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USGS2016

Spatial and temporal variability of contaminants within estuarine sediments and native Olympia oysters: A contrast between a developed and an undeveloped estuary

Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from industrial, municipal, and urban lands, accidental spills, and atmospheric deposition. The diversity of potential sources contributes to the likelihood of contaminated marine waters and sediments and increases the probability of uptake by marine organisms. Despite widespread recognition of direct and indirect pathways for contaminant deposition and organismal exposure in coastal systems, spatial and temporal variability in contaminant composition, deposition, and uptake patterns are still poorly known. We investigated these patterns for a suite of persistent legacy contaminants including polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) and chemicals of emerging concern including pharmaceuticals within two Oregon coastal estuaries (Coos and Netarts Bays). In the more urbanized Coos Bay, native Olympia oyster ( Ostrea lurida ) tissue had approximately twice the number of PCB congeners at over seven times the total concentration, yet fewer PBDEs at one-tenth the concentration as compared to the more rural Netarts Bay. Different pharmaceutical suites were detected during each sampling season. Variability in contaminant types and concentrations across seasons and between species and media (organisms versus sediment) indicates the limitation of using indicator species and/or sampling annually to determine contaminant loads at a site or for specific species. The results indicate the prevalence of legacy contaminants and CECs in relatively undeveloped coastal environments highlighting the need to improve policy and management actions to reduce contaminant releases into estuarine and marine waters and to deal with legacy compounds that remain long after prohibition of use. Our results point to the need for better understanding of the ecological and human health risks of exposure to the diverse cocktail of pollutants and harmful compounds that will continue to leach from estuarine sediments over time.

Oregon↗

USGS2017

Simultaneous estimation of diet composition and calibration coefficients with fatty acid signature data

Knowledge of animal diets provides essential insights into their life history and ecology, although diet estimation is challenging and remains an active area of research. Quantitative fatty acid signature analysis (QFASA) has become a popular method of estimating diet composition, especially for marine species. A primary assumption of QFASA is that constants called calibration coefficients, which account for the differential metabolism of individual fatty acids, are known. In practice, however, calibration coefficients are not known, but rather have been estimated in feeding trials with captive animals of a limited number of model species. The impossibility of verifying the accuracy of feeding trial derived calibration coefficients to estimate the diets of wild animals is a foundational problem with QFASA that has generated considerable criticism. We present a new model that allows simultaneous estimation of diet composition and calibration coefficients based only on fatty acid signature samples from wild predators and potential prey. Our model performed almost flawlessly in four tests with constructed examples, estimating both diet proportions and calibration coefficients with essentially no error. We also applied the model to data from Chukchi Sea polar bears, obtaining diet estimates that were more diverse than estimates conditioned on feeding trial calibration coefficients. Our model avoids bias in diet estimates caused by conditioning on inaccurate calibration coefficients, invalidates the primary criticism of QFASA, eliminates the need to conduct feeding trials solely for diet estimation, and consequently expands the utility of fatty acid data to investigate aspects of ecology linked to animal diets.

Ecology and Evolution↗

USGS2014

Spatial variation and low diversity in the major histocompatibility complex in walrus ( Odobenus rosmarus )

Increased global temperature and associated changes to Arctic habitats will likely result in the northward advance of species, including an influx of pathogens novel to the Arctic. How species respond to these immunological challenges will depend in part on the adaptive potential of their immune response system. We compared levels of genetic diversity at a gene associated with adaptive immune response [Class II major histocompatibility complex (MHC), DQB exon 2] between populations of walrus ( Odobenus rosmarus ), a sea ice-dependent Arctic species. Walrus was represented by only five MHC DQB alleles, with frequency differences observed between Pacific and Atlantic populations. MHC DQB alleles appear to be under balancing selection, and most (80 %; n = 4/5) of the alleles were observed in walruses from both oceans, suggesting broad scale differences in the frequency of exposure and diversity of pathogens may be influencing levels of heterozygosity at DQB in walruses. Limited genetic diversity at MHC, however, suggests that walrus may have a reduced capacity to respond to novel immunological challenges associated with shifts in ecological communities and environmental stressors predicted for changing climates. This is particularly pertinent for walrus, since reductions in summer sea ice may facilitate both northward expansion of marine species and associated pathogens from more temperate regions, and exchange of marine mammals and associated pathogens through the recently opened Northwest Passage between the Atlantic and Pacific Oceans in the Canadian high Arctic.

