution and relations of volcanic and related rock units in the Cascade Range of Washington at a scale of 1:500,000. This digital release is produced from stable materials originally compiled at 1:250,000 scale that were used to publish Sheet 1. The database therefore contains more detailed geologic information than is portrayed on Sheet 1. This is most noticeable in the database as expanded polygons of surficial units and the presence of additional strands of concealed faults. No stable compilation materials exist for Sheet 1 at 1:500,000 scale. The main component of this digital release is a spatial database prepared using geographic information systems (GIS) applications. This release also contains links to files to view or print the map sheet, main report text, and accompanying mapping reference sheet from Map I-2005. For more information on volcanoes in the Cascade Range in Washington, Oregon, or California, please refer to the U.S. Geological Survey Volcano Hazards Program website.

Washington

Geospatial PDF map of the compilation of GIS data for the mineral industries of select countries in the Indo-Pacific region

Introduction In 2024, the U.S. Geological Survey's (USGS) National Minerals Information Center (NMIC) completed the project titled "Compilation of geospatial data for the mineral industries of select countries in the Indo-Pacific." This project aimed to leverage the expertise and capabilities of the NMIC to collect, synthesize, and interpret geospatial data to inform on the extractive resources of select countries in the Indo-Pacific region (area of study) and expand the NMIC's understanding on the impact of mineral industry of these countries in the global economy. The 19 countries of interest in the Indo-Pacific study area include Bangladesh, Bhutan, Brunei, Burma, Fiji, Malaysia, Mongolia, Nauru, New Caledonia, New Zealand, Papua New Guinea, Philippines, Singapore, Solomon Islands, South Korea (Republic of Korea), Sri Lanka, Taiwan, Timor-Leste, and Vietnam. The primary objective of this effort was to create a fully attributed Geographic Information System (GIS) portraying existing mining infrastructure, resources, and production capacities across the Indo-Pacific study area as well as highlight mineral production and processing sites under development and potential areas of future extractive industry operations and development in the region. The compiled GIS geodatabase with supporting documentation including comprehensive metadata was published as a USGS data release titled "Compilation of Geospatial Data (GIS) for the Mineral Industries of Select Countries in the Indo-Pacific." This georeferenced portable document format (GeoPDF) map sheet presents a new geographic information product containing a partial representation of the GIS data. This GeoPDF map provides a visual comparison of the distribution of mineral industry GIS data, which contributes to a deeper understanding of the intersections and complexities of the extractive industries within the select countries in the Indo-Pacific region.

Open-File Report

Interferometric Sidescan Bathymetry, Sediment and Foraminiferal Analyses; a New Look at Tomales Bay, California

The United States Geological Survey (USGS) in collaboration with Point Reyes National Sea Shore (PRNS), and the Tomales Bay Watershed Council [http://www.tomalesbaywatershed.org/] has completed a detailed bathymetric survey, and sediment and foraminiferal analyses of the floor of Tomales Bay, California. The study goals are to detail the submarine morphology, the sediment distribution, sedimentary features, and distribution of foraminifera to provide a framework for future studies. The USGS collected swath bathymetric data with a SEA SWATHplus interferometric sidescan sonar system (2004, 2005) and an echo sounder system (2006). The data were processed into continuous mosaic images that show bathymetric detail of the bay floor with 0.2-m vertical and 4.0-m horizontal resolution. Acoustic backscatter data from the 2004 and 2005 surveys were processed into 2-m resolution grids. In addition, 27 sediment samples were collected from various parts of the bay for grain size analyses and a comprehensive study of the distribution of foraminifera in Tomales Bay. The foraminiferal analysis determined that the invasive foraminifera Trochammina hadai from Japan was present in Tomales Bay. The project was conducted in response to a request from the National Park Service, and the Tomales Bay Watershed Council who voiced a need to look at the environmental impacts of human input to the surrounding watersheds that ultimately flow into the bay. The mapping, sediment, and foraminiferal data establish a baseline survey for future comparisons of possible geologic and anthropogenic changes that might occur due to changes in land use or development in the surrounding watershed. These data may also aid in determining the possible pathways of pollutants entering the bay from the surrounding watersheds.

