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Data entry module and manuals for the Land Treatment Digital Library

Across the country, public land managers make decisions each year that influence landscapes and ecosystems within their jurisdictions. Many of these decisions involve vegetation manipulations, which often are referred to as land treatments. These treatments include removal or alteration of plant biomass, seeding of burned areas, application of herbicides, and other activities. Data documenting these land treatments usually are stored at local management offices in various formats. Therefore, anyone interested in the types and effects of land treatments across multiple jurisdictions must first assemble the information, which can be difficult if data discovery and organization involve multiple local offices. A centralized system for storing and accessing the data helps inform land managers when making policy and management considerations and assists scientists in developing sampling designs and studies. The Land Treatment Digital Library (LTDL) was created by the U.S. Geological Survey (USGS) as a comprehensive database incorporating tabular data, documentation, photographs, and spatial data about land treatments in a single system. It was developed over a period of several years and refined based on feedback from partner agencies and stakeholders. Currently, Bureau of Land Management (BLM) land treatment data are being entered by USGS personnel as part of a memorandum of understanding between the USGS and BLM. The LTDL has a website maintained by the USGS Forest and Rangeland Ecosystem Science Center where LTDL data can be viewed https://www.usgs.gov/apps/ltdl . The resources and information provided in this data series allow other agencies, organizations, and individuals to download an empty, stand-alone LTDL database to individual or networked computers. Data entered in these databases may be submitted to the USGS for possible inclusion in the online LTDL. Multiple computer programs are used to accomplish the objective of the LTDL. The support of an information-technology specialist or professionals familiar with Microsoft Access™, ESRI’s ArcGIS™, Python, Adobe Acrobat Professional™, and computer settings is essential when installing and operating the LTDL. After the program is operational, a critical element for successful data entry is an understanding of the difference between database tables and forms, and how to edit data in both formats. Complete instructions accompany the program, and they should be followed carefully to ensure the setup and operation of the database goes smoothly.

Data Series

USGS Water Data for Washington

The U.S. Geological Survey (USGS) has been investigating the water resources of Washington State since the latter part of the 19th century. During this time, demand for water has evolved from primarily domestic and stock needs to the current complex requirements for public-water supplies, irrigation, power generation, navigation, ecological needs, and numerous other uses. Water-resource data collected by the USGS in Washington have been, or soon will be, published by the USGS Washington Water Science Center (WAWSC) in numerous data and interpretive reports. Most of these reports are available online at the WAWSC web page http://wa.water.usgs.gov/pubs/

Fact Sheet

Geologic studies in Alaska by the U.S. Geological Survey, 1996

This collection of 12 papers continues the annual series of U.S. Geological Survey (USGS) reports on geologic investigations in Alaska. The annual volume presents results from new or ongoing studies in Alaska that are of interest to scientists in academia, industry, land and resource managers, and the general public. The Geological Studies in Alaska volume reports the results of studies that cover a broad spectrum of earth science topics from many parts of the state (fig. 1). The papers in this volume are organized under the topics Environment and Climate, Resources, and Geologic Framework, in order to reflect the objectives and scope of USGS programs that are currently active in Alaska. Environmental studies are the focus of two articles in this volume: One study addresses the relation between glaciers and aquatic habitat on the Kenai River and another study evaluates the geochemistry of water draining chromite deposits in Alaska. Two papers address mineral resources in southwestern Alaska including a geochemical study of the Fortyseven Creek prospect and a geological and geochemical study of the Stuyahok area. Eight geologic framework studies apply a variety of techniques to a wide range of subjects throughout Alaska, including biostratigraphy, geochemistry, geochronology, paleomagnetism, sedimentology, and tectonics. Two bibliographies at the end of the volume list reports about Alaska in USGS publications released in 1996 and reports about Alaska by USGS authors in non-USGS publications in 1996.

Alaska

Sea-level rise modeling handbook: Resource guide for coastal land managers, engineers, and scientists

Global sea level is rising and may accelerate with continued fossil fuel consumption from industrial and population growth. In 2012, the U.S. Geological Survey conducted more than 30 training and feedback sessions with Federal, State, and nongovernmental organization (NGO) coastal managers and planners across the northern Gulf of Mexico coast to evaluate user needs, potential benefits, current scientific understanding, and utilization of resource aids and modeling tools focused on sea-level rise. In response to the findings from the sessions, this sea-level rise modeling handbook has been designed as a guide to the science and simulation models for understanding the dynamics and impacts of sea-level rise on coastal ecosystems. The review herein of decision-support tools and predictive models was compiled from the training sessions, from online research, and from publications. The purpose of this guide is to describe and categorize the suite of data, methods, and models and their design, structure, and application for hindcasting and forecasting the potential impacts of sea-level rise in coastal ecosystems. The data and models cover a broad spectrum of disciplines involving different designs and scales of spatial and temporal complexity for predicting environmental change and ecosystem response. These data and models have not heretofore been synthesized, nor have appraisals been made of their utility or limitations. Some models are demonstration tools for non-experts, whereas others require more expert capacity to apply for any given park, refuge, or regional application. A simplified tabular context has been developed to list and contrast a host of decision-support tools and models from the ecological, geological, and hydrological perspectives. Criteria were established to distinguish the source, scale, and quality of information input and geographic datasets; physical and biological constraints and relations; datum characteristics of water and land components; utility options for setting sea-level rise and climate change scenarios; and ease or difficulty of storing, displaying, or interpreting model output. Coastal land managers, engineers, and scientists can benefit from this synthesis of tools and models that have been developed for projecting causes and consequences of sea-level change on the landscape and seascape.

Professional Paper

Refining the Baseline Sediment Budget for the Klamath River, California

Four dams in the Klamath River Hydroelectric Project (KHP) in Oregon and California (Figure 1) are currently scheduled to be removed over a period of a few weeks or months, beginning in January 2021. The Klamath dam removal will be the largest in the world by almost all measures, and is an unprecedented opportunity to advance science of river responses to such events. The KHP contains approximately 10-12 million cubic meters of mostly fine sediment and model estimates suggest approximately 1/3-2/3 of this volume is expected to be eroded from reservoirs. Much of this sediment is expected to be eventually transported by the river to, or through, the Klamath River Estuary, a distance of more than 300 kilometers. To improve the success of restoration activities following dam removal, agencies must understand the baseline conditions for biological, chemical, and physical processes, prior to the removal. We expect large changes in water quality (turbidity, suspended sediment, dissolved oxygen, temperature, and algal toxins) and in fish habitat in the Hydroelectric Reach and the main-stem of the Klamath River to the ocean. For example, modeled sediment concentrations in the Klamath River during dam removal were estimated exceed 10,000 – 15,000 mg/L, depending on streamflows, location, and the dam removal process, and to remain > 100 – 1000 mg/L for months at a time. Final time to achieve background concentrations post dam removal may take over two years (Reclamation, 2011). Plans to assess many of these changes post-dam removal are still being formulated.

California, Oregon

Action plan for restoration of coral reef coastal protection services: Case study example and workbook

This report was prepared by the U.S. Environmental Protection Agency (USEPA), Office of Research and Development, as part of the Air, Climate and Energy (ACE) research program, with support from Tetra Tech, Inc., and in collaboration with the National Oceanic and Atmospheric Administration, the U.S. Geological Survey, and The Nature Conservancy. The ACE research program provides scientific information and tools to support USEPA’s commitment to clean air, clean water and sustainable natural resources, even as environmental conditions change. A key component of this is the development of sound science to support adaptation. Adaptation involves preparing for and adjusting to the effects of climate change and its interactions with other global and local stressors. Because these effects are diverse, interactive, and difficult to predict, adapting management of natural resources in this context can be very challenging. Coral reefs—which provide valued ecosystem services such as fisheries, coastal protection, and tourism—are threatened by the effects of increased sea surface temperatures, sea level rise, and intensifying storms. These large-scale stressors are interacting with local stressors such as pollution, overfishing, and recreational misuse to drive ongoing and accelerating declines in coral reef ecosystems. Thus, there is a rising urgency to design and implement climate change adaptation measures that will enable reef resilience in the face of these changes. This includes accounting for, and adjusting to, the combined effects of climate change and local stressors in coral reef protection and restoration efforts. The action plan, example case study, and workbook found in this report demonstrate a structured process for integrating climate-smart design considerations into restoration planning using A Manager’s Guide to Coral Reef Restoration Planning and Design. The focus is a hypothetical coral reef restoration project that has a goal of recovering nature-based coastal protection services using restoration interventions. The intent is to provide readers with a completed example of how to use the Guide workbook to inform a draft action plan, centering on the topic of coastal protection as a burgeoning area of interest in coral reef science and management communities. The information in this hypothetical case study is not intended for direct use; rather, it provides a starting point for more detailed planning that would occur in specific places. And while a full review of the current literature on reef restoration methods is outside the scope of this report, readers are encouraged to use the examples herein as well as in the Guide as a jumping-off point for exploring the rapidly growing body of information on methods, techniques, successes, failures, monitoring challenges and future directions of coral reef restoration in a changing world. The workbook, together with the action plan, can serve as a valuable record of the planning thought process as well as a living document for adaptive management, to be updated through time as improved information becomes available.

EPA Report

Simulating the effect of climate change on stream temperature in the Trout Lake Watershed, Wisconsin

The potential for increases in stream temperature across many spatial and temporal scales as a result of climate change can pose a difficult challenge for environmental managers, especially when addressing thermal requirements for sensitive aquatic species. This study evaluates simulated changes to the thermal regime of three northern Wisconsin streams in response to a projected changing climate using a modeling framework and considers implications of thermal stresses to the fish community. The Stream Network Temperature Model (SNTEMP) was used in combination with a coupled groundwater and surface water flow model to assess forecasts in climate from six global circulation models and three emission scenarios. Model results suggest that annual average stream temperature will steadily increase approximately 1.1 to 3.2 °C (varying by stream) by the year 2100 with differences in magnitude between emission scenarios. Daily mean stream temperature during the months of July and August, a period when cold-water fish communities are most sensitive, showed excursions from optimal temperatures with increased frequency compared to current conditions. Projections of daily mean stream temperature, in some cases, were no longer in the range necessary to sustain a cold water fishery.

Wisconsin

Quantifying groundwater’s role in delaying improvements to Chesapeake Bay water quality

A study has been undertaken to determine the time required for the effects of nitrogen-reducing best management practices (BMPs) implemented at the land surface to reach the Chesapeake Bay via groundwater transport to streams. To accomplish this, a nitrogen mass-balance regression (NMBR) model was developed and applied to seven watersheds on the Delmarva Peninsula. The model included the distribution of groundwater return times obtained from a regional groundwater-flow (GWF) model, the history of nitrogen application at the land surface over the last century, and parameters that account for denitrification. The model was (1) able to reproduce nitrate concentrations in streams and wells over time, including a recent decline in the rate at which concentrations have been increasing, and (2) used to forecast future nitrogen delivery from the Delmarva Peninsula to the Bay given different scenarios of nitrogen load reduction to the water table. The relatively deep porous aquifers of the Delmarva yield longer groundwater return times than those reported earlier for western parts of the Bay watershed. Accordingly, several decades will be required to see the full effects of current and future BMPs. The magnitude of this time lag is critical information for Chesapeake Bay watershed managers and stakeholders.

Delaware, Maryland

Nest predation increases with parental activity: Separating nest site and parental activity effects

Alexander Skutch hypothesized that increased parental activity can increase the risk of nest predation. We tested this hypothesis using ten open-nesting bird species in Arizona, USA. Parental activity was greater during the nestling than incubation stage because parents visited the nest frequently to feed their young during the nestling stage. However, nest predation did not generally increase with parental activity between nesting stages across the ten study species. Previous investigators have found similar results. We tested whether nest site effects might yield higher predation during incubation because the most obvious sites are depredated most rapidly. We conducted experiments using nest sites from the previous year to remove parental activity. Our results showed that nest sites have highly repeatable effects on nest predation risk; poor nest sites incurred rapid predation and caused predation rates to be greater during the incubation than nestling stage. This pattern also was exhibited in a bird species with similar (i.e. controlled) parental activity between nesting stages. Once nest site effects are taken into account, nest predation shows a strong proximate increase with parental activity during the nestling stage within and across species. Parental activity and nest sites exert antagonistic influences on current estimates of nest predation between nesting stages and both must be considered in order to understand current patterns of nest predation, which is an important source of natural selection.

Arizona

Spatio-temporal dynamics of species richness in coastal fish communities

Determining patterns of change in species richness and the processes underlying the dynamics of biodiversity are of key interest within the field of ecology, but few studies have investigated the dynamics of vertebrate communities at a decadal temporal scale. Here, we report findings on the spado-temporal variability in the richness and composition of fish communities along the Norwegian Skagerrak coast having been surveyed for more than half a century. Using statistical models incorporating non-detection and associated sampling variance, we estimate local species richness and changes in species composition allowing us to compute temporal variability in species richness. We tested whether temporal variation could be related to distance to the open sea and to local levels of pollution. Clear differences in mean species richness and temporal variability are observed between fjords that were and were not exposed to the effects of pollution. Altogether this indicates that the fjord is an appropriate scale for studying changes in coastal fish communities in space and time. The year-to-year rates of local extinction and turnover were found to be smaller than spatial differences in community composition. At the regional level, exposure to the open sea plays a homogenizing role, possibly due to coastal currents and advection.

Proceedings of the Royal Society B: Biological Sci

Biology and impacts of Pacific Islands invasive species. 14. Sus scrofa the feral pig (Artiodactyla: Suidae)

Feral pigs ( Sus scrofa L.) are perhaps the most abundant, widespread, and economically significant large introduced vertebrate across the Pacific island region. Unlike many other nonnative invasive species, feral pigs have both cultural and recreational importance in the region, complicating their management. Today, Pacific island feral pigs are a mixture of several strains of domestic swine, Asiatic wild boar, and European wild boar. Due to their generalist diet and rooting behavior, feral pigs alter soils and watersheds and negatively impact native and nonnative flora and fauna. As a result, feral pigs have played a role in the extinction of several species of plants and animals on Pacific islands and have negative effects on both ecotourism and agricultural industries in the region. Despite numerous published studies on feral pigs in the Pacific island region, of which the majority include systematic analyses of original empirical data, some fundamental aspects of feral pig ecology remain poorly characterized, at least partly due to the remote and inaccessible environments that they often inhabit. To address these knowledge gaps, effort should be made to integrate research conducted outside the Pacific island region into local management strategies. This review summarizes the origins, history, ecology, environmental effects, and current management of feral pigs in the Pacific island region; integrates regional scientific findings with those of other insular and continental systems; and identifies current knowledge gaps requiring further research to inform the ecology and management of this impactful invasive species.

Hawai'i

Resource manager information needs regarding hydrologic regime shifts for the North Pacific Landscape Conservation

Landscape Conservation Cooperatives (LCCs) are a network of 22 public-private partnerships, defined by ecoregion, that share and provide science to ensure the sustainability of land, water, wildlife, and cultural resources in North America. LCCs were established by the U.S. Department of the Interior (DOI) in recognition of the fact that response to climate change must be coordinated on a landscape-level basis because important resources, ecosystem processes, and resource management challenges extend beyond most of the boundaries considered in current natural resource management. The North Pacific LCC (NPLCC) covers the range of the Pacific coastal temperate rainforest, including an area of 528,360 km 2 spanning 22 degrees of latitude from the Kenai Peninsula, Alaska, to Bodega Bay, California. The coverage area includes parts of four States, two Canadian provinces, and more than 100 Tribes and First Nation language groups. It extends from alpine areas at the crest of coastal mountains across subalpine, montane, and lowland forests to the nearshore marine environment. This wide range of latitudes and elevation zones; terrestrial, freshwater, and marine habitats; and complex jurisdictional boundaries hosts a diversity of natural resources and their corresponding management issues are equally diverse. As evidenced by the Science and Traditional Ecological Knowledge (S-TEK) Strategy guiding principles, identifying and responding to the needs of resource managers is key to the success of the NPLCC. To help achieve this goal of the NPLCC, the U.S. Geological Survey (USGS) has organized several workshops with resource managers and resource scientists to identify management information needs relevant to the priority topics identified in the S-TEK Strategy. Here, we detail the results from a first workshop to address the effects of changes in hydrologic regime on rivers, streams, and riparian corridors. The workshop focused on a subset of the full NPLCC geography and was structured to answer the following questions: What are the valued resources and services that may be affected by hydrologic regime changes in the region? What are the management goals for those resources? How is climate change anticipated to affect valued resources and goals? What adaptation strategies may managers use in response to anticipated changes in resources due to climate-related hydrologic change? What information is needed to inform and use management responses?

Open-File Report

Management case study: Tampa Bay, Florida

Tampa Bay, Florida, USA, is a shallow, subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of seagrasses and other selected habitat types, to support estuarine-dependent faunal guilds. Over the past three decades, nitrogen controls involving sources such as wastewater treatment plants, stormwater conveyance systems, fertilizer manufacturing and shipping operations, and power plants have been undertaken to meet these and other management objectives. Cumulatively, these controls have resulted in a 60% reduction in annual total nitrogen (TN) loads relative to earlier worse-case (latter 1970s) conditions. As a result, annual water-clarity and chlorophyll a targets are currently met in most years, and seagrass cover measured in 2008 was the highest recorded since 1950. Factors that have contributed to the observed improvements in Tampa Bay over the past several decades include the following: (1) Development of numeric, science-based water-quality targets to meet a long-term goal of restoring seagrass acreage to 1950s levels. Empirical and mechanistic models found that annual average chlorophyll a concentrations were a primary manageable factor affecting light attenuation. The models also quantified relationships between TN loads, chlorophyll a concentrations, light attenuation, and fluctuations in seagrass cover. The availability of long-term monitoring data, and a systematic process for using the data to evaluate the effectiveness of management actions, has allowed managers to track progress and make adaptive changes when needed. (2) Citizen involvement, that is, the initial reductions in TN loads, which occurred in the late 1970s and early 1980s, was a result of state regulations that were developed in response to citizens’ call for action. Improved water clarity and better fishing and swimming conditions were identified as primary goals by citizens again in the early 1990s, and led to development of numeric water-quality targets and seagrass restoration goals. More recent citizen actions, from pet waste campaigns to support of reductions in residential fertilizer use, are important elements of the nitrogen management strategy. (3) Collaborative actions, that is, in addition to numerous other collaborative ventures that have benefitted Tampa Bay, the public/private Nitrogen Management Consortium, which includes more than 40 participating organizations, has implemented over 250 nutrient-reduction projects. These projects have addressed stormwater treatment, fertilizer manufacturing and shipping, agricultural practices, reclaimed water use, and atmospheric emissions from local power stations, providing more than 300 tons of TN load reductions since 1995. (4) State and federal regulatory programs, that is, regulatory requirements, such as state statutes and rules requiring compliance with advanced wastewater treatment standards by municipal sewerage works, have played a key role in Tampa Bay management efforts. The technical basis and implementation plan of the Tampa Bay nitrogen management strategy have been developed in cooperation with state and federal regulatory agencies, and the strategy has been recognized by them as an appropriate tool for meeting water-quality standards, including federally mandated total maximum daily loads. Subsequent management efforts have focused on maintaining and extending those improvements in Tampa Bay’s environmental resources by addressing water and sediment quality and habitat protection and restoration. Implementation of a collaborative, watershed-based management process, driven by an integrated science approach, has played a central role in supporting progress toward the achievement of science-based estuary management goals.

Florida

Real-time specific surface area measurements via laser-induced breakdown spectroscopy

From healthcare to cosmetics to environmental science, the specific surface area (SSA) of micro- and mesoporous materials or products can greatly affect their chemical and physical properties. SSA results are also widely used to examine source rocks in conventional and unconventional petroleum resource plays. Despite its importance, current methods to measure SSA are often cumbersome, time-consuming, or require cryogenic consumables (e.g., liquid nitrogen). These methods are not amenable to high-throughput environments, have stringent sample preparation requirements, and are not practical for use in the field. We present a new application of laser-induced breakdown spectroscopy for rapid measurement of SSA. This study evaluates geological samples, specifically organic-rich oil shales, but the approach is expected to be applicable to many other types of materials. The method uses optical emission spectroscopy to examine laser-generated plasma and quantify the amount of argon adsorbed to a sample during an inert gas purge. The technique can accommodate a wide range of sample sizes and geometries and has the potential for field use. These advantages for SSA measurement combined with the simultaneous acquisition of composition information make this a promising new approach for characterizing geologic samples and other materials.

Energy and Fuels

Celebrating 125 years of the U.S. Geological Survey

In the 125 years since its creation, the U.S. Geological Survey (USGS) has provided the science information needed to make vital decisions and safeguard society. In this anniversary year, we celebrate the mission that has guided us, the people and traditions that have shaped us, and the science and technology that will lead us into the future. Through a wealth of long-term data and research, we have served the needs of society, the Earth, and its environment. This Circular captures a few of our past achievements, current research efforts, and hopes and challenges for the future.

Circular

Geoinformatics 2006--Abstracts

In order to facilitate the discovery, integration, and analysis of distributed data, geoscientists-in partnership with information technologists and computer scientists-have established the emerging science of geoinformatics. Geoinformatics 2006, an international conference that was attended by over 300 participants between May 10 and 12, 2006, represents the first nationally organized meeting whose primary goal was to provide a forum for the exchange of the most current research in geoinformatics.

Scientific Investigations Report

The impact of future changes in climate on breeding waterfowl pairs in the US Prairie Pothole Region

Millions of small (< 10 ha) waterbodies embedded in grassland and agroecosystems in midcontinental North America provide breeding habitat to an estimated 50–80% of North America’s migratory ducks. Tens of millions of dollars are invested annually to conserve and enhance upland and wetland habitats for breeding ducks by prioritizing locations predicted to have high densities of breeding pairs under average precipitation conditions. An implicit assumption of this approach is that the distribution of breeding habitat remains relatively static. Climate change is an identified risk to this strategy. To assess this assumption and plan for potential forthcoming conditions, we estimated changes in potential breeding duck pairs under different climate scenarios by combining results of 1) a mechanistic hydrology model that simulates ecosystem processes for a subset of wetlands distributed across the U.S. Prairie Pothole Region (USPPR); 2) four downscaled climate model projections at mid- and late-century time horizons; and 3) U.S. Fish and Wildlife Service multi-decadal datasets and predictive breeding waterfowl pair statistical models. We conducted virtual and in-person informational sessions with partners to inform them on the best practices of using downscaled global circulation models and approaches for climate scenario planning. This close coordination led to a joint presentation at a monthly North Central Climate Adaptation Science Center seminar. We are also co-developing simulated wetland- waterfowl responses under different climate futures for wetlands. Information from these robust predictions of waterfowl habitat and settling patterns in this region provides land-management agencies insights in prioritizing current conservation actions given uncertainty. In addition, understanding how many breeding pairs the USPPR might support in coming decades will likely influence overall breeding population sizes and sustainable harvest objectives across North America.

Iowa, Minnesota, Nebraska, North Dakota, South Dak

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

California