Polar Biology↗

USGS2025

Sea otter-mediated linkages among oceanic, nearshore, and terrestrial ecosystems

Seemingly distinct ecological communities are often linked by both direct and indirect interactions that can be difficult to discern. A widely recognized interecosystem linkage is the transfer of marine-derived nutrients to terrestrial systems via anadromous fish. In this chapter, we explore other linkages that move marine-derived nutrients between ocean and terrestrial ecosystems, focusing on the role of nearshore marine ecosystems . Through oceanic nutrients and biomass that originate from phytoplankton, and nearshore nutrients and biomass that derive mainly from macroalgae, there are multiple pathways to subsidize terrestrial ecosystems. We discuss various pathways identified through multiple independent studies and explore how those subsidies may be related to sea otter presence. Recovery of sea otters and subsequent changes to nearshore communities, for example, changes in kelp, invertebrate and vertebrate abundance, and diversity, may in turn influence coastal terrestrial ecosystems and species including bears, wolves, foxes, river otters, shorebirds, and other consumers. As offshore oceanic productivity declines globally, we ask how the return of the sea otter reinvigorates diminished and lost linkages between marine and terrestrial environments through direct predator–prey linkages, and indirectly through the enhancement of the nearshore marine environment.

Book chapter↗

USGS2004

Stable foraging areas and variable chick diet in Cassin's auklets (Ptychoramphus aleuticus) off southern California

Planktivorous seabirds readily respond to changes in marine ecosystems and have the ability to integrate information regarding variability in abundance, availability, and community composition of key prey resources. We studied the foraging and breeding ecology of the Cassin's auklet, Ptychoramphus aleuticus (Pallas, 1811), off southern California during three breeding seasons (1999-2001), when large intra- and inter-annual variability occurred in local oceanographic conditions during a prolonged La Nina event. Radio-marked parents used consistent core foraging areas within 30 km of their colony, aggregated in shelf waters (< 200 m depth), and occasionally foraged in deeper waters. Parents delivered primarily euphausiids, pelagic larval-juvenile fishes, and minor amounts of cephalopods and other crustaceans. Whereas the euphausiid Thysanoessa spinifera Holmes, 1900 was most important during 1999 and 2001, Euphausia pacifica Hansen, 1911 replaced adult T. spinifera in 2000 after an anomalous eastward inflection of the California Current occurred near the auklets' foraging area. Differences in chick diets, however, did not significantly influence fledging success and growth among first chicks, but the proportion of pairs successfully fledging an alpha chick and initiating a second clutch was exceptional in 1999 (63%) and 2000 (75%), and less in 2001 (7%). We suggest that dietary composition was influenced by modified prey availability driven in part by fluctuations in regional upwelling and circulation. ?? 2004 NRC Canada.

Canadian Journal of Zoology↗

USGS2014

Resource manager information needs regarding hydrologic regime shifts for the North Pacific Landscape Conservation