Open-File Report

Rock geochemistry in the Mahd adh Dhahab district, Kingdom of Saudi Arabia

Ten sets of geochemical samples from country rock, altered country rock, and quartz veins were collected to determine metal abundances and distributions in the Mahd adh Dhahab district. Gold, silver, copper, lead, and zinc are present throughout the district in veins and altered country rock. Although four generations of quartz veins are defined, there is complete gradation between types. The metals present are the same in all four, only the abundances vary. The concentrations of gold, silver, copper, lead, and zinc in altered country rock are zoned around known or projected mineralized-vein zones. Similarities in metal populations of all quartz veins, altered rock, and mineralized zones, plus the distribution of metals and some major elements, suggest that all formed as part of a single hydrothermal system. Gold in abundances greater than 1 ppm does not correlate with any other element and its distribution is very erratic. The variance in gold values between replicate samples collected in 0.5 m square panels is very high. Radio-element analyses (radium-equivalent uranium, thorium, and potassium) for 40 widely distributed sample localities indicate little variation in these elements throughout the district. If the hydrothermal system had an effect on the distribution of these elements, the system must have extended beyond the limits of the sampled area. Anomalous values of gold, silver, lead, and to a lesser extent copper and zinc in surface rock samples clearly delineated the northern mineralized zone in the upper agglomerate, and an east-vein area and west-vein area of the southern mineralized zone in the lower agglomerate. A third geochemically anomalous area occurs farther to the west in the lower agglomerate, suggesting that mineralization may have extended at least to this area along the lower agglomerate-lower tuff contact, and possibly even further to the west.

Open-File Report

Regional hydraulic geometry characteristics of stream channels in the Boston Mountains in Arkansas

Many stream-channel infrastructure, habitat enhancement, and restoration projects are undertaken on streams throughout Arkansas by Federal, State, and local agencies as well as by private organizations and businesses with limited data on local geomorphology and streamflow conditions. Equations that relate drainage area above stable stream reaches to the basin characteristics, bankfull streamflow, and the associated channel dimensions can be used to estimate stream conditions. These equations, along with streambed material particle information, provide information that can be used to improve stream-channel projects. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, Little Rock District, completed a study to develop these equations for streams in the Boston Mountains in Arkansas. Fourteen U.S. Geological Survey streamgages and stream reaches located in the Boston Mountains were selected for analysis. Geomorphic parameters of streams, including the mean bankfull channel dimensions (cross-sectional area, top width, mean depth, and streamflow), and the contributing drainage areas were investigated. Streambed materials were collected at eight of these sites to develop descriptive statistics of the streambed particle-size distributions and percentages of substrate type. Stream reaches at each study site were classified to Rosgen level II stream type based on the averages of stream-channel metrics collected from site cross sections and profiles. Of the 14 selected Boston Mountain stream reaches, 7 were classified as B-type streams, and 7 were classified as C-type streams. For these streams, the significant differences in measured parameters between stream types were that the B-type streams had greater depth, hydraulic radii, and bar D50 and D85 particle sizes, while C-type streams had greater watershed slopes. Streambed material particle size decreased with mean drainage basin elevation and decreased with increasing entrenchment ratios. Bar sediment size exhibited decreasing size with increasing sinuosity. Regional hydraulic geometry curves were constructed for the streams in the Boston Mountains by plotting measured bankfull geometry dimensions from stable reaches and the associated bankfull streamflow against the contributing drainage area.

Arkansas, Oklahoma

Flow monitoring along the western Tamiami Trail between County Road 92 and State Road 29 in support of the Comprehensive Everglades Restoration Plan, 2007-2010

