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At least 469 records · Page 26Linked to original sources
USGS2018

Fish community responses to submerged aquatic vegetation in Maumee Bay, Western Lake Erie

Submerged aquatic vegetation (SAV) in clearwater systems simultaneously provides habitat for invertebrate prey and acts as refugia for small fishes. Many fishes in Lake Erie rely on shallow, heavily vegetated bays as spawning grounds and the loss or absence of which is known to reduce recruitment in other systems. The Maumee River and Maumee Bay, which once had abundant macrophyte beds, have experienced a decline of SAV and an increase in suspended solids (turbidity) over the last century due to numerous causes. To compare fish communities in open‐water (turbid) and in SAV (clearer water) habitats in this region, which is designated by the U.S. Environmental Protection Agency as an Area of Concern, and to indicate community changes that could occur with expansion of SAV habitat, we sampled a 300‐ha sector of northern Maumee Bay that contained both habitats. Using towed neuston nets through patches of each habitat, we determined that areas of SAV contained more species and a different species complex (based on the Jaccard index and the wetland fish index), than did the open‐water habitat (averaging 8.6 versus 5 species per net trawl). The SAV habitat was dominated by centrarchids, namely Largemouth Bass Micropterus salmoides, Bluegill Lepomis macrochirus, and Black Crappie Pomoxis nigromaculatus. Open‐water habitat was dominated by Spottail Shiner Notropis hudsonius, Gizzard Shad Dorosoma cepedianum, and White Perch Morone americana, an invasive species. These results indicate that restoration efforts aimed at decreasing turbidity and increasing the distribution of SAV could cause substantive shifts in the fish community and address important metrics for assessing the beneficial use impairments in this Area of Concern.

Michigan, Ohio↗
USGS2010

Procedures for conducting underwater searches for invasive mussels (Dreissena sp.)

Zebra mussels (Dreissena polymorpha) were first detected in the Great Lakes in 1988. They were likely transported as larvae or young adults inside the ballast tanks of large ocean-going ships originating from Europe. Since their introduction, they have spread throughout the Eastern, Midwestern, and Southern United States. In 2007, Quagga mussels (Dreissena rostriformis bugensis) were found in the Western United States in Lake Mead, Nevada; part of the Lower Colorado River Basin. State and Federal managers are concerned that the mussels (hereafter referred to as dreissenid mussels or mussels) will continue to spread to the Columbia River Basin and have a major impact on the region?s ecosystem, water delivery infrastructure, hydroelectric projects, and the economy. The transport and use of recreational watercraft throughout the Western United States could easily result in spreading mussels to the Columbia River Basin. The number of recreational watercraft using Lake Mead can range from 350 to 3,500 a day (Bryan Moore, National Park Service, oral commun., June 21, 2008). Because recreational watercrafts are readily moved around and mussels may survive for a period of time when they are out of the water, there is a high potential to spread mussels from Lake Mead to other waterways in the Western United States. Efforts are being made to prevent the spread of mussels; however, there is great concern that these efforts will not be 100 percent successful. When prevention efforts fail, early detection of mussels may provide an opportunity to implement rapid response management actions to minimize the impact. Control and eradication efforts are more likely to be successful if they are implemented when the density of mussels is low and the area of infestation is small. Once the population grows and becomes established, the mussels are extremely difficult, if not impossible, to control. Although chemicals may be used to kill the mussels, the chemicals that are currently available also can kill other aquatic life. Early implementation of containment and eradication efforts requires getting reliable information to confirm the location of the infestation. One way to get this information is through the use of properly trained SCUBA divers. This document provides SCUBA divers with the necessary information to conduct underwater searchers for mussels. However, using SCUBA divers to search for mussels over a large geographic area is relatively expensive and inefficient. Early detection monitoring methods can be used to optimize the use of SCUBA divers. Early detection monitoring can be accomplished by collecting water samples or deploying artificial settlement substrates (fig. 1). Water samples are used to look for free-swimming larval mussels (called veligers). Because the veligers cannot be identified with the naked eye, the water samples are sent to a laboratory where they are examined under a microscope and/or analyzed using molecular techniques to detect veligers. To detect the presences of adult mussels, artificial substrates are deployed and periodically retrieved to determine if mussels have settled on the substrate. If veligers or adults are identified, SCUBA divers can be deployed to confirm the presence of mussels.