Landscape Conservation Cooperatives (LCCs) are a network of 22 public-private partnerships, defined by ecoregion, that share and provide science to ensure the sustainability of land, water, wildlife, and cultural resources in North America. LCCs were established by the U.S. Department of the Interior (DOI) in recognition of the fact that response to climate change must be coordinated on a landscape-level basis because important resources, ecosystem processes, and resource management challenges extend beyond most of the boundaries considered in current natural resource management. The North Pacific LCC (NPLCC) covers the range of the Pacific coastal temperate rainforest, including an area of 528,360 km 2 spanning 22 degrees of latitude from the Kenai Peninsula, Alaska, to Bodega Bay, California. The coverage area includes parts of four States, two Canadian provinces, and more than 100 Tribes and First Nation language groups. It extends from alpine areas at the crest of coastal mountains across subalpine, montane, and lowland forests to the nearshore marine environment. This wide range of latitudes and elevation zones; terrestrial, freshwater, and marine habitats; and complex jurisdictional boundaries hosts a diversity of natural resources and their corresponding management issues are equally diverse. As evidenced by the Science and Traditional Ecological Knowledge (S-TEK) Strategy guiding principles, identifying and responding to the needs of resource managers is key to the success of the NPLCC. To help achieve this goal of the NPLCC, the U.S. Geological Survey (USGS) has organized several workshops with resource managers and resource scientists to identify management information needs relevant to the priority topics identified in the S-TEK Strategy. Here, we detail the results from a first workshop to address the effects of changes in hydrologic regime on rivers, streams, and riparian corridors. The workshop focused on a subset of the full NPLCC geography and was structured to answer the following questions: What are the valued resources and services that may be affected by hydrologic regime changes in the region? What are the management goals for those resources? How is climate change anticipated to affect valued resources and goals? What adaptation strategies may managers use in response to anticipated changes in resources due to climate-related hydrologic change? What information is needed to inform and use management responses?

Open-File Report↗

USGS2004

Two-dimensional hydrodynamic simulation of surface-water flow and transport to Florida Bay through the Southern Inland and Coastal Systems (SICS)

Successful restoration of the southern Florida ecosystem requires extensive knowledge of the physical characteristics and hydrologic processes controlling water flow and transport of constituents through extremely low-gradient freshwater marshes, shallow mangrove-fringed coastal creeks and tidal embayments, and near-shore marine waters. A sound, physically based numerical model can provide simulations of the differing hydrologic conditions that might result from various ecosystem restoration scenarios. Because hydrology and ecology are closely linked in southern Florida, hydrologic model results also can be used by ecologists to evaluate the degree of ecosystem restoration that could be achieved for various hydrologic conditions. A robust proven model, SWIFT2D, (Surface-Water Integrated Flow and Transport in Two Dimensions), was modified to simulate Southern Inland and Coastal Systems (SICS) hydrodynamics and transport conditions. Modifications include improvements to evapotranspiration and rainfall calculation and to the algorithms that describe flow through coastal creeks. Techniques used in this model should be applicable to other similar low-gradient marsh settings in southern Florida and elsewhere. Numerous investigations were conducted within the SICS area of southeastern Everglades National Park and northeastern Florida Bay to provide data and parameter values for model development and testing. The U.S. Geological Survey and the National Park Service supported investigations for quantification of evapotranspiration, vegetative resistance to flow, wind-induced flow, land elevations, vegetation classifications, salinity conditions, exchange of ground and surface waters, and flow and transport in coastal creeks and embayments. The good agreement that was achieved between measured and simulated water levels, flows, and salinities through minimal adjustment of empirical coefficients indicates that hydrologic processes within the SICS area are represented properly in the SWIFT2D model, and that the spatial and temporal resolution of these processes in the model is adequate. Sensitivity analyses were conducted to determine the effect of changes in boundary conditions and parameter values on simulation results, which aided in identifying areas of greatest uncertainty in the model. The parameter having the most uncertainty (most in need of further field study) was the flow coefficient for coastal creeks. Smaller uncertainties existed for wetlands frictional resistance and wind. Evapotranspiration and boundary inflows indicated the least uncertainty as determined by varying parameters used in their formulation and definition. Model results indicated that wind was important in reversing coastal creek flows. At Trout Creek (the major tributary connecting Taylor Slough wetlands with Florida Bay), flow in the landward direction was not simulated properly unless wind forcing was included in the simulation. Simulations also provided insight into the major influence that wind has on salinity mixing along the coast, the varying distribution of wetland flows at differing water levels, and the importance of topography in controlling flows to the coast. Slight topographic variations were shown to highly influence the routing of water. A multiple regression analysis was performed to relate inflows at the northern boundary of Taylor Slough bridge to a major pump station (S-332) north of the SICS model area. This analysis allows Taylor Slough bridge boundary conditions to be defined for the model from operating scenarios at S-332, which should facilitate use of the SICS model as an operational tool.