The construction of U.S. Highway 41 (Tamiami Trail), the Southern Golden Gate Estates development, and the Barron River Canal has altered the flow of freshwater to the Ten Thousand Islands estuary of Southwest Florida. Two restoration projects, the Picayune Strand Restoration Project and the Tamiami Trail Culverts Project, both associated with the Comprehensive Everglades Restoration Plan, were initiated to address this issue. Quantifying the flow of freshwater to the estuary is essential to assessing the effectiveness of these projects. The U.S. Geological Survey conducted a study between March 2006 and September 2010 to quantify the freshwater flowing under theTamiami Trail between County Road 92 and State Road 29 in southwest Florida, excluding the Faka Union Canal (which is monitored by South Florida Water Management District). The study period was after the completion of the Tamiami Trail Culverts Project and prior to most of the construction related to the Picayune Restoration Project. The section of the Tamiami Trail that was studied contains too many structures (35 bridges and 16 culverts) to cost-effectively measure each structure on a continuous basis, so the area was divided into seven subbasins. One bridge within each of the subbasins was instrumented with an acoustic Doppler velocity meter. The index velocity method was used to compute discharge at the seven instrumented bridges. Periodic discharge measurements were made at all structures, using acoustic Doppler current profilers at bridges and acoustic Doppler velocity meters at culverts. Continuous daily mean values of discharge for the uninstrumented structures were calculated on the basis of relations between the measured discharge at the uninstrumented stations and the discharge and stage at the instrumented bridge. Estimates of daily mean discharge are available beginning in 2006 or 2007 through September 2010 for all structures. Subbasin comparison is limited to water years 2008–2010. The Faka Union Canal contributed more than half (on average 60 percent) of the flow under the Tamiami Trail between State Road 29 and County Road 92 during water years 2008–2010. During water years 2008–2010, an average 9 percent of the flow through the study area came from west of the Faka Union Canal and an average 31 percent came from east of the Faka Union Canal. Flow data provided by this study serve as baseline information about the seasonal and spatial distribution of freshwater flow under the Tamiami Trail between County Road 92 and State Road 29, and study results provide data to evaluate restoration efforts.

Florida

Estimation of annual suspended-sediment fluxes, 1931-95, and evaluation of geomorphic changes, 1950-2010, in the Arkansas River near Tulsa, Oklahoma

An understanding of fluvial sediment transport and changing channel morphology can assist planners in making responsible decisions with future riverine development or restoration projects. Sediment rating curves can serve as simple models and can provide predictive tools to estimate annual sediment fluxes. Sediment flux models can aid in the design of river projects by providing insight to past and potential future sediment fluxes. Historical U.S. Geological Survey suspended-sediment and discharge data were evaluated to estimate annual suspended-sediment fluxes for two stations on the Arkansas River located downstream from Keystone Dam in Tulsa County. Annual suspended-sediment fluxes were estimated from 1931-95 for the Arkansas River at Tulsa streamflow-gaging station (07164500) and from 1973-82 for the Arkansas River near Haskell streamflow-gaging station (07165570). The annual flow-weighted suspended-sediment concentration decreased from 1,970 milligrams per liter to 350 milligrams per liter after the completion of Keystone Dam at the Tulsa station. The streambed elevation at the Arkansas River at Tulsa station has changed less than 1 foot from 1970 to 2005, but the thalweg has shifted from a location near the right bank to a position near the left bank. There was little change in the position of most of the banks of the Arkansas River channel from 1950 to 2009. The most substantial change evident from visual inspection of aerial photographs was an apparent decrease in sediment storage in the form of mid-channel and meander bars. The Arkansas River channel between Keystone Dam and the Tulsa-Wagoner County line showed a narrowing and lengthening (increase in sinuosity) over the transition period 1950-77 followed by a steady widening and shortening of the river channel (decrease in sinuosity) during the post-dam (Keystone) periods 1977-85, 1985-2003, and 2003-10.

Scientific Investigations Report

Waste-assimilation capacity of the Arkansas River in Pueblo County, Colorado, as it relates to water-quality guidelines and stream classification