Open-File Report↗
USGS2010

The potential influence of changing climate on the persistence of salmonids of the inland west

The Earth's climate warmed steadily during the 20th century, and mean annual air temperatures are estimated to have increased by 0.6°C (Intergovernmental Panel on Climate Change, 2007). Although many cycles of warming and cooling have occurred in the past, the most recent warming period is unique in its rate and magnitude of change (Siegenthaler and others, 2005) and in its association with anthropogenic emissions of greenhouse gases (Intergovernmental Panel on Climate Change , 2007). The climate in the western United States warmed in concert with the global trend but at an accelerated rate (+0.8°C during the 20th century; Saunders and others, 2008). The region could also prove especially sensitive to future changes because the relatively small human population is growing rapidly, as are demands on limited water supplies. Regional hydrological patterns are dominated by seasonal snow accumulation at upper elevations. Most of the region is relatively dry, and both terrestrial and aquatic ecosystems are strongly constrained b y water availability (Barnett and others, 2008; Brown and others, 2008). Stream environments are dynamic and climatically extreme, and salmonid fishes are the dominant elements of the native biodiversity (McPhail and Lindsey, 1986; Waples and others, 2008). Salmonids have broad economic and ecologic importance, but a century of intensive water resource development, nonnative fish stocking, and land use has significantly reduced many populations and several taxa are now protected under the Endangered Species Act (Thurow and others, 1997; Trotter, 2008). Because salmonids require relatively pristine, cold water environments and are often isolated in headwater habitats, members of this group may be especially vulnerable to the effects of a warming climate (Keleher and Rahel, 1996; Rieman and others, 2007; Williams and others, 2009). Warming during the 20th century drove a series of environmental trends that have profound implications for many aspects of salmonid habitat, including disturbance regimes such as wildfire, and unfavorable changes to thermal and hydrologic properties of aquatic systems. Warmer air temperatures have been associated with decreased winter snow accumulations, have accelerated snowmelt, and have advanced the timing of peak runoff by several days to weeks across most of western North America (Stewart and others, 2005; Barnett and others, 2008). Less snow and earlier runoff decrease aquifer recharge, make less water available for groundwater inputs to streams, and are contributing to widespread decreases in summer low flows (Stewart and others, 2005; Rood and others, 2008; Luce and Holden 2009). Interannual variability in stream flow is increasing, as is the persistence of multi-year extreme conditions (McCabe and others, 2004; Pagano and Garen 2005). In many areas of western North America, flood risks have increased in association with warmer temperatures during the 20th century (Hamlet and Lettenmaier, 2005). Streams where midwinter temperatures are near freezing have proven especially sensitive to increased flooding because of associated transitional hydrological patterns (mixtures of rainfall and snowmelt) and propensity for occasional rain-on-snow events to rapidly melt winter snowpack and generate large floods (Hamlet and Lettenmaier, 2005). Stream temperatures in many areas are increasing (Peterson and Kitchell, 2001; Morrison and others, 2002; Bartholow, 2005; Kaushal and others, 2010), due to both air temperature increases and reduced summer flows that make streams more sensitive to warmer air temperatures (Isaak and others, 2010). In recent decades, wildfires have become more common across much of the western United States during periods of more frequent droughts (Westerling and others, 2006; Hoerling and Eischeid, 2007), and local stream temperature can increase in postfire environments (Gresswell, 1999; Dunham and others, 2007). Fire-related temperature increase within streams is commonly a transient phenomenon, lasting only until riparian vegetation has recovered (Gresswell, 1999); however, ongoing climate change could preclude recovery to higher stature, prefire vegetation types in some areas (McKenzie and others, 2004; van Mantgem and Stephenson, 2007), resulting in a loss of critical riparian shading. Additionally, when wildfires occur in steep mountain topographies, the vegetation that stabilize s soils on hillslopes is often killed and landslides become more prevalent (Gresswell, 1999). Landslides int o stream channels form debris flows composed of sediment slurries and dead trees that can scour channels to bedrock and further exacerbate stream heating, delay recovery of riparian areas, or extirpate fish populations (Gresswell, 1999; May and Gresswell, 2003; Dunham and others, 2007). Changes in stream environments will shift habitat distributions, sometimes unpredictably, in both time and space for many salmonid fishes. Water temperature fundamentally influences aquatic ecosystem health because distribution, reproduction, fitness, and survival of ectothermic organisms