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Infection of the walleye, Stizostedion v. vitreum, of western Lake Erie with Bothriocephalus cuspidatus (Cooper)

In recent years appreciable changes have taken place in the biota and physiochemical conditions in Lake Erie. The accelerated eutrophication of the lake has been accompanied by the near disappearance of several fish species, e.g., blue pike (Stizostedion vitreum glaucum), lake herring (Coregonus artedi), lake trout (Salvelinus namaycush), sauger (Stizostedion canadense), and whitefish (Coregonus clupeaformis). Interest in the biology of the remaining species has increased as means have been sought to preserve their numbers in the lake. This report, which describes the caecal and intestinal parasites of the walleye, Stizostedion vitreum vitreum, is a contribution to the natural history of this fish in western Lake Erie. This study concerns: the type and degree of intestinal parasitic infestations in a single year class of walleyes during their first 3 years of life; seasonal changes in the incidence and maturity of the dominant parasite Bothriocephalus cuspidatus; and the effects of the infestations on the physical condition of the host.

Papers of the Michigan Academy of Science, Arts, a↗

Surveys for presence of Oregon spotted frog (Rana pretiosa): background information and field methods

The Oregon spotted frog (Rana pretiosa) is the most aquatic of the native frogs in the Pacific Northwest. The common name derives from the pattern of black, ragged-edged spots set against a brown or red ground color on the dorsum of adult frogs. Oregon spotted frogs are generally associated with wetland complexes that have several aquatic habitat types and sizeable coverage of emergent vegetation. Like other ranid frogs native to the Northwest, Oregon spotted frogs breed in spring, larvae transform in summer of their breeding year, and adults tend to be relatively short lived (3-5 yrs). Each life stage (egg, tadpole, juvenile and adult) has characteristics that present challenges for detection. Breeding can be explosive and completed within 1-2 weeks. Egg masses are laid in aggregations, often in a few locations in large areas of potential habitat. Egg masses can develop, hatch, and disintegrate in <2 weeks during warm weather. Tadpoles can be difficult to identify, have low survival, and spend most of their 3-4 months hidden in vegetation or flocculant substrates. Juveniles and adults are often difficult to capture and can spend summers away from breeding areas. Moreover, a substantial portion of extant populations are of limited size (<100 breeding adults), and field densities of all life stages are often low. An understanding of the biology of the species and use of multiple visits are thus important for assessing presence of Oregon spotted frogs. This report is meant to be a resource for USDA Region 6 Forest Service (FS) and OR/WA Bureau of Land Management (BLM) personnel tasked with surveying for the presence of Oregon spotted frogs. Our objective was to summarize information to improve the efficiency of field surveys and increase chances of detection if frogs are present. We include overviews of historical and extant ranges of Oregon spotted frog. We briefly summarize what is known of Oregon spotted frog habitat associations and review aspects of behavior and ecology that are likely to affect detectability in the field. We summarize characteristics that can help differentiate Oregon spotted frog life stages from other northwestern ranid frogs encountered during surveys. Appendices include examples of data collection formats and a protocol for disinfecting field gear.

Interagency Special Status / Sensitive Species Pro↗

An approach for filtering hyperbolically positioned underwater acoustic telemetry data with position precision estimates

Background Telemetry systems that estimate animal positions with hyperbolic positioning algorithms also provide a technology-specific estimate of position precision (e.g., horizontal position error (HPE) for the VEMCO positioning system). Position precision estimates (e.g., dilution of precision for a global positioning system (GPS)) have been used extensively to identify and remove positions with unacceptable measurement error in studies of terrestrial and surfacing aquatic animals such as turtles and seals. Few underwater acoustic telemetry studies report using position precision estimates to filter data in accordance with explicit data quality objectives because the relationship between the precision estimate and measurement error is not understood or not evaluated. A four-step filtering approach which incorporates data-filtering principles developed for GPS tracking of terrestrial animals is demonstrated. HPE was evaluated for its effectiveness to remove uncertain fish positions acquired from a new underwater fine-scale passive acoustic monitoring system. Results Four filtering objectives were identified based on the need for three sequential future analyses and four data quality criteria were developed for evaluating the performance of individual filters (step 1). The unfiltered, baseline position confidence from known-position test tags was considered to determine if filtering was necessary (step 2). An HPE filter cutoff of 8 was selected to meet the four criteria (step 3), and it was determined that one analysis may need to be adjusted for use with this dataset. The data quality objectives, criteria, and filter selection rationale were reported (step 4). Conclusions The use of position precision estimates that reflect the confidence in the positioning process should be considered prior to the use of biological filters that rely on a priori expectations of the subject’s movement capacities and tendencies. Position confidence goals should be determined based upon the needs of the research questions and analysis requirements versus arbitrary selection, in which filters of previous studies are adopted. Data filtering with this approach ensures that data quality is sufficient for the selected analyses and presents the opportunity to adjust or identify a different analysis in the event that the requisite precision was not attained. Ignoring these steps puts a practitioner at risk of reporting errant findings.