The waste-assimilation capacity of a 42-mile reach of the Arkansas River in Pueblo County, Colo., was evaluated using a one-dimensional steady-state water-quality model. The model was calibrated and verified using hydraulic and water-quality data collected in 1976 and 1979. The water-quality con-stituents modeled were 5-day carbonaceous biochemical oxygen demand, total organic nitrogen, total ammonia, total nitrite, total nitrate, and dissolved oxygen. Model calibration was acceptable for all constituents except total organic nitrogen, and verification was acceptable for all constituents except total organic nitrogen and total nitrite. A relationship between nonionized and total ammonia was defined to provide simulation capability for nonionized ammonia. The model was used to simulate the water-quality effects of 63 combinations of wastewater treatment. The water-quality effects were evaluated with respect to water-quality guidelines that may be applied based on possible stream-use classifications. Model simulations were based on a 7-day low flow with a 10-year recurrence interval that occurs between August 15 and October 15 and on a winter low-flow period that occurs as a result of upstream storage of water. The mixing zone downstream from the Pueblo Wastewater Treatment Plant outfall was evaluated to determine where the water-quality guidelines should apply for the model simulations. Complete lateral mixing of the effluent from the Pueblo Wastewater Treatment Plant occurred 2.7 river miles downstream from the outfall. Model simulations indicated a water-quality guideline of 0.06 milligram per liter nonionized ammonia nitrogen would be exceeded at the end of the mixing zone for Q7,10 conditions with secondary treatment at the Pueblo Wastewater Treatment Plant and a projected effluent discharge for the year 2000, and that a water-quality guideline of 0.5 milligram per liter total nitrite nitrogen would be exceeded for winter conditions and the same waste-water-treatment possibility. Wastewater-treatment possibilities with a pro-jected discharge for the year 2000 which would result in both water-quality guidelines being met include land application of treated effluent and advanced secondary treatment at the Pueblo Wastewater Treatment Plant with conversion of ammonia to nitrate to result in an effluent total ammonia nitrogen concentration of 5.4 to 10.6 milligrams per liter, depending on the quality of effluent from the downstream discharge from the CF&I Steel Corp. Model simulations also included an evaluation of flow augmentation necessary to meet a water-quality guideline of 0.06 milligram per liter non-ionized ammonia nitrogen. The evaluation was made for the n,7,10 period, secondary treatment at the Pueblo Wastewater Treatment Plant with a projected discharge for the year 2000, and effluent water quality at a downstream discharge which could contain twice the estimated ammonia concentration allowable for best available technology treatment for the iron and steel industry. The flow augmentation necessary to meet the water-quality guideline, based on the model simulations, is approximately 140 cubic feet per second.

Colorado

Observed and forecast flood-inundation mapping application-A pilot study of an eleven-mile reach of the White River, Indianapolis, Indiana

Near-real-time and forecast flood-inundation mapping products resulted from a pilot study for an 11-mile reach of the White River in Indianapolis. The study was done by the U.S. Geological Survey (USGS), Indiana Silver Jackets hazard mitigation taskforce members, the National Weather Service (NWS), the Polis Center, and Indiana University, in cooperation with the City of Indianapolis, the Indianapolis Museum of Art, the Indiana Department of Homeland Security, and the Indiana Department of Natural Resources, Division of Water. The pilot project showed that it is technically feasible to create a flood-inundation map library by means of a two-dimensional hydraulic model, use a map from the library to quickly complete a moderately detailed local flood-loss estimate, and automatically run the hydraulic model during a flood event to provide the maps and flood-damage information through a Web graphical user interface. A library of static digital flood-inundation maps was created by means of a calibrated two-dimensional hydraulic model. Estimated water-surface elevations were developed for a range of river stages referenced to a USGS streamgage and NWS flood forecast point colocated within the study reach. These maps were made available through the Internet in several formats, including geographic information system, Keyhole Markup Language, and Portable Document Format. A flood-loss estimate was completed for part of the study reach by using one of the flood-inundation maps from the static library. The Federal Emergency Management Agency natural disaster-loss estimation program HAZUS-MH, in conjunction with local building information, was used to complete a level 2 analysis of flood-loss estimation. A Service-Oriented Architecture-based dynamic flood-inundation application was developed and was designed to start automatically during a flood, obtain near real-time and forecast data (from the colocated USGS streamgage and NWS flood forecast point within the study reach), run the two-dimensional hydraulic model, and produce flood-inundation maps. The application used local building data and depth-damage curves to estimate flood losses based on the maps, and it served inundation maps and flood-loss estimates through a Web-based graphical user interface.