are inextricably linked to the thermal regime of the environment. Historically, research has focused on defining lethal thermal limits of salmonids (Eaton and others, 1995; Selong and others, 2001; Todd and others, 2008); however, water temperature is known to be important in biological processes at a variety of spatial scales and levels of biological organization (Rahel and Olden, 2008; McCullough and others, 2009). For instance, trout are affected directly by water temperature through feeding, metabolism, and growth rates, and indirectly by factors such as prey availability and species interactions (Wehrly and others, 2007; Rahel and Olden, 2008). Where cold water temperatures currently limit habitat suitability and distributions of some species (for example, at the highest and most northerly distributional extents; Nakano and others, 1996; Coleman and Fausch, 2007), a warming climate may gradually increase the quality and extent of suitable habitat. Over time, previously constrained populations are expected to expand into these new habitats and increase in number. Some evidence suggests this may already be happening in Alaska, where streams in recently deglaciated areas are being colonized by emigrants from nearby salmon and char populations (Milner and others, 2000). Unfortunately, many of the sensitive salmonid species that are often the focus of western managers are unlikely to benefit from future water temperature increases. Warmer stream temperatures will facilitate invasion by nonnative species that are broadly established in downstream areas into upstream areas where they will compete with native species (Rieman and others, 2006; Rahel and Olden, 2008; Fausch and others, 2009). In other cases, warmer stream temperatures will render thermally suitable habitats unsuitable in downstream areas and effect net losses of habitat because upstream distributions are often constrained by streams that are too small or steep (Hari and others, 2006; Isaak and others, 2010). Both scenarios are realistic for fish species like bull trout ( Salvelinus confluentus ) (Rieman and others, 2006; Rieman and others, 2007), the various subspecies of cutthroat trout ( Oncorhynchus clarkii ) (Williams and others, 2009), Gila trout ( Oncorhynchus gilae gilae ) (Kennedy and others, 2008), and Apache trout ( Oncorhynchus gilae apache ) (Rinne and Minckley, 1985; Carmichael and others, 1993). As native species are increasingly confined to smaller and more isolated habitats by a gradually warming climate, the effects of wildfires (whether related to lethal changes in water quality during a fire, channel debris flows, or chronic postfire warming ) could have greater proportional effects on remaining habitats (for example, Brown and others, 2001; Rieman and others, 2007). If these changes were accompanied by additional hydrologic alterations associated with changes to the magnitude, frequency, duration, timing, and rate of change of discharge patterns (Jager and others, 1999; Henderson and others, 2000), populations may begin to lose some of their historic resilience and become ever more susceptible to local extirpations. As dramatic and extensive as climatic and environmental trends are for salmonid habitats, global climate models (GCMs) project that many of these trends will continue and even accelerate until at least the middle of the 21st century (Intergovernmental Panel on Climate Change, 2007). Current projections suggest mean annual air temperatures will increase by an additional 1–3°C, and early indications are that climate trajectory is at the higher end of this range (Pittock, 2006; Raupach and others, 2007). Although predicted changes vary considerably, even the most conservative estimates suggest a warming rate that will be twice that observed during the 20th century. Projections for the midcentury are most certainly due to the effects of greenhouse gases already emitted or predicted in the short term, uncertainties of the effects of longer-term greenhouse gas emissions, short-term climate cycles, and process errors associated with climate models (Cox and Stephenson, 2007). Projections of changes in total precipitation are less certain than those for air temperatures, but most GCMs project relatively small changes in the Northwest, with the exception of slightly drier summer periods (Mote and others, 2008; Karl and others, 2009). In the Southwest, however, significant decreases (such as 15–30 percent ) are projected during most periods of the year, and this area is one of the few for which Intergovernmental Panel on Climate Change (2007) precipitation projections have a high level of certainty (Hoerling and Eischeid, 2007; Karl and others, 2009). Clearly, managers of native salmonids in the wester n United States should consider adjusting management strategies to accommodate a warmer and possibly drier future (Williams and others, 2009). Tools are needed to forecast where important changes may occur and how conservation efforts should be prioritized. In this Open-File Report, we document our initial efforts in this regard for 10 species and subspecies of inland trout and Montana Arctic grayling ( Thymallus arcticus ) across the western United States.