Florida↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2013

Sub-tidal benthic habitats of central San Francisco Bay and offshore Golden Gate area: A review

Deep-water potential estuarine and marine benthic habitat types were defined from a variety of new and interpreted data sets in central San Francisco Bay and offshore Golden Gate area including multibeam echosounder (MBES), side-scan sonar and bottom grab samples. Potential estuarine benthic habitats identiﬁed for the ﬁrst time range from hard bedrock outcrops on island and mainland ﬂanks and some Bay ﬂoor regions, to soft, very dynamic bedforms consisting of sediment waves and ripples. Soft sediment ranges from mud and sand to bimodal (two or more grain sizes) sediment of gravel, pebbles, and cobbles. In addition, considerable anthropogenic features (i.e., pipelines, bridge abutments, dredged channels, dump sites) were distinguished. Of the 52 potential benthic habitat types mapped (compressed to 14 types for this paper), 24 were of un-consolidated sediment with five of these comprised of dynamic bedforms or sediment waves and dunes, five of mixed (soft over hard) substrate type, six of hard substrate or rock outcrop, 13 of anthropogenically disturbed areas and four hard anthropogenic features. Rock outcrops and rubble are considered the primary habitat type for rockfish ( Sebastes spp. ), lingcod ( Ophiodon elongatus ) and in shallow water for herring ( Clupea pallasii ) spawning. Dynamic bedforms such as sand waves are considered potential foraging habitat for juvenile lingcod, may be sub-tidal habitat for the Paciﬁc sand lance ( Ammodytes hexapterus ) forage ﬁsh, and possibly resting habitat for migratory ﬁshes such as sturgeon ( Acipenser medirostris ). The potential marine benthic habitats identiﬁed in San Francisco Bay are not unlike those found in other estuaries around the world and this study should contribute signiﬁcant information that will be of interest to scientists, managers and ﬁshers investigating and utilizing bay and estuarine resources. As described in the many papers of this special issue, the understanding of the interrelationship of geology and ecology is critical to the identiﬁcation of essential habitats and the sustainability of a healthy ecosystem.

California↗

USGS2026

Pliocene (Piacenzian) planktic foraminiferal biogeography: Insights into how planktic biogeography is linked to climate and socioeconomic impacts on marine ecosystems

The Piacenzian Age (3.60–2.58 Ma) of the Pliocene Epoch was characterized by globally warmer climates, higher sea levels, and atmospheric CO 2 similar to present. Utilizing a robust dataset of 2,101 samples and over 637,000 foraminifer specimens from 77 deep-sea core sites worldwide, we document planktic foraminifer biogeography and biodiversity during the mid-Piacenzian Warm Period (mPWP). Cluster analysis and multidimensional scaling reveal five major bioregions: tropical, warm subtropical, transitional, polar, and a distinct North Atlantic polar bioregion. Each bioregion was dominated by characteristic species with well-established temperature preferences. Analyses demonstrate higher species richness and evenness in low and mid-latitudes, with increased diversity associated with periods of climatic warming and poleward expansion of warm water assemblages. The long-term stability of biogeographic patterns underscores ecological conservatism but also highlights potential vulnerability to rapid anthropogenic climate change. Our findings emphasize the critical role of planktic foraminifers in reconstructing past ocean conditions and offer valuable insights into links between planktic biogeography, climate, and socioeconomic impacts on marine ecosystems. This work advances our understanding of marine ecosystem responses to climate extremes and provides a foundation for future regional and temporal analyses of planktic foraminifer biogeography under global change scenarios.