Indiana

National Assessment of Oil and Gas Project: geologic assessment of undiscovered gas hydrate resources on the North Slope, Alaska

Scientists with the U.S. Geological Survey have completed the first assessment of the undiscovered, technically recoverable gas hydrate resources beneath the North Slope of Alaska. This assessment indicates the existence of technically recoverable gas hydrate resources—that is, resources that can be discovered, developed, and produced using current technology. The approach used in this assessment followed standard geology-based USGS methodologies developed to assess conventional oil and gas resources. In order to use the USGS conventional assessment approach on gas hydrate resources, three-dimensional industry-acquired seismic data were analyzed. The analyses indicated that the gas hydrates on the North Slope occupy limited, discrete volumes of rock bounded by faults and downdip water contacts. This assessment approach also assumes that the resource can be produced by existing conventional technology, on the basis of limited field testing and numerical production models of gas hydrate-bearing reservoirs. The area assessed in northern Alaska extends from the National Petroleum Reserve in Alaska on the west through the Arctic National Wildlife Refuge on the east and from the Brooks Range northward to the State-Federal offshore boundary (located 3 miles north of the coastline). This area consists mostly of Federal, State, and Native lands covering 55,894 square miles. Using the standard geology-based assessment methodology, the USGS estimated that the total undiscovered technically recoverable natural-gas resources in gas hydrates in northern Alaska range between 25.2 and 157.8 trillion cubic feet, representing 95 percent and 5 percent probabilities of greater than these amounts, respectively, with a mean estimate of 85.4 trillion cubic feet.

Alaska

Contributions of erosion, deposition, and human activities to a change in sand storage in the bed of San Francisco Bay, California, 1980s to 2010s

This study by the U.S. Geological Survey (USGS) provides estimates of the change in sand storage in bed sediments from the 1980s to 2010s in the San Francisco Bay area, California. The study is part of a larger project called “Research to Understand Impacts of Bay Sand Mining on Sand Transport in San Francisco Bay and the Outer Coast” that has the goal of providing information for the California Coastal Conservancy to inform decision making regarding sand mining activities. Information from this study will contribute to the sand budget for the San Francisco Bay system by accounting for sand made available by erosion of bay sediment and sequestered by deposition in the bay. Sediment budgets for estuaries typically account for change in sediment storage in the bed without discriminating for sediment size. However, the physics of mud and sand erosion, deposition, and transport differ. Sediment budgets that treat mud and sand separately give a more complete understanding of the system, including how human activities related to sediment size, such as sand mining, affect the system. We used bathymetric change analysis in combination with a three-dimensional model to generate estimates of net change in sand storage within the San Francisco Bay floor. We document sediment volume change from a 1980s bathymetric surface to a 2010s bathymetric surface, in combination with information on the sand content of the bed sediment derived from sediment cores and surface samples from six different sediment studies, to estimate the net change in sand volume in the bed of San Francisco Bay. This analysis includes areas heavily affected by human activities (such as sand mining, dredging, and sediment disposal) as well as regions more representative of natural transport processes. Overall, the sediment bed of San Francisco Bay is losing sand. Across the total area surveyed in San Francisco Bay, including areas affected by natural processes, oyster shell beds, and human activities, a net loss of about 17 million cubic meters (Mm 3 ) of sand from the sediment bed occurred from the 1980s to 2010s, at a rate of about 0.8 Mm 3 per year. For the period of this study, sand loss from bed level changes in permitted sand-lease mining areas (about 11 Mm 3 ) accounts for about two-thirds of the total sand loss throughout the study area. It is important to consider potential uncertainty bounds when interpreting these findings. A key part of the report is an assessment of the uncertainties in our estimates of sand volumes. We estimate that variability in modeled sand content values of Bay floor sediments could result in an uncertainty of approximately 25 percent of the net sand volume change. Even larger uncertainty amounts may be associated with uncertainty in the systematic errors in the bathymetric surveys. Further refining estimates of uncertainty in bathymetric change is important in guiding the use of this study. The results presented here can fill a critical gap that may enable the creation of the first comprehensive sand budget of San Francisco Bay.