Arizona, California, Colorado, Idaho, Montana, Nev↗
USGS2017

Responses of invasive silver and bighead carp to a carbon dioxide barrier in outdoor ponds

Resource managers need for effective methods to prevent the movement of silver ( Hypophthalmichthys molitrix ) and bighead carp ( H. nobilis ) from the Mississippi River basin into the Laurentian Great Lakes. In this study, we evaluated dissolved carbon dioxide (CO 2 ) as a barrier and deterrent to silver (278 ± 30.5 mm) and bighead (212 ± 7.7 mm) carp movement in continuous-flow outdoor ponds. As a barrier, CO 2 significantly reduced upstream movement but was not 100% effective at blocking fish passage. As a deterrent, we observed a significant shift away from areas of high CO 2 relative to normal movement before and after injection. Carbon dioxide concentrations varied across the pond during injection and reached maximum concentrations of 74.5±1.9 mg/L CO 2 ; 29 532 – 41 393 µatm at the site of injection during three independent trials. We conclude that CO 2 altered silver and bighead carp movement in outdoor ponds and recommend further research to determine barrier effectiveness during field applications.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2021

Distribution of tiger salamanders in northern Sonora, Mexico: Comparison of sampling methods and possible implications for an endangered subspecies

Many aquatic species in the arid USA-Mexico borderlands region are imperiled, but limited information on distributions and threats often hinders management. To provide information on the distribution of the Western Tiger Salamander ( Ambystoma mavortium ), including the USA-federally endangered Sonoran Tiger Salamander ( Ambystoma mavortium stebbinsi ), we used traditional (seines, dip-nets) and modern (environmental DNA [eDNA]) methods to sample 91 waterbodies in northern Sonora, Mexico, during 2015-2018. The endemic Sonoran Tiger Salamander is threatened by introgressive hybridization and potential replacement by another sub-species of the Western Tiger Salamander, the non-native Barred Tiger Salamander ( A. m. mavortium ). Based on occupancy models that accounted for imperfect detection, eDNA sampling provided a similar detection probability (0.82 [95% CI: 0.56-0.94]) as seining (0.83 [0.46-0.96]) and much higher detection than dip-netting (0.09 [0.02-0.23]). Volume of water filtered had little effect on detection, possibly because turbid sites had greater densities of salamanders. Salamanders were estimated to occur at 51 sites in 3 river drainages in Sonora. These results indicate tiger salamanders are much more widespread in northern Sonora than previously documented, perhaps aided by changes in land and water management practices. However, because the two subspecies of salamanders cannot be reliably distinguished based on morphology or eDNA methods that are based on mitochondrial DNA, we are uncertain if we detected only native genotypes or if we documented recent invasion of the area by the non-native sub-species. Thus, there is an urgent need for methods to reliably distinguish the subspecies so managers can identify appropriate interventions.

Sonora↗
USGS2014

The interactive effects of climate change, riparian management, and a non-native predators on stream-rearing salmon

Predicting how climate change is likely to interact with myriad other stressors that threaten species of conservation concern is an essential challenge in aquatic ecosystems. This study provides a framework to accomplish this task in salmon-bearing streams of the northwestern United States, where land-use related reductions in riparian shading have caused changes in stream thermal regimes, and additional warming from projected climate change may result in significant losses of coldwater fish habitat over the next century. Predatory non-native smallmouth bass have also been introduced into many northwestern streams and their range is likely to expand as streams warm, presenting an additional challenge to the persistence of threatened Pacific salmon. The goal of this work was to forecast the interactive effects of climate change, riparian management, and non-native species on stream-rearing salmon, and to evaluate the capacity of restoration to mitigate these effects. We intersected downscaled global climate forecasts with a local-scale water temperature model to predict mid- and end-of-century temperatures in streams in the Columbia River basin; we compared one stream that is thermally impaired due to the loss of riparian vegetation and another that is cooler and has a largely intact riparian corridor. Using the forecasted stream temperatures in conjunction with fish-habitat models, we predicted how stream-rearing Chinook salmon and bass distributions would change as each stream warmed. In the highly modified stream, end-of-century warming may cause near total loss of Chinook salmon rearing habitat and a complete invasion of the upper watershed by bass. In the less modified stream, bass were thermally restricted from the upstream-most areas. In both systems, temperature increases resulted in higher predicted spatial overlap between stream-rearing Chinook salmon and potentially predatory bass in the early summer (2-4-fold increase) and greater abundance of bass. We found that riparian restoration could prevent the extirpation of Chinook salmon from the more altered stream, and could also restrict bass from occupying the upper 31 km of salmon rearing habitat. The proposed methodology and model predictions are critical for prioritizing climate-change adaptation strategies before salmonids are exposed to both warmer water and greater predation risk by non-native species.

Oregon↗
USGS2023

Predatory impacts of invasive Blue Catfish in an Atlantic coast estuary

Objective Predatory invasive fishes may consume species of management interest and alter food webs. Blue Catfish Ictalurus furcatus is a large-bodied, salinity-tolerant species that exhibits broad diet breadth and preys on species of both conservation concern and fisheries management interest. To better understand the ecological consequences of the establishment of Blue Catfish fisheries, estimates of predatory impacts are needed. Methods Using a Monte Carlo simulation, we integrated abundance estimates, diet information, and consumption-to-biomass ratios to estimate population-level Blue Catfish predation for a large Chesapeake Bay tributary along the mid-Atlantic coast of the United States, the James River. Result Population-level annual predation estimates by Blue Catfish exceeded 100 metric tons for several species or taxa of interest, including an estimated 400.7 metric tons (95% CI = 272.6–613.2) of blue crab Callinectes sapidus . Prey species abundances were unknown and thus limited opportunities to evaluate prey population responses. For instance, effects of Blue Catfish on blue crab populations remain unknown without tributary-specific estimates of blue crab abundance, but comparisons to landings data suggests that Blue Catfish predation on blue crab in the James River may be low compared with harvest. Conclusion Estimation of Blue Catfish predatory effects may inform development of management goals and objectives that balance diverse stakeholder interests. This work provides beneficial information to assess trade-offs of Blue Catfish fisheries and their effects on coastal aquatic resources.