Frontiers in Earth Science↗

USGS2009

An evaluation of density-dependent and density-independent influences on population growth rates in Weddell seals

Much of the existing literature that evaluates the roles of density-dependent and density-independent factors on population dynamics has been called into question in recent years because measurement errors were not properly dealt with in analyses. Using state-space models to account for measurement errors, we evaluated a set of competing models for a 22-year time series of mark-resight estimates of abundance for a breeding population of female Weddell seals (Leptonychotes weddellii) studied in Erebus Bay, Antarctica. We tested for evidence of direct density dependence in growth rates and evaluated whether equilibrium population size was related to seasonal sea-ice extent and the Southern Oscillation Index (SOI). We found strong evidence of negative density dependence in annual growth rates for a population whose estimated size ranged from 438 to 623 females during the study. Based on Bayes factors, a density-dependence-only model was favored over models that also included en! vironmental covariates. According to the favored model, the population had a stationary distribution with a mean of 497 females (SD = 60.5), an expected growth rate of 1.10 (95% credible interval 1.08-1.15) when population size was 441 females, and a rate of 0.90 (95% credible interval 0.87-0.93) for a population of 553 females. A model including effects of SOI did receive some support and indicated a positive relationship between SOI and population size. However, effects of SOI were not large, and including the effect did not greatly reduce our estimate of process variation. We speculate that direct density dependence occurred because rates of adult survival, breeding, and temporary emigration were affected by limitations on per capita food resources and space for parturition and pup-rearing. To improve understanding of the relative roles of various demographic components and their associated vital rates to population growth rate, mark-recapture methods can be applied that incorporate both environmental covariates and the seal abundance estimates that were developed here. An improved understanding of why vital rates change with changing population abundance will only come as we develop a better understanding of the processes affecting marine food resources in the Southern Ocean.

Ecology↗

USGS2009

Stratigraphy and conodont biostratigraphy of the uppermost Carboniferous and Lower Permian from the North American Midcontinent

Part A The uppermost Wabaunsee, Admire, Council Grove, and lower Chase Groups of Kansas, Oklahoma, and Nebraska are placed into three third-order depositional sequences: a Gzhelian late-highstand sequence set, a Council Grove transgressive and highstand sequence set, and a Chase transgressive sequence set. Sequences are defined by bounding maximum-exposure surfaces and are placed within the zone of exposure surfaces (typically, stacked paleosols). Conodonts are abundant in open-marine deposits and most marine units have a differing and characteristic faunal make-up. Eleven species are described as new: Streptognathodus binodosus , S. denticulatus , S. elongianus , S. florensis , S. lineatus , S. nevaensis , S. postconstrictus , S. postelongatus , S. robustus , S. translinearis , and S. trimilus . Part B Maximum-marine flooding levels and marine-condensed sections from uppermost Carboniferous and Lower Permian fourth-order (0.1-1 m.y.) depositional sequences of the North American midcontinent reveal a rich stratigraphic succession of species of Streptognathodus and Sweetognathus conodonts that permits high-precision correlation of the Carboniferous-Permian boundary as well as the Asselian-Sakmarian and Sakmarian-Artinskian boundaries. Eleven new species of Streptognathodus are described: Streptognathodus binodosus , S. denticulatus , S. elongianus , S. florensis , S. lineatus , S. nevaensis , S. postconstrictus , S. postelongatus , S. robustus , S. translinearis , and S. trimilus . Seventeen species are redescribed and clarified and include Streptognathodus alius , S. barskovi , S. bellus , S. brownvillensis , S. conjunctus , S. constrictus , S. elongatus , S. farmeri , S. flexuosus , S. fuchengensis , S. fusus , S. invaginatus , S. isolatus , S. longissimus , S. minacutus , S. nodulinearis , and S. wabaunsensis . The correlated level of the Carboniferous-Permian boundary is recognized in the lower part of the Red Eagle Depositional Sequence based on the introduction of Streptognathodus isolatus Chernykh, Ritter, and Wardlaw; Streptognathodus minacutus Barskov and Reimers; Streptognathodus invaginatus Reshetkova and Chernykh; Streptognathodus fuchengensis Zhao; and Streptognathodus nodulinearis Reshetkova and Chernykh. The correlated Carboniferous-Permian boundary occurs in the depositional sequence that represents the maximum-marine highstand of the Council Grove Composite Third Order Sequence. This level represents a significant marine-flooding event that should be correlatable in numerous shelfal sections throughout the world. Although the Asselian-Sakmarian boundary has not been rigorously defined, Sweetognathus merrilli has been informally utilized as a Sakmarian indicator. Due to the ecologically controlled distribution of species of Sweetognathus , we prefer to use a species of Streptognathodus as a defining species. We propose that Streptognathodus barskovi (Kozur) Reshetkova be considered as a potentially defining or ancillary defining species for the Sakmarian Stage. In the North American midcontinent, Streptognathodus barskovi appears in the same depositional sequence with Sweetognathus merrilli in the Eiss (Lower Bader) Depositional Sequence. Historically, Sweetognathus whitei has been used to mark the Sakmarian-Artinskian boundary. In our succession Sweetognathus whitei and Streptognathodus florensis appear in the basal part of the Barneston Depositional Sequence. We suggest that Streptognathodus florensis be further investigated as a possible defining or ancillary defining taxon for the base of the Artinskian Stage. This depositional sequence also forms the maximum-marine highstand of the Chase Third-Order Composite Depositional Sequence suggesting that this level is a significant marine-flooding event that should be widely traceable in numerous shelfal sections.