California

Design and methods of the California stream quality assessment (CSQA), 2017

During 2017, as part of the National Water-Quality Assessment Project, the U.S. Geological Survey conducted the California Stream Quality Assessment to investigate the quality of streams in the Central California Foothills and Coastal Mountains ecoregion, United States. The goal of the California Stream Quality Assessment study was to assess the health of wadeable streams in the region by characterizing multiple water-quality factors that are stressors to aquatic biota and by evaluating the relation between these stressors and biological indicators of stream health. Urbanization, agriculture, and modifications to streamflow are anthropogenic changes that affect water quality in the region; consequently, the study design primarily targeted sites and specific stressors associated with these activities. For the study, 85 stream sites were selected to represent the types and intensity of land use in the watershed; categories of site types were undeveloped, urban (low, medium, high), agriculture (low, high), and mixed (urban and agriculture). Most sites (about 70 percent) represent a gradient of urbanization from undeveloped to 99-percent urbanized. At most of the sites, streamgages or pressure transducers were used to monitor stream discharge and stage, as well as temperature. Water-quality samples were collected routinely at all sites and were analyzed for major ions, organic contaminants, nutrients, and suspended sediment. Sampling frequency varied on the basis of site type and location. Discrete water samples were collected weekly and generally 6 times per site, except for 11 undeveloped sites that were sampled only 4 times (during the last 4 weeks). Water sampling began at sites in the southern part of the study on March 13, 2017, and at sites in the northern part of the study on April 3, 2017. Passive samplers were deployed at most sites for measurement of polar organic contaminants (pesticides and pharmaceuticals). In May 2017, coincident with completion of water-quality sampling, an ecological survey was conducted at each site to assess benthic algal and macroinvertebrate communities and instream habitat. During the ecological surveys, a single composite streambed-sediment sample was collected for chemical analysis and toxicity testing. In addition, a few focused studies were done at subsets of sites, namely, measuring pesticides using small-volume automated samplers, measuring pesticides in biofilms, and sampling suspended sediments using passive samplers. This report describes the various study components and methods of the California Stream Quality Assessment, including measurements of water quality, sediment chemistry, habitat assessments, and ecological surveys, as well as procedures for sample analysis, quality assurance and quality control, and data management.

California

Results of a Two-Dimensional Hydrodynamic and Sediment-Transport Model to Predict the Effects of the Phased Construction and Operation of the Olmsted Locks and Dam on the Ohio River near Olmsted, Illinois

The Olmsted two-dimensional hydrodynamic and sediment-transport model was developed in cooperation with the U.S. Army Corps of Engineers, Louisville District. The model was used to estimate the effects that the phased-construction sequence and operation of the Olmsted Locks and Dam had on sediment-transport patterns in the 11.9-mile study reach (Ohio River miles 962.6 to 974.5), particularly over an area of endangered orange-footed pearly mussel (Plethobasus cooperianus) beds beginning approximately 2 miles downstream of the dam construction. A Resource Management Associates?2 (RMA-2) two-dimensional hydrodynamic model for the reach was calibrated to a middle-flow hydraulic survey (350,000 cubic feet per second) and verified with data collected during low- and high-flow hydraulic surveys (72,500 and 770,000 cubic feet per second, respectively). The calibration and validation process included matching water-surface elevations at the construction site and velocity profiles at 15 cross sections throughout the study reach. The sediment-transport aspect of the project was simulated with the Waterways Experiment Station's Sed2D model for a 6-year planned-construction period (construction-phase modeling) and a subsequent 3-year operational period (operational-phase modeling). The sediment-transport results from the construction and operational models both were compared to results of concurrent baseline simulations to determine the changes in erosional and depositional patterns induced by the dam construction and operation throughout the study reach and more importantly over the area of the endangered mussel beds. Simulation of the phased-in-the-wet Olmsted Locks and Dam construction and subsequent operation period resulted in a maximum additional deposition of approximately 2 feet over a localized region of the mussel beds when compared to the bed change simulated with baseline conditions (river conditions that included only the completed locks section). Most areas on the mussel beds experienced less than 0.5 feet of cumulative bed change between the baseline and construction phases during the nine annual hydrographs. The bed change over the 9 year Olmsted Locks and Dam simulation reveals a continuous downstream progression and deepening of the main channel and deposition along the right bank with limited lateral migration toward the more densely populated mussel-bed areas. The sensitivity of the mussels to sediment deposition is difficult to quantify; therefore, the effect of simulated deposition on the welfare of the mussels is uncertain. The model also will provide the U.S. Army Corps of Engineers a tool to predict the locations of high deposition in navigable sections, which can save engineers time and resources when monitoring the need for dredging operations.