Virginia↗
USGS2020

Rapid early development and feeding benefits an invasive population of lake trout

Lake trout ( Salvelinus namaycush ) were discovered in Yellowstone Lake in 1994 and their population expanded dramatically despite intensive suppression. The lake is species-depauperate, with no major lake trout embryo predators. We hypothesized that without this predation threat, lake trout free embryo feeding and growth may be greater than in their native range, leading to increased survival of age-0 individuals and rapid population growth. We compared length, developmental rate, and feeding patterns of lake trout free embryos captured at a spawning site in Yellowstone Lake with free embryos captured in their native range in Lake Champlain, Vermont. More embryos were feeding, contained more food, and were significantly longer at the same developmental stages in Yellowstone Lake. With an abundance of available food and minimal threat of predation, free embryos remained on the spawning site in Yellowstone Lake later into the summer than in Lake Champlain and achieved a greater maximum length before they dispersed. Greater food consumption and associated growth likely leads to high survival of lake trout free embryos in Yellowstone Lake, contributing to rapid population growth.

New York, Quebec, Vermont, Wyoming↗
USGS2021

Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms

Advances in environmental DNA (eDNA) methodologies have led to improvements in the ability to detect species and communities in aquatic environments, yet the majority of studies emphasize biological diversity at the species level by targeting variable sites within the mitochondrial genome. Here, we demonstrate that eDNA approaches also have the capacity to detect intraspecific diversity in the nuclear genome, allowing for assessments of population-level genetic diversity and estimates of the number of genetic contributors in a sample. Using a panel of microsatellite loci, we evaluated intraspecific genetic diversity in the round goby (Neogobius melanostomus) using eDNA samples from experimental mesocosms. First, we tested the similarity between eDNA and individual tissue-based estimates of allele frequencies. Subsequently, we used a likelihood-based DNA mixture framework to estimate the number of unique genetic contributors in mesocosm eDNA samples and in simulated mixtures of alleles. Allele frequencies from eDNA accurately reflected allele frequencies from genotyped round goby tissue samples, indicating nuclear markers can be reliably amplified from water samples under controlled conditions. DNA mixture analyses were able to estimate the number of genetic contributors from eDNA samples and simulated mixtures of DNA from up to 58 individuals, with the degree of positive or negative bias dependent on the filtering scheme of low-frequency alleles. This study is the first to document the application of eDNA and multiple amplicon-based methods to obtain intraspecific nuclear genetic information and estimate the absolute abundance of a species in mesocosms. With proper validation, this approach has the potential to advance non-invasive survey methods to characterize populations and broadens the application of eDNA methodologies to inform population-level management objectives.

New York↗
USGS2002

Hydrology, vegetation, and soils of riverine and tidal floodplain forests of the lower Suwannee River, Florida, and potential impacts of flow reductions