Animal Biotelemetry↗

Riparian and Associated Habitat Characteristics Related to Nutrient Concentrations and Biological Responses of Small Streams in Selected Agricultural Areas, United States, 2003-04

Physical factors, including both in-stream and riparian habitat characteristics that limit biomass or otherwise regulate aquatic biological condition, have been identified by previous studies. However, linking the ecological significance of nutrient enrichment to habitat or landscape factors that could allow for improved management of streams has proved to be a challenge in many regions, including agricultural landscapes, where many ecological stressors are strong and the variability among watersheds typically is large. Riparian and associated habitat characteristics were sampled once during 2003-04 for an intensive ecological and nutrients study of small perennial streams in five contrasting agricultural landscapes across the United States to determine how biological communities and ecosystem processes respond to varying levels of nutrient enrichment. Nutrient concentrations were determined in stream water at two different sampling times per site and biological samples were collected once per site near the time of habitat characterization. Data for 141 sampling sites were compiled, representing five study areas, located in parts of the Delmarva Peninsula (Delaware and Maryland), Georgia, Indiana, Ohio, Nebraska, and Washington. This report examines the available data for riparian and associated habitat characteristics to address questions related to study-unit contrasts, spatial scale-related differences, multivariate correlation structure, and bivariate relations between selected habitat characteristics and either stream nutrient conditions or biological responses. Riparian and associated habitat characteristics were summarized and categorized into 22 groups of habitat variables, with 11 groups representing land-use and land-cover characteristics and 11 groups representing other riparian or in-stream habitat characteristics. Principal components analysis was used to identify a reduced set of habitat variables that describe most of the variability among the sampled sites. The habitat characteristics sampled within the five study units were compared statistically. Bivariate correlations between riparian habitat variables and either nutrient-chemistry or biological-response variables were examined for all sites combined, and for sites within each study area. Nutrient concentrations were correlated with the extent of riparian cropland. For nitrogen species, these correlations were more frequently at the basin scale, whereas for phosphorus, they were about equally frequent at the segment and basin scales. Basin-level extents of riparian cropland and reach-level bank vegetative cover were correlated strongly with both total nitrogen and dissolved inorganic nitrogen (DIN) among multiple study areas, reflecting the importance of agricultural land-management and conservation practices for reducing nitrogen delivery from near-stream sources. When sites lacking segment-level wetlands were excluded, the negative correlation of riparian wetland extent with DIN among 49 sites was strong at the reach and segment levels. Riparian wetland vegetation thus may be removing dissolved nutrients from soil water and shallow groundwater passing through riparian zones. Other habitat variables that correlated strongly with nitrogen and phosphorus species included suspended sediment, light availability, and antecedent water temperature. Chlorophyll concentrations in seston were positively correlated with phosphorus concentrations for all sites combined. Benthic chlorophyll was correlated strongly with nutrient concentrations in only the Delmarva study area and only in fine-grained habitats. Current velocity or hydraulic scour could explain correlation patterns for benthic chlorophyll among Georgia sites, whereas chlorophyll in seston was correlated with antecedent water temperature among Washington and Delmarva sites. The lack of any consistent correlation pattern between habitat characteristics and organic material density (ash-free dry mass)