Water-Resources Investigations Report

Management of ground water and evolving hydrogeologic studies in New Jersey : a heavily urbanized and industrialized state in the northeastern United States

New Jersey is the most densely populated and one of the most industrialized states in the United States. An abundance of freshwater and proximity to major northeastern metropolitan centers has facilitated this development. Pumpage of freshwater from all aquifers in the State in 1980 was 730 million gallons per day (2.76 million cubic meters per day). Management and efficient development of the ground-water resources of the State are the responsibility of the New Jersey Department of Environmental Protection. Laws have been enacted and updated by the State legislature to manage water allocation and to control the disposal of hazardous wastes. Present resource management is guided by the New Jersey Water-Supply Master Plan of 1981. Funding for management activities is partially derived from the sale of state-approved bonds. Effective planning and regional management require accurate and up-to-date hydrologic information and analyses. The U.S. Geological Survey, in cooperation with the New Jersey Geological Survey, is conducting three intensive ground-water studies involving the collection and interpretation of hydrologic data to meet the urgent water-management needs of New Jersey. These studies are part of a long-term cooperative program and are funded through the Water-Supply Bond Act of 1981. They began in 1983 and are scheduled to be completed in 1988. The project areas are situated in the New Jersey part of the Atlantic Coastal Plain in and near Atlantic City, Camden, and South River. They range in size from 400 to 1,200 mil (1,040 to 3,120 km2). The studies are designed to define the geology, hydrology, and geochemistry of the local ground-water systems. The results of these studies will enable the State to address more effectively major problems in these areas such as declining water levels, overpumping, saltwater intrusion, and ground-water contamination resulting from the improper disposal of hazardous wastes. Specific objectives of these studies by the U.S. Geological Survey are to (1) develop an accurate and up-to-date hydrogeologic data base, (2) design and implement a data-collection program and establish a computerized information management system, (3) refine the conceptualization of the ground-water flow system, and (4) define the geochemistry of the aquifer system by conducting a water-quality appraisal. The objectives are accomplished by standard hydrogeologic methods. Information concerning hydrogeologic framework, ground-water levels, water use, hydraulic characteristics, and water quality in the study areas is compiled from all available sources. Additional data needed are collected through well inventories, surface geophysical surveys, water-quality samplings, water-level measurements, and a well-drilling program. Interpretation of the flow system is based on the use of standard analytical techniques and digital flow modeling. Calibrated flow models will provide ground-water managers with a mechanism to develop and test regional water-supply strategies. Definition of the geochemistry of the aquifer system is accomplished through a variety of methods which depend on the problems and available data in the particular study area. The approach includes statistical analysis of water-quality data, reaction-path modeling, and determination of the movement of chemical constituents using analytical and numerical modeling techniques. A combined staff of 25 to 30 professionals and technicians from the New Jersey District office of the U.S. Geological Survey is committed to the three studies. The staff has specialists in geohydrology, numerical modeling, geochemistry, geophysics, and computer science. The findings of these studies will be published in data reports, interpretive reports, instructional manuals and journal articles.

New Jersey

Effects of equipment performance on data quality from the National Atmospheric Deposition Program/National Trends Network and the Mercury Deposition Network

The U.S. Geological Survey Branch of Quality Systems operates the Precipitation Chemistry Quality Assurance project (PCQA) to provide independent, external quality-assurance for the National Atmospheric Deposition Program (NADP). NADP is composed of five monitoring networks that measure the chemical composition of precipitation and ambient air. PCQA and the NADP Program Office completed five short-term studies to investigate the effects of equipment performance with respect to the National Trends Network (NTN) and Mercury Deposition Network (MDN) data quality: sample evaporation from NTN collectors; sample volume and mercury loss from MDN collectors; mercury adsorption to MDN collector glassware, grid-type precipitation sensors for precipitation collectors, and the effects of an NTN collector wind shield on sample catch efficiency. Sample-volume evaporation from an NTN Aerochem Metrics (ACM) collector ranged between 1.1–33 percent with a median of 4.7 percent. The results suggest that weekly NTN sample evaporation is small relative to sample volume. MDN sample evaporation occurs predominantly in western and southern regions of the United States (U.S.) and more frequently with modified ACM collectors than with N-CON Systems Inc. collectors due to differences in airflow through the collectors. Variations in mercury concentrations, measured to be as high as 47.5 percent per week with a median of 5 percent, are associated with MDN sample-volume loss. Small amounts of mercury are also lost from MDN samples by adsorption to collector glassware irrespective of collector type. MDN 11-grid sensors were found to open collectors sooner, keep them open longer, and cause fewer lid cycles than NTN 7-grid sensors. Wind shielding an NTN ACM collector resulted in collection of larger quantities of precipitation while also preserving sample integrity.