A study relating hydrologic conditions, soils, and vegetation of floodplain forests to river flow was conducted in the lower Suwannee River, Florida, from 1996 to 2000. The study was done by the U.S. Geological Survey in cooperation with the Suwannee River Water Management District to help determine the minimum flows and levels required for wetlands protection. The study area included forests within the 10-year floodplain of the Suwannee River from its confluence with the Santa Fe River to the tree line (lower limit of forests) near the Gulf of Mexico, and covered 18,600 hectares (ha) of forests, 75 percent of which were wetlands and 25 percent uplands. The floodplain was divided into three reaches, riverine, upper tidal, and lower tidal, based on changes in hydrology, vegetation, and soils with proximity to the coast. The Suwannee River is the second largest river in Florida in terms of average discharge. Median flow at the confluence of the Suwannee and Santa Fe Rivers is approximately 181 cubic meters per second (m3/s) or 6,480 cubic feet per second (ft3/s) (1933-99). At the upper end of the riverine reach, river stages are unaffected by tides and have a typical annual range of 4.1 meters (m). Tides affect river stages at low and medium flows in the upper tidal reach, and at all flows in the lower tidal reach. Median tidal range at the mouth of the Suwannee River is about 1 m. Salinity of river water in the lower tidal reach increases with decreasing flow and proximity to the Gulf of Mexico. Vertically averaged salinity in the river near the tree line is typically about 5 parts per thousand at medium flow. Land-surface elevation and topographic relief in the floodplain decrease with proximity to the coast. Elevations range from 4.1 to 7.3 m above sea level at the most upstream riverine transect and from 0.3 to 1.3 m above sea level on lower tidal transects. Surface soils in the riverine reach are predominantly mineral and dry soon after floods recede except in swamps. Surface soils in upper and lower tidal reaches are predominantly organic, saturated mucks. In the downstream part of the lower tidal reach, conductivities of surface soils are high enough (greater than 4 milli-mhos per centimeter) to exclude many tree species that are intolerant of salinity. Species richness of canopy and subcanopy plants in wetland forests in the lower Suwannee River is high compared to other river floodplains in North America. A total of 77 tree, shrub, and woody vine species were identified in the canopy and subcanopy of floodplain wetland forests (n = 8,376). Fourteen specific forest types were mapped using digitized aerial photographs, defined from vegetative sampling, and described in terms of plant species composition. For discussion purposes, some specific wetland types were combined, resulting in three general wetland forest types for each reach. Riverine high bottomland hardwoods have higher canopy species richness than all other forest types (40-42 species), with Quercus virginiana the most important canopy tree by basal area. The canopy composition of riverine low bottomland hardwoods is dominated by five species with Quercus laurifolia the most important by basal area. Riverine swamps occur in the lowest and wettest areas with Taxodium distichum the most important canopy species by basal area. Upper tidal bottomland hardwoods are differentiated from riverine forests by the presence of Sabal palmetto in the canopy. Upper tidal mixed forests and swamps are differentiated from riverine forests, in part, by the presence of Fraxinus profunda in the canopy. Nyssa aquatica, the most important canopy species by basal area in upper tidal swamps, is absent from most forests in the lower tidal reach where its distribution is probably restricted by salinity. Hydric hammocks, a wetland type that is rare outside of Florida, are found in the lower tidal reach and are flooded every 1-2 years by either storm surge or river floods. Lower tidal mixed forests and swamps have continuously saturated muck soils and are differentiated from upper tidal forests, in part, by the presence of Magnolia virginiana in the canopy. Lower tidal swamps have the highest density of canopy trees (about 1,200 trees per hectare) of all floodplain forest types, with Nyssa biflora the most important canopy species by basal area. Water use in the Suwannee River basin in Florida and Georgia is expected to increase over time because of anticipated growth and development in the region and adjacent areas. If increased water consumption reduced river flow, river stage would decrease and salinity would increase, resulting in a variety of impacts on forest composition, wetland biogeochemical processes, and fish and wildlife habitat. Forest composition in the floodplain is primarily determined by duration of inundation and saturation, depth and frequency of floods, and salinity. Long-term flow reductions would result in shallower flood depths, allowing drier and more tidal species to invade wetland forests of the riverine and upper tidal reaches. If flows were reduced 2.8-56 m3/s (100-2,000 ft3/s), an estimated 52-1,140 ha, respectively, would change to a drier forest type, and 36-788 ha, respectively, would change to a more tidal forest type. The greatest impacts would occur in swamps, where important swamp species such as Taxodium distichum and Nyssa aquatica could have increased competition not only from drier or more tidal species, but also from opportunistic bottomland hardwoods or invasive exotic species. Reduced flows could also result in a conversion of some wetland forests to uplands, increasing vulnerability to human disturbance, and decreasing tree basal area, species richness, and diversity of wildlife habitat. Salt-intolerant species would move upstream if flow reductions increased salinity in the lower tidal reach. If flows were reduced 2.8-56 m3/s (100-2,000 ft3/s), the area of forests along the tree line that would convert to marshes is estimated to be 72-618 ha, respectively. Loss of forests at the tree line would result in a loss of complex vertical structural diversity and woody micro-habitats that are used by many animals. These changes are already occurring due to sea level rise, but changes would occur more quickly if salinities increased as a result of flow reductions. The amount of inundated and saturated area in the floodplain forest of the riverine reach would decrease if flows were reduced. The greatest impacts would result from flow reductions that occurred at low flows, when inundated and saturated areas in the floodplain are limited. Drier conditions would result in oxidation of organic matter in swamp soils, which would reduce the soil's water-holding capacity and ability to retain water during droughts. Drier soils would increase vulnerability of the floodplain to fire and could also reduce the ability of riverine forests to remove nitrates and other pollutants from river water. Loss of inundated areas resulting from flow reductions at low flow would eliminate aquatic habitats that are critical to the survival of floodplain fishes and aquatic invertebrates, and are important to many other animals that use the floodplain. If flow reductions occurred during high flows, main channel fishes could decrease in diversity and abundance because they are seasonally dependent on flooded forests for food, shelter, and reproduction. In addition, aquatic organisms in the river and estuary could be adversely affected because they depend on particulate organic detritus and other floodplain exports as food sources.