Kansas;Nebraska;Oklahoma↗

USGS1972

Factors of ecologic succession in oligotrophic fish communities of the Laurentian Great Lakes

Oligotrophic fish communities of the Great Lakes have undergone successive disruptions since the mid-1800s. Major contributing factors have been intensive selective fisheries, extreme modification of the drainage, invasion of marine species, and progressive physical–chemical changes of the lake environments. Lake Ontario was the first to be affected as its basin was settled and industrialized earliest, and it was the first to be connected by canals to the mid-Atlantic where the alewife ( Alosa pseudoharengus ) and sea lamprey ( Petromyzon marinus ) which ultimately became established in the Great Lakes were abundant. Oligotrophic fish communities were successively disrupted in Lakes Erie, Huron, Michigan, and Superior as the affects of population growth, industrialization, and marine invaders spread upward in the Laurentian drainage.The degree and sequence of response of families offish and species within families differed for each factor, but the sequence of change among families and species has been the same in response to each factor as it affected various lakes at different times. The ultimate result of the disruption of fish communities has been a reduction of productivity of oligotrophic species that ranges from extreme in Lake Ontario to moderate in Lake Superior, and which has reached a state of instability and rapid change in the upper three Great Lakes by the rnid-1900s similar to the situation in Lake Ontario in the mid-1800s. Since oligotrophic species (primarily salmonines, coregonines, and deepwater cottids) are the only kinds of fish that fully occupied the entire volume of the deepwater Great Lakes (Ontario, Huron, Michigan, and Superior), the fish biomass of these lakes has been reduced as various species declined or disappeared. In Lake Erie, which is shallow, and in the shallow bays of the deep lakes, oligotrophic species were replaced by mesotrophic species, primarily percids, which have successively increased and declined. All oligotrophic species are greatly reduced or extinct in lakes Ontario and Erie, and are in various stages of decline in lakes Huron, Michigan, and Superior, from greatest to least, respectively. The percids appear to be near the end of their sequence of succession in lakes Erie, Ontario, and Huron (primarily Saginaw Bay) where only the yellow perch ( Perca flavescens ) remains abundant. The yellow perch appears to be on the brink of decline in Lake Erie, which has been more severely influenced by water quality change than the other lakes.

Journal of the Fisheries Research Board of Canada↗

USGS2020

Movement ecology and habitat use differences in Black Scoters wintering along the Atlantic coast

For migratory species such as Black Scoters ( Melanitta americana ) whose range encompasses a variety of habitats, it is especially important to obtain habitat use information across the species’ range to better understand anthropogenic threats, e.g., marine development and climate change. The objective of our study was to investigate the winter movement patterns and habitat use of Black Scoters in the Atlantic Ocean by quantifying the following key movement indices: number of wintering sites, arrival and departure dates to and from the wintering grounds, days at a wintering site, area of a wintering site, distance between wintering sites, and differences in habitat features of wintering sites. We also tested if winter movement patterns varied by sex or along a latitudinal gradient. To quantify winter movement patterns of Black Scoters, we used satellite telemetry data from 2009 to 2012 (n = 29 tagged females and 15 males for a total of 66 winter seasons, 38 female winter seasons, 28 male winter seasons). Our results indicated that the average wintering site area and distance between wintering sites varied with latitude. Wintering sites located at southern latitudes were larger and further apart than wintering sites located at more northern latitudes. Additionally, wintering sites varied in bathymetry, distance to shore, and the slope of the ocean floor at different latitudes; northern wintering sites were in deeper waters, closer to shore, and on steeper slopes than southern wintering sites. Our results suggest that habitat use may differ by latitude, indicating that habitats used in northern locations may not be representative of habitats used in more southern wintering areas. Understanding variation of habitat use along a latitudinal gradient will enable managers to focus sampling effort for Black Scoter abundance and distribution along the Atlantic coast and provide insight on the wintering ecology and movement of Black Scoters.

Connecticut, Delaware, Florida, Georgia, Maryland,↗

USGS2015

Natural disturbance shapes benthic intertidal macroinvertebrate communities of high latitude river deltas

Unlike lower latitude coastlines, the estuarine nearshore zones of the Alaskan Beaufort Sea are icebound and frozen up to 9 months annually. This annual freezing event represents a dramatic physical disturbance to fauna living within intertidal sediments. The main objectives of this study were to describe the benthic communities of Beaufort Sea deltas, including temporal changes and trophic structure. Understanding benthic invertebrate communities provided a baseline for concurrent research on shorebird foraging ecology at these sites. We found that despite continuous year-to-year episodes of annual freezing, these estuarine deltas are populated by a range of invertebrates that represent both marine and freshwater assemblages. Freshwater organisms like Diptera and Oligochaeta not only survive this extreme event, but a marine invasion of infaunal organisms such as Amphipoda and Polychaeta rapidly recolonizes the delta mudflats following ice ablation. These delta sediments of sand, silt, and clay are fine in structure compared to sediments of other Beaufort Sea coastal intertidal habitats. The relatively depauperate invertebrate community that ultimately develops is composed of marine and freshwater benthic invertebrates. The composition of the infauna also reflects two strategies that make life on Beaufort Sea deltas possible: a migration of marine organisms from deeper lagoons to the intertidal and freshwater biota that survive the 9-month ice-covered period in frozen sediments. Stable isotopic analyses reveal that both infaunal assemblages assimilate marine and terrestrial sources of organic carbon. These results provide some of the first quantitative information on the infaunal food resources of shallow arctic estuarine systems and the long-term persistence of these invertebrate assemblages. Our data help explain the presence of large numbers of shorebirds in these habitats during the brief summer open-water period and their trophic importance to migrating waterfowl and nearshore populations of estuarine fishes that are the basis of subsistence lifestyles by native inhabitants of the Beaufort Sea coast.

Estuaries and Coasts↗

USGS2021

Long-term variation in polar bear body condition and maternal investment relative to a changing environment

In the Arctic, warming air and ocean temperatures have resulted in substantial changes to sea ice, which is primary habitat for polar bears ( Ursus maritimus ). Reductions in extent, duration, and thickness have altered sea ice dynamics, which influences the ability of polar bears to reliably access marine mammal prey. Because nutritional condition is closely linked to population vital rates, a progressive decline in access to prey or an increase in the energetic cost of accessing prey has the potential to adversely affect polar bear population dynamics. We examined long-term (1983–2015) patterns of spring body condition (indexed using residual body mass) and maternal investment (i.e., litter mass of cubs-of-the-year and yearlings; COY and YRL) of polar bears from Alaska’s southern Beaufort Sea to evaluate potential relationships with regional- and circumpolar-scale sea ice conditions and atmospheric patterns. The length of the summer open-water (OW) season (i.e., the period of time the sea ice is mostly absent from the continental shelf) increased at a rate of 18 days decade -1 over the study period. However, the OW season duration was not a strong determinant of spring residual body mass or litter mass. Residual body mass of independent (i.e., subadults and adults) female bears varied relative to age class, reproductive status, and the strength of the prior winter’s Arctic Oscillation (i.e., a circumpolar-scale mode of climate variability driven by long-term atmospheric patterns). Spring residual mass of independent males varied with age class and variation in wind speed (i.e., regional-scale short-term atmospheric patterns) during the winter of the year preceding capture. Over the study period, mean annual body mass of adult females unaccompanied by COY declined by 4 kg/ decade -1 , while no temporal trends were evident in the mean annual body mass of adult females with COY, adult males, and subadults. Litter mass of COY varied relative to capture date, maternal age class and mass, litter size, and year of capture. Litter mass of YRL varied with capture date, maternal age class and mass, litter size, variation in winter wind speed (the year of and year preceding capture), and the strength of the prior winter’s Arctic Oscillation. Mean annual litter mass of COY decreased at a rate of 2.6 kg decade -1 and declined 0.68 kg for every 10 kg reduction in maternal mass. No trend was evident in the mean annual litter mass of yearlings. These findings suggest a nuanced response of the southern Beaufort Sea polar bears to environmental change, where some demographic groups (e.g., adult males and subadults) are presently more resilient than others to changes in the Arctic marine ecosystem.