Open-File Report

Settlement of the USS Arizona, Pearl Harbor, Hawaii

The U.S. Geological Survey, in collaboration with the National Park Service Submerged Resources Center, undertook investigations at the USS Arizona Memorial at Pearl Harbor, Hawaii, in 2002, 2003, and 2005 to characterize geological factors affecting the deterioration and movement of the hull of the USS Arizona. Since sinking on the morning of December 7, 1941, the hull of the USS Arizona has been slowly but steadily disappearing below the surface of Pearl Harbor. Continuous sediment coring at three of four locations around the hull of the Arizona was only partially successful, but it was sufficient to identify a varied sedimentary substrate beneath the hull. A boring near the stern reveals a thick, continuous sequence of soft, gray clay to the bottom of the boring. In contrast, borings near the bow and starboard side, below about 5 meters subbottom depth, indicate the presence of very stiff, brown clay and coral debris and an absence of soft clay. Multisensor core logger scanning of the recovered cores distinguishes the lower density of the soft, gray clay at the stern from the higher density of the stiff, brown clays and coral debris at the bow and starboard side. Uniaxial consolidation testing of the soft gray clay indicates a normally consolidated sequence, whereas the stiff, brown clay and coral debris are overconsolidated. Profiles of shear wave velocity vs. depth obtained through spectral analysis of interface wave testing around the perimeter of the hull in 2005 identified areas of higher velocity, stiffer sediment at the bow and starboard side, which correspond to the dense, stiff clay recovered near the bow and starboard borings. Low shear-wave velocities at the port midship and quarter of the hull correlate with the lower density, softer sediment recovered from the boring at the stern. Cross sections of the subbottom of the Memorial combine results from the sediment borings and geophysical surveys and depict a wedge of soft clay unconformably overlying the stiff clays and coral debris beneath the aft half of the USS Arizona and thickening toward the stern. The 2008 position of the hull has been documented using both tide-based and differential Global Positioning System (GPS) measuring systems. Analysis of historical and recent photographs was done to create a record of settlement from the time of sinking in 1941 to the present. By examining shadows in suitable photos, the sun azimuth, local time of day, and tide levels were determined to derive tide-adjusted and sea-level-rise-corrected elevations for structures on the hull and from these elevations to obtain settlement and tilt trends. The settlement trends, most complete for barbette 3, have two components. An early, nonlinear component ends on December 9, 1941, and represents the initial penetration and displacement of the bottom sediment by the hull. A linear, long-term trend of normal consolidation continues to the present day. Long-term settlement rates are greatest at the stern and decrease linearly to the midship, showing that the aft half of the hull is moving as an intact, rigid body. The recent rate of settlement at the stern is about 3.5 mm/year; rates at the starboard midship and forward part of the hull are less than one-third of the stern rate. The aft half of the USS Arizona hull presently tilts about 2 degrees to port, an increase of at least 1.5 degrees since the initial sinking of the ship. The results of this study identify differential settlement of the Arizona hull, due to the wedge of soft clay underlying the aft half of the hull, as the cause of the movement of the hull beneath the surface of Pearl Harbor. Calculation of sediment consolidation using lab-determined properties of the soft clay demonstrates that the observed settlements can be reproduced by projecting appropriate clay thicknesses beneath the hull. Several of the high-quality photographs analyzed for the historical settlement analysis highlight some of the limitations of this retrospective technique for determining tide-based elevations. In these cases, calculated structure elevations do not conform to the settlement trend, indicating that there can be complicating factors affecting the interpretation of the photos. Conflicting dates for events during the salvage operations were also encountered.

Hawai'i

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods