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Coastal and marine science of the U.S. Geological Survey in St. Petersburg, Florida

The U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC) in St. Petersburg, Florida, investigates processes that form and alter coastal and marine environments and the implications of these processes related to natural hazards, resource sustainability, and environmental change. The center is one of three facilities serving the mission of the USGS Coastal and Marine Hazards and Resources Program, an initiative authorized by Congress in 1962 that serves as the primary Federal program for marine geology and physical science research and is responsible for the Nation’s entire coastal and marine landscape. The center’s staff conducts scientific research around the globe to describe and deepen understanding of the processes that influence coastal and marine ecosystems, such as sandy beaches and barrier islands, salt marshes and estuaries, coral reefs, and the open ocean from the continental shelf to the deep sea. The center includes a diverse workforce of scientists, technicians, administrators, analysts, and technology and information specialists. This team works collaboratively to conduct and share robust scientific research. This document provides a glimpse into the center’s work to better understand the processes shaping coastal and marine environments across the Nation.

Florida

Submarine ground-water discharge and its role in coastal processes and ecosystems

Submarine ground-water discharge (SGD) has recently been recognized as a phenomenon that can strongly influence coastal water and geochemical budgets and drive ecosystem change. For example, the discharge of nutrient-enriched ground water into coastal waters may contribute significantly to eutrophication and blooms of harmful algae. Similarly, the quantity of SGD can also directly affect the availability of fresh water to coastal communities, impact fragile coastal ecosystems such as estuaries and coral reefs, and influence geomorphology of shoreline features. Moore raised awareness of the global importance of SGD and much effort has been devoted to developing new tracer techniques and methods for the identification and quantification of SGD. Because the discharge of coastal ground water commonly occurs as diffuse seepage rather than focused discharge through identifiable springs, assessing SGD has remained difficult for both oceanographers and hydrologists. Through national and international research programs, Burnett, Moore, Charette, and others have developed a rigorous, systematic approach for quantifying SGD using a wide assortment of tracers and methods. Intercalibration experiments, such as those conducted in coastal waters off Australia, Brazil, and Long Island, NY, demonstrate that careful measurements can accurately quantify SGD, confirm some of the driving mechanisms (e.g. climatic and tidal forcing), and constrain the spatial and temporal scales at which these mechanisms operate. Now that approaches for rigorously quantifying SGD are becoming better established, scientists can now begin to investigate the wide variety of coastal processes affected by SGD.

Open-File Report

EAARL submarine topography: Biscayne National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, and event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida

Coastal circulation and sediment dynamics in Hanalei Bay, Kaua'i, Hawaii. Part III: Studies of sediment toxicity

Toxicity tests are commonly conducted as a measure of the bioavailability of toxic chemicals to biota in an environment. Chemical analyses alone are insufficient to determine whether contaminants pose a threat to biota. Porewater toxicity tests are extremely sensitive to a broad range of contaminants in marine environments and provide ecologically relevant data on sensitive life stages. The inclusion of porewater toxicity testing as an additional indicator of sediment quality provides a more comprehensive picture of contaminant effects in these sensitive habitats. In this study purple-spined sea urchin (Arbacia punctulata) fertilization and embryological development porewater toxicity tests were used to evaluate the sediments collected from the coastal environment around Hanalei Bay, Kaua’i, Hawaii. These tests have been used previously to assess the bioavailability of contaminants associated with sediments in the vicinity of coral reefs.

Hawaii

EAARL topography: Dry Tortugas National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, ad event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida

EAARL topography: Assateague Island National Seashore

This Web site contains 58 lidar-derived bare earth topography maps and GIS files for the Assateague Island National Seashore. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Maryland

EAARL topography: Thomas Stone National Historic Site

This Web site contains Lidar-derived topography (first return and bare earth) maps and GIS files for Thomas Stone National Historic Site in Maryland. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Maryland

EAARL topography – Gateway National Recreation Area, Sandy Hook Unit

This Web site contains Lidar-derived topography (bare earth) maps and GIS files for the Sandy Hook Unit within Gateway National Recreation Area in New Jersey. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

New York

EAARL topography: George Washington Birthplace National Monument

This Web site contains Lidar-derived topography (first return and bare earth) maps and GIS files for George Washington Birthplace National Monument in Virginia. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS), Northeast Coastal and Barrier Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Virginia

EAARL topography: Gulf Islands National Seashore: Mississippi

This Web site contains 30 lidar-derived bare earth topography maps and GIS files for the Gulf Islands National Seashore-Mississippi. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS) Gulf Coast Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Mississippi

EAARL Topography-Sagamore Hill National Historic Site

This Web site contains lidar-derived bare earth (BE) and first return (FR) topography maps and GIS files for the Sagamore Hill National Historic Site. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS), Northeast Coastal and Barrier Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Sagamore Hill National Historic Site

EAARL submarine topography: Florida Keys National Marine Sanctuary

This Web site contains 46 Lidar-derived submarine topography maps and GIS files for the Florida Keys National Marine Sanctuary. These Lidar-derived submarine topographic maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Oceanic and Atmospheric Administration (NOAA), Remote Sensing Division, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography within cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Florida

EAARL topography: Gulf Islands National Seashore: Florida

This Web site contains 33 lidar-derived bare earth topography maps and GIS files for the Gulf Islands National Seashore-Florida. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS), Gulf Coast Network, Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Florida

EAARL Topography-Padre Island National Seashore

This Web site contains 116 Lidar-derived bare earth topography maps and GIS files for Padre Island National Seashore-Texas. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Florida Integrated Science Center (FISC) St. Petersburg, Florida, the National Park Service (NPS) Gulf Coast Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Texas

EAARL topography-Colonial National Historical Park

These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, Florida Integrated Science Center (FISC) St. Petersburg, the National Park Service (NPS) Inventory and Monitoring Program, Northeast Coastal and Barrier Network, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs, barrier islands, and various nearshore coastal environments for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Virginia

Investigation of coastal hydrogeology utilizing geophysical and geochemical tools along the Broward County coast, Florida

Geophysical (CHIRP, boomer, and continuous direct-current resistivity) and geochemical tracer studies (continuous and time-series 222 Radon) were conducted along the Broward County coast from Port Everglades to Hillsboro Inlet, Florida. Simultaneous seismic, direct-current resistivity, and radon surveys in the coastal waters provided information to characterize the geologic framework and identify potential groundwater-discharge sites. Time-series radon at the Nova Southeastern University National Coral Reef Institute (NSU/NCRI) seawall indicated a very strong tidally modulated discharge of ground water with 222 Rn activities ranging from 4 to 10 disintegrations per minute per liter depending on tidal stage. CHIRP seismic data provided very detailed bottom profiles (i.e., bathymetry); however, acoustic penetration was poor and resulted in no observed subsurface geologic structure. Boomer data, on the other hand, showed features that are indicative of karst, antecedent topography (buried reefs), and sand-filled troughs. Continuous resistivity profiling (CRP) data showed slight variability in the subsurface along the coast. Subtle changes in subsurface resistivity between nearshore (higher values) and offshore (lower values) profiles may indicate either a freshening of subsurface water nearshore or a change in sediment porosity or lithology. Further lithologic and hydrologic controls from sediment or rock cores or well data are needed to constrain the variability in CRP data.

Florida

Accuracy of EAARL lidar ground elevations using a bare-earth algorithm in marsh and beach grasses on the Chandeleur Islands, Louisiana

The NASA Experimental Advanced Airborne Lidar (EAARL) is an airborne lidar (light detection and ranging) instrument designed to map coastal topography and bathymetry. The EAARL system has the capability to capture each laser-pulse return over a large signal range and can digitize the full waveform of the backscattered energy. Because of this ability to capture the full waveform, the EAARL system can map features such as coral reefs, beaches, coastal vegetation, and trees, where extreme variations in the laser backscatter are caused by different physical and optical characteristics. Post-processing of the EAARL data is accomplished using the Airborne Lidar Processing System (ALPS) (Nayegandhi and others, 2009). In ALPS, the waveform of the lidar is analyzed and split into first and last returns. The 'first returns' are indicative of vegetation-canopy height, or bare ground in the absence of vegetation, whereas 'last returns' typically represent 'bare-earth' elevations under vegetation. To test the accuracy of the first-return and bare-earth EAARL data, topographic and vegetation height surveys were conducted in the Chandeleur Islands, concurrent with an EAARL lidar survey and an aerial oblique-photographic survey from September 20 to 27, 2006. The Chandeleur Islands are a north-south-oriented chain of low-lying islands located approximately 100 kilometers east of the city of New Orleans, Louisiana. The islands are narrow north-south strips of land with marsh on the landward (west sides) and sandy beaches on their gulfward (east sides). Prior to Hurricane Katrina, which made landfall at Buras, Louisiana, as a Category 3 storm on August 29, 2005, prominent, 3- to 4-meter-high sand dunes were present in the northern Chandeleurs. The storm removed them, leaving post-storm island elevations of generally less than 2 meters above 0.0 NAVD88. This report is part of a study of the impact of Hurricane Katrina on the Chandeleur Islands using pre-storm and post-storm lidar surveys to detect morphological changes. The islands lost over 80 percent of their land area during Hurricane Katrina, and in the first 2 years following Katrina, many of the islands experienced continued shoreline retreat (Sallenger and others, 2007). In addition to land-area losses, the loss of dunes made the islands increasingly vulnerable to future storm impacts. The U.S. Geological Survey, along with partners in the Louisiana Department of Natural Resources and the U.S. Army Corps of Engineers, continues to monitor changes in shoreline position, land area, and elevation in the Chandeleur Islands.

Open-File Report

USGS-NPS Servicewide Benthic Mapping Program (SBMP) workshop report

Executive Summary The National Park Service (NPS) Inventory and Monitoring (I&M) Program recently allocated funds to initiate a benthic mapping program in ocean and Great Lakes parks in alignment with the NPS Ocean Park Stewardship 2007-2008 Action Plan. Seventy-four (ocean and Great Lakes) parks, spanning more than 5,000 miles of coastline, many affected by increasing coastal storms and other natural and anthropogenic processes, make the development of a Servicewide Benthic Mapping Program (SBMP) timely. The resulting maps and associated reports will be provided to NPS managers in a consistent servicewide format to help park managers protect and manage the 3 million acres of submerged National Park System natural and cultural resources. Of the 74 ocean and Great Lakes park units, the 40 parks with submerged acreage will be the focus in the early years of the SBMP. The NPS and U.S. Geological Survey (USGS) convened a workshop (June 3-5, 2008) in Lakewood, CO. The assembly of experts from the NPS and other Federal and non-Federal agencies clarified the needs and goals of the NPS SBMP and was one of the key first steps in designing the benthic mapping program. The central needs for individual parks, park networks, and regions identified by workshop participants were maps including bathymetry, bottom type, geology, and biology. This workshop, although not an exhaustive survey of data-acquisition technologies, highlighted the more promising technologies being used, existing sources of data, and the need for partnerships to leverage resources. Workshop products include recommended classification schemes and management approaches for consistent application and products similar to other long-term NPS benthic mapping efforts. As part of the SBMP, recommendations from this workshop, including application of an improved version of the Coastal and Marine Ecological Classification Standard (CMECS), will be tested in several pilot parks. In 2008, in conjunction with the findings of this workshop, the NPS funded benthic mapping projects in Glacier Bay National Park and Preserve, Golden Gate National Recreational Area, Sleeping Bear Dunes National Lakeshore, Gulf Islands National Seashore, Virgin Islands National Park, and Virgin Islands Coral Reef National Monument. Full design and protocols of the SBMP based on the findings of this workshop are detailed in a second document dedicated to the subject.

Open-File Report