Alaska↗

USGS2020

The role of sand lances (Ammodytes sp.) in the Northwest Atlantic Ecosystem: A synthesis of current knowledge with implications for conservation and management

The American sand lance ( Ammodytes americanus , Ammodytidae) and the Northern sand lance ( A. dubius , Ammodytidae) are small forage fishes that play an important functional role in the Northwest Atlantic Ocean (NWA). The NWA is a highly dynamic ecosystem currently facing increased risks from climate change, fishing and energy development. We need a better understanding of the biology, population dynamics and ecosystem role of Ammodytes to inform relevant management, climate adaptation and conservation efforts. To meet this need, we synthesized available data on the (a) life history, behaviour and distribution; (b) trophic ecology; (c) threats and vulnerabilities; and (d) ecosystem services role of Ammodytes in the NWA. Overall, 72 regional predators including 45 species of fishes, two squids, 16 seabirds and nine marine mammals were found to consume Ammodytes . Priority research needs identified during this effort include basic information on the patterns and drivers in abundance and distribution of Ammodytes , improved assessments of reproductive biology schedules and investigations of regional sensitivity and resilience to climate change, fishing and habitat disturbance. Food web studies are also needed to evaluate trophic linkages and to assess the consequences of inconsistent zooplankton prey and predator fields on energy flow within the NWA ecosystem. Synthesis results represent the first comprehensive assessment of Ammodytes in the NWA and are intended to inform new research and support regional ecosystem‐based management approaches.

Northwest Atlantic↗

USGS2019

Tropical cyclones alter short-term activity patterns of a coastal seabird

Background Mobile organisms in marine environments are expected to modify their behavior in response to external stressors. Among environmental drivers of animal movement are long-term climatic indices influencing organism distribution and short-term meteorological events anticipated to alter acute movement behavior. However, few studies exist documenting the response of vagile species to meteorological anomalies in coastal and marine systems. Methods Here we examined the movements of Eastern brown pelicans ( Pelecanus occidentalis carolinensis ) in the South Atlantic Bight in response to the passage of three separate hurricane events in 2 years. Pelicans ( n = 32) were tracked with GPS satellite transmitters from four colonies in coastal South Carolina, USA, for the entirety of at least one storm event. An Expectation Maximization binary Clustering algorithm was used to discretize pelican behavioral states, which were pooled into ‘active’ versus ‘inactive’ states. Multinomial logistic regression was used to assess behavioral state probabilities in relation to changes in barometric pressure and wind velocity. Results Individual pelicans were more likely to remain inactive during tropical cyclone passage compared to baseline conditions generally, although responses varied by hurricane. When inactive, pelicans tended to seek shelter using local geomorphological features along the coastline such as barrier islands and estuarine systems. Conclusions Our telemetry data showed that large subtropical seabirds such as pelicans may mitigate risk associated with spatially-extensive meteorological events by decreasing daily movements. Sheltering may be related to changes in barometric pressure and wind velocity, and represents a strategy common to several other classes of marine vertebrate predators for increasing survival probabilities.

Florida, Georgia, North Carolina, South Carolina↗