Florida↗
USGS2014

Lake Ontario zooplankton in 2003 and 2008: Community changes and vertical redistribution

Lake-wide zooplankton surveys are critical for documenting and understanding food web responses to ecosystem change. Surveys in 2003 and 2008 during the binational intensive field year in Lake Ontario found that offshore epilimnetic crustacean zooplankton declined by a factor of 12 (density) and factor of 5 (biomass) in the summer with smaller declines in the fall. These declines coincided with an increase in abundance of Bythotrephes and are likely the result of direct predation by, or behavioral responses to this invasive invertebrate predator. Whole water column zooplankton density also declined from 2003 to 2008 in the summer and fall (factor of 4), but biomass only declined in the fall (factor of 2). The decline in biomass was less than the decline in density because the average size of individual zooplankton increased. This was due to changes in the zooplankton community composition from a cyclopoid/bosminid dominated community in 2003 to a calanoid dominated community in 2008. The increase in calanoid copepods was primarily due to the larger species Limnocalanus macrurus and Leptodiaptomus sicilis . These cold water species were found in and below the thermocline associated with a deep chlorophyll layer. In 2008, most of the zooplankton biomass resided in or below the thermocline during the day. Increased importance of copepods in deeper, colder water may favor Cisco and Rainbow Smelt over Alewife because these species are better adapted to cold temperatures than Alewife.

Lake Ontario↗
USGS2022

Controlling invasive fish in fluctuating environments: Model analysis of common carp (Cyprinus carpio) in a shallow lake

Climate change can act to facilitate or inhibit invasions of non-native species. Here, we address the influence of climate change on control of non-native common carp (hereafter, carp), a species recognized as one of the “world's worst” invaders across the globe. Control of this species is exceedingly difficult, as it exhibits rapid population growth and compensatory density dependence. In many locations where carp have invaded, however, climate change is altering hydrologic regimes and may influence population demography and efficacy of human control efforts. To further evaluate these processes, we employed a modified version of an age-based population model (CarpMOD), to investigate how hydrologic variability (change in lake area) influences carp population dynamics and control efforts in Malheur Lake, southeastern Oregon, USA. We explored how changes in lake area influence carp populations under three control scenarios: (1) no carp removal, (2) carp removal during low water years, and (3) carp removal during all years. Lake area fluctuations strongly influenced carp populations and the efficacy of carp control. Modeled carp biomass peaked when the lake transitioned from high-to-low levels, and carp biomass declined when lake area transitioned from low-to-high. Removing carp during low water periods—when fish were concentrated into a smaller area—reduced carp populations almost as much as removing carp every year. Furthermore, the effectiveness of control efforts increased with the prevalence and severity of low lake conditions (longer durations of very low lake area). These simulations suggest that a drier climate may naturally decrease carp populations and make them easier to control. However, drier conditions may also negatively affect aquatic ecosystems and potentially have a greater impact than non-native species themselves.

Oregon↗
USGS2019

Decreased atmospheric nitrogen deposition in eastern North America: Predicted responses of forest ecosystems

Historical increases in emissions and atmospheric deposition of oxidized and reduced nitrogen (N) provided the impetus for extensive, global-scale research investigating the effects of excess N in terrestrial and aquatic ecosystems, with several regions within the Eastern Deciduous Forest of the United States found to be susceptible to negative effects of excess N. The Clean Air Act and associated rules have led to decreases in emissions and deposition of oxidized N, especially in eastern U.S., representing a research challenge and opportunity for ecosystem ecologists and biogeochemists. The purpose of this paper is to predict changes in the structure and function of North American forest ecosystems in a future of decreased N deposition. Hysteresis is a property of a system wherein output is not a strict function of corresponding input, incorporating lag, delay, or history dependence, particularly when the response to decreasing input is different from the response to increasing input. We suggest a conceptual hysteretic model predicting varying lag times in recovery of soil acidification, plant biodiversity, soil microbial communities, forest carbon (C) and N cycling, and surface water chemistry toward pre-N impact conditions. Nearly all of these can potentially respond strongly to reductions in N deposition. Most responses are expected to show some degree of hysteresis, with the greatest delays in response occurring in processes most tightly linked to “slow pools” of N in wood and soil organic matter. Because experimental studies of declines in N loads in forests of North America are lacking and because of the expected hysteresis, it is difficult to generalize from experimental results to patterns expected from declining N deposition. These will likely be long-term phenomena, difficult to distinguish from other, concurrent environmental changes, including elevated atmospheric CO 2 , climate change, reductions in acidity, invasions of new species, and long-term vegetation responses to past disturbance.