Scientific Investigations Report↗

Water-resources of western Douglas County, Oregon

In western Douglas County, Quaternary coastal dune sands and marine terrace deposits may have the best potential for ground-water development. Yields of 200 gallons per minute have been reported from wells completed in Quaternary fluvial deposits along the lower Umpqua River. The entire area is underlain by Tertiary marine sediments that yield quantities of water barely adequate for domestic use. On the basis of wells sampled and the constituents analyzed, ground-water quality was generally good, but the recommended criteria level of 300 micrograms per liter for iron was exceeded in about one-third of the samples. Average annual runoff from eight streams in western Douglas County was estimated to range from 2.4 cubic feet per second per square mile for Elk Creek to 6.8 cubic feet per second per square mile for Scholfield Creek. The estimated 7-day , 20-year low flow ranges from 0.01 cubic foot per second per square mile for Weatherly Creek to 3.6 cubic feet per second per square mile for the Smith River. The dissolved-solids of the Umpqua River is small and stable, with little seasonal and yearly variation. Likewise, the eight small streams in the project area have small dissolved-solids but have noticeably higher nitrite plus nitrate nitrogen concentrations than those of the Umpqua River. All the lakes in the project area have dissolved-solids concentrations of less than 100 milligrams per liter and, except for Loon Lake, have limited phosphorus available for algal production. Tahkenitch and Elbow Lakes are considered to be the most active in terms of biological productivity.

Oregon↗

Pesticides in stream sediment and aquatic biota— Current understanding of distribution and major influences

This report summarizes a comprehensive analysis of existing information on pesticides in bed sediment and aquatic biota of United States rivers and streams: their geographic distribution, sources, trends, environmental fate, and biological significance. It is one of a four-part series that synthesizes current knowledge and understanding of pesticides in the nation’s water resources as part of the National Water-Quality Assessment Program.

Fact Sheet↗

Distribution, habitat, size, and color pattern of Cnemidophorus lemniscatus (Sauria: Teiidae) on Cayo Cochino Pequeño, Honduras

Cayo Cochino Peque&ntilde;o is a 0.64-km 2 Caribbean island in the Cayos Cochinos archipelago, Department of Islas de la Bah&iacute;a, Honduras. One published report noted the presence of the rainbow whiptail ( Cnemidophorus lemniscatus ) on Cayo Cochino Peque&ntilde;o, but nothing is known about the biology of this insular population. During a part of the dry season in July and August 2004, we used drift fences, pitfall traps, and separate observational transects to elucidate the distribution and habitat use of C. lemniscatus on the island. The only population of this species was located in a narrow coastal zone (width to 60 m and length to 450 m) on the southern half of the eastern windward side of the island. We analyzed the percentage of the canopy cover and the percentage of 4 ground coverage types along 2 transects 200 m long in this area to understand the basis of the suitability of the habitat for C. lemniscatus . Descriptively, the area harboring this species on Cayo Cochino Peque&ntilde;o consisted of the remnants of a coconut palm grove with low-lying herbaceous vegetation and grasses, in which a mosaic of small, open areas of sandy soil and coral fragments, with or without accumulations of debris, were the foci of lizard activities. Also observed in this habitat were 2 individuals of the brown racer ( Dryadophis melanolomus ), an actively foraging snake and likely predator on C. lemniscatus . Data obtained on rainbow whiptails captured in pitfall traps and subsequently released were used to determine the size and color patterns of hatchlings and adult males and females.

Cayo Cochino Pequeno↗

Molecular genetics at the Fort Collins Science Center

The Fort Collins Science Center operates a molecular genetic and systematics research facility (FORT Molecular Ecology Laboratory) that uses molecular genetic tools to provide genetic information needed to inform natural resource management decisions. For many wildlife species, the data generated have become increasingly important in the development of their long-term management strategies, leading to a better understanding of species diversity, population dynamics and ecology, and future conservation and management needs. The Molecular Ecology Lab serves Federal research and resource management agencies by developing scientifically rigorous research programs using nuclear, mitochondrial and chloroplast DNA to help address many of today's conservation biology and natural resource management issues.

Fact Sheet↗

Increase in nuisance blooms and geographic expansion of the freshwater diatom Didymosphenia geminata

The diatom Didymosphenia geminata (Lyngbye) Schmidt is emerging as an organism with an extraordinary capacity to impact stream ecosystems on a global scale. In recent years, streams in New Zealand, North America, Europe, and Asia have been colonized by unprecedented masses of &ldquo;didymo&rdquo; and its extracellular stalks (fig. 1). This diatom is able to dominate stream surfaces by covering up to 100 percent of substrate with thicknesses of greater than 20 cm, greatly altering physical and biological conditions within streams. This species is expanding its geographic range in North America and the rate that nuisance blooms are reported by the public and local media are increasing, yet little scientific investigation of the phenomenon in North America has been initiated.

Open-File Report↗

Virginia flow-ecology modeling results—An initial assessment of flow reduction effects on aquatic biota

Background The U.S. Geological Survey (USGS), in cooperation with the Virginia Department of Environmental Quality (DEQ), reviewed a previously compiled set of linear regression models to assess their utility in defining the response of the aquatic biological community to streamflow depletion. As part of the 2012 Virginia Healthy Watersheds Initiative (HWI) study conducted by Tetra Tech, Inc., for the U.S. Environmental Protection Agency (EPA) and Virginia DEQ, a database with computed values of 72 hydrologic metrics, or indicators of hydrologic alteration (IHA), 37 fish metrics, and 64 benthic invertebrate metrics was compiled and quality assured. Hydrologic alteration was represented by simulation of streamflow record for a pre-water-withdrawal condition (baseline) without dams or developed land, compared to the simulated recent-flow condition (2008 withdrawal simulation) including dams and altered landscape to calculate a percent alteration of flow. Biological samples representing the existing populations represent a range of alteration in the biological community today. For this study, all 72 IHA metrics, which included more than 7,272 linear regression models, were considered. This extensive dataset provided the opportunity for hypothesis testing and prioritization of flow-ecology relations that have the potential to explain the effect(s) of hydrologic alteration on biological metrics in Virginia streams.

Virginia↗

Water-quality, bed-sediment, and biological data (October 1992 through September 1993) and statistical summaries of water-quality data (March 1985 through September 1993) for streams in the upper Clark Fork basin, Montana

Water, bed sediment, and biota were sampled in streams from Butte to below Missoula as part of a program to characterize aquatic resources in the upper Clark Fork basin of western Montana. Water-quality data were obtained periodically at 16 stations during October 1992 through September 1993 (water year 1993); daily suspended-sediment data were obtained at six of these stations. Bed-sediment and biological data were obtained at 11 stations in August 1993. Sampling stations were located on the Clark Fork and major tributaries. The primary constituents analyzed were trace elements associated with mine tailings from historic mining and smelting activities. Water-quality data include concentra- tions of major ions, trace elements, and suspended sediment in samples collected periodically during water year 1993. A statistical summary of water- quality data is provided for the period of record at each station since 1985. Daily values of streamflow, suspended-sediment concentration, and suspended-sediment discharge are given for six stations. Bed-sediment data include trace- element concentrations in the fine and bulk fractions. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Quality-assurance data are reported for analytical results of water, bed sediment, and biota.

Open-File Report↗

Effects of the upper Taum Sauk Reservoir embankment breach on the surface-water quality and sediments of the East Fork Black River and the Black River, southeastern Missouri–2006–07

On December 14, 2005, a 680-foot wide section of the upper reservoir embankment of the Taum Sauk pump-storage hydroelectric powerplant located in Reynolds County, Missouri, suddenly failed. This catastrophic event sent approximately 1.5 billion gallons of water into the Johnson's Shut-Ins State Park and into the East Fork Black River, and deposited enormous quantities of rock, soil, and vegetation in the flooded areas. Water-quality data were collected within and below the impacted area to study and document the changes to the riverene system. Data collection included routine, event-based, and continuous surface-water quality monitoring as well as suspended- and streambed-sediment sampling. Surface water-quality samples were collected and analyzed for a suite of physical and chemical constituents including: turbidity; nutrients; major ions such as calcium, magnesium, and potassium; total suspended solids; total dissolved solids; trace metals such as aluminum, iron, and lead; and suspended-sediment concentrations. Suspended-sediment concentrations were used to calculate daily sediment discharge. A peculiar blue-green coloration on the water surface of the East Fork Black River and Black River was evident downstream from the lower reservoir during the first year of the study. It is possible that this phenomenon was the result of 'rock flour' occurring when the upper reservoir embankment was breached, scouring the mountainside and producing extremely fine sediment particles, or from the alum-based flocculent used to reduce turbidity in the lower reservoir. It also was determined that no long-term effects of the reservoir embankment breach are expected as the turbidity and concentrations of trace metals such as total recoverable aluminum, dissolved aluminum, dissolved iron, and suspended-sediment concentration graphically decreased over time. Larger concentrations of these constituents during the beginning of the study also could be a direct result of the alum-based flocculent used in the lower reservoir. Suspended-sediment concentrations and turbidity measurements were largest at the site downstream from the lower reservoir. This is because of the large amounts of debris deposited in the lower reservoir from the breach, which in turn were redeposited into the East Fork Black River during releases. When these constituents were plotted over time, the concentrations decreased and were similar to the other two sites in the study. Trend analyses were studied at one site with historical data. No major trends were discovered for streamflow, turbidity, suspended-sediment concentrations, or suspended-sediment discharges before or after the event. Although long-term effects of the elevated turbidity, major trace metals, and suspended sediments in the study area as a result of the reservoir embankment breach are not expected, there could possibly be other effects not measured during this study that could potentially affect the surface-water quality, such as loss of riparian habitat, changes in biological ecosystems, and large-scale reworking of sediments.

Missouri↗

Investigation of potential factors controlling benthic algae in the upper White River Basin, Colorado, 2018–21

Nuisance levels of benthic filamentous green algae are becoming increasingly common in surface waters of Colorado and the western United States. In 2018 the U.S. Geological Survey began a study in cooperation with the White River and Douglas Creek Conservation Districts, Colorado River Basin Salinity Control Forum, and the Colorado River Water Conservation District to collect and analyze physical, chemical, and biological information for the upper White River Basin in Colorado and investigate causes of benthic algal blooms in the basin. This report (1) presents site-specific data including water temperature, riparian canopy cover, streambed particle size, and algal biomass and community composition; (2) describes the potential for streambed movement during spring runoff using physical channel characteristics and peak streamflow velocities; and (3) explains the results of a linear mixed-effects model used to test hypotheses about the influence of physical and chemical factors in explaining the occurrence of algal blooms across the basin. Benthic algal biomass ranged from 0.7 to 309 milligrams per square meter during the summer (July–August) from 2018 through 2021 and exceeded the Colorado Department of Public Health and Environment criteria of 150 milligrams per square meter on four occasions, in 2018. Four genera of filamentous green algae were identified in the upper White River Basin, including Cladophora , Stigeoclonium , Ulothrix , and Spirogyra . Many genera of cyanobacteria were present, including some capable of producing toxins and taste and odor compounds. The nuisance diatom Didymosphenia geminata , commonly referred to as didymo, was found at two sites on the South Fork White River and along the main stem White River. Hypotheses pertaining to the influence of measured variables on algal biomass were tested with a linear mixed-effects model. Median rock size and mean August water temperature had significant positive effects, meaning that greater bed stability and higher mean August water temperatures result in greater algal biomass. Total nitrogen to total phosphorus ratios had a significant negative effect on algal biomass, meaning that more nitrogen-limiting conditions, or greater phosphorus availability, corresponded to greater algal biomass. Streamflow and water temperature data at White River above Coal Creek near Meeker, Colo., were used to assess possible causes of bloom conditions across years, including when algal blooms were first studied in the basin during 2016 and 2017. Early or low-magnitude peak streamflow conditions were not prerequisites for algal bloom occurrence. Conversely, relatively large, late, and long-lasting peak streamflows, such as those measured in 2019, may limit algal blooms during the same year and into subsequent years, as evidenced by extremely low algal biomass in 2019 and 2020. The broad spatial extent of bloom conditions indicates that the factors contributing to the occurrence of algal blooms are likely basinwide. Findings from this multiyear study indicate that the effects caused by larger peak streamflow, including movement of the streambed, may be the dominant control on the occurrence of an algal bloom. The findings also indicate that in the absence of disturbance other resources, including substrate size, water temperature, and nutrient availability, moderate algal biomass.

Colorado↗

Water and the South Florida environment

Ecological problems are a major concern to Florida as well as to the Nation. National attention was focused on these problems in September 1968, when the Port Authority of Dade County began to con- struct a jetport for supersonic aircraft on a 39-square-mile tract 6 miles north of Everglades National Park and on the east edge of the Big Cypress Swamp. Conservation groups and citizens raised questions as to the effects of a regional jetport and the attendant satellite growth on the water resources and biological communities of the National Park. The Department of the Interior began studies to investigate the situation. One study, Leopold (1969), reported on the unfavorable ecological effects of the attendant satellite growth. Then Secretary of the Interior, Walter J. Hickel, directed the U.S. Geological Survey to study the water resources of the Big Cypress to determine which parts of the Big Cypress contribute the major part of the water necessary to maintain adequate water supplies for Everglades National Park. This was done in a report by Klein and others (1970). At about the same time, the Departments of interior and Transportation, the State of Florida, and the Dade County Port Authority con-curred in assigning to the Secretary of the Interior certain responsibilities for planning, developing, and coordinating an ecological study of south Florida. A primary objective of the ecological study is to provide information that will assist in the formulation of land-use policy consistent with the protection of the environment of Everglades National Park, the adjacent estuaries, and the public water supplies. The part of the investigation describing the surface-water and ground-water resources of south Florida was assigned to the Geological Survey. The quantity and quality of surface water and ground water and their interrelation with estuarine and marine waters are here considered. Also considered are the problems, present or future, related to the hydrologic environment that involve human, animal, and plant life. Changes taking place, apparent trends, and projections for the future are also considered, as well as alternatives for water management. The Geological Survey effort began in January 1971, when aerial photography and selected qualitative hydrologic data were obtained. However, most of the information upon which this report Is based was obtained by the Geological Survey in cooperative programs with several local, State, and Federal agencies since about 1940. The long-term support of the U.S. Army Corps of Engineers, the National Park Service, U.S. Navy, Florida Department of Natural Resources, Central and Southern Florida Flood Control District, Dade, Broward, Palm Beach and Collier Counties, Miami and Miami Beach, Ft. Lauderdale, Naples and others in the collection of data is gratefully acknowledged. A prolonged drought throughout south Florida from September 1970 to May 1971 accentuated the importance and timeliness of the study. The drought brought about a readvance of sea-water intrusion in many coastal areas, which necessitated restrictions on water use. The effect of drought on the regional water supply, continued population growth and increased water demands, and deterioration of the water quality in many of the canals and waterways of the urban areas accentuated the need for improved water management and land-use planning. As a result of the water crisis, the Governor of Florida called a special conference in September 1971. The conference, attended by foremost scientific and government personnel, proposed creation of an agency that would develop and implement comprehensive land and water-use plans for south Florida that would minimize environmental degradation.

Florida↗

Chemical and biological quality of water in part of the Everglades, southeastern Florida

A comprehensive monitoring network was established in a part of the Everglades to evaluate the quality of water being delivered to Everglades National Park. Physical, chemical, and biological parameters were determined in surface water, bottom sediment, and bulk precipitation (rainfall and dry fallout). The geology of the area, bottom sediment, bulk precipitation, natural, urban, and agricultural runoff, and the characteristics of the hydrologic system in the Everglades influence the type and concentration of each chemical constituent and how it affects the water quality. The quality of surface water in the agricultural area between Lake Okeechobee and the water conservation areas is markedly different from that of other surface water in southeastern Florida. In general, the water in this area is higher in concentrations of most chemical constituents. Man has engaged in cultural activities, both agricultural and urban, which have affected the water quality in the northern and eastern segments of the area of investigation. The quality of the water improves, however, as it flows to the south and east because there is minimal input from man's activities and many of the constituents are assimilated by plants, sorbed on organic material and clay in the bottom sediments, and entrapped within the sediments. Dilution by rainfall and concentration by evapotranspiration are also important factors that influence the quality of surface water in the area of investigation. The area of investigation in the Everglades is a sink for macronutrients, trace metals, and chlorinated-hydrocarbon insecticides. These constituents do not move through the system freely. They become tied up in various complexes and for that reason, the water being delivered to Everglades National Park is of better quality than the water entering the northern edge of the water conservation areas. The various physical and biological processes and chemical reactions combine to improve the water quality as the water flows southward. The data presented in this report may be used as a baseline for determination of future changes in water quality at the several places in the Everglades where recurrent sampling of rainfall, surface water, and bottom sediments was undertaken during the course of the investigation.

Florida↗