Environmental Pollution↗
USGS2006

The chlorinated AHR ligand 3,3′,4,4′,5-pentachlorobiphenyl (PCB126) promotes reactive oxygen species (ROS) production during embryonic development in the killifish ( Fundulus heteroclitus )

Exposure to dioxin-like chemicals that activate the aryl hydrocarbon receptor (AHR) can result in increased cellular and tissue production of reactive oxygen species (ROS). Little is known of these effects during early fish development. We used the fish model, Fundulus heteroclitus , to determine if the AHR ligand and pro-oxidant 3,3′,4,4′,5-pentachlorobiphenyl (PCB126) can increase ROS production during killifish development, and to test a novel method for measuring ROS non-invasively in a living organism. The superoxide-sensitive fluorescent dye, dihydroethidium (DHE), was used to detect in ovo ROS production microscopically in developing killifish exposed to PCB126 or vehicle. Both in ovo CYP1A activity (ethoxyresorufin- o -deethylase, EROD) and in ovo ROS were induced by PCB126. In ovo CYP1A activity was inducible by PCB126 concentrations as low as 0.003 nM, with maximal induction occurring at 0.3 nM PCB126. These PCB126 concentrations also significantly increased in ovo ROS production in embryonic liver, ROS being detectable as early as 5 days post-fertilization. These data demonstrate that the pro-oxidant and CYP1A inducer, PCB126, increases both CYP1A activity and ROS production in developing killifish embryos. The superoxide detection assay (SoDA) described in this paper provides a semi-quantitative, easily measured, early indicator of altered ROS production that can be used in conjunction with simultaneous in ovo measurements of CYP1A activity and embryo development to explore functional relationships among biochemical, physiological and developmental responses to AHR ligands.

Aquatic Toxicology↗
USGS2012

Costs of living for juvenile Chinook salmon ( Oncorhynchus tshawytscha ) in an increasingly warming and invaded world

Rapid environmental change in freshwater ecosystems has created a need to understand the interactive effects of multiple stressors, with temperature and invasive predators identified as key threats to imperiled fish species. We tested the separate and interactive effects of water temperature and predation by non-native smallmouth bass ( Micropterus dolomieu ) on the lethal (mortality) and sublethal (behavior, physiology, and growth) effects for juvenile Chinook salmon ( Oncorhynchus tshawytscha ) in seminatural stream channel experiments. Over 48 h trials, there was no difference in direct predation with warmer temperatures, but significant interactive effects on sublethal responses of juvenile salmon. Warmer temperatures resulted in significantly stronger and more variable antipredator responses (surface shoaling and swimming activity), while physiological indicators (plasma glucose, plasma cortisol) suggested suppression of physiological mechanisms in response to the combined stressors. These patterns corresponded with additive negative growth in predation, temperature, and combined treatments. Our results suggest that chronic increases in temperature may not increase direct predation over short periods, but can result in significant sublethal costs with negative implications for long-term development, disease resistance, and subsequent size-selective mortality of Pacific salmon.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2020

Smallmouth buffalo (Ictiobus bubalus) growth across a 1200km human use and ecological disturbance gradient in the Upper Mississippi River System

Smallmouth buffalo (Ictiobus bubalus) is a common and widely distributed large-bodied species of the family Catostomidae. It inhabits large rivers and reservoirs of the eastern continental United States (east of the continental Divide) and is most abundant and common in the large rivers of the Midwest and Central Plains, though it does occur as far north and east as the Hudson Bay drainage and as far south and west as Arizona (Edwards and Twoney 1982). Historically, smallmouth buffalo were an important component of commercial fisheries on both the Mississippi and Illinois Rivers. However, following the introduction of common carp (Cyprinus carpio) in the mid-1800s (Carlander 1954), the construction of a system of navigation dams on Upper Mississippi and Illinois River in the 1930s (USGS 1999), and water quality/pollution issues through the 1980s (Weiner 2010), the role of smallmouth buffalo in the overall UMRS fish community and commercial fishery has generally diminished relative to historical standards. Still, smallmouth buffalo remains an important and valued component of the UMRS commercial fishery. The study area is represented by three study reaches on the Illinois River and three study reaches on the Upper Mississippi River (Figure 1). Collectively, these study reaches represent nearly 1200 river km and exist across strong and pronounced ecological and disturbance gradients. For example, habitat composition, water quality, commercial navigation intensity, aquatic plant prominence, and the number and abundance of nonnative fish species vary strongly across the study domain, with northern Mississippi River reaches exhibiting less navigation traffic, better water quality, markedly greater aquatic plant prominence, more diverse habitat composition, and comparably much smaller numbers of nonnative species than the lower Mississippi River study reach and those on the Illinois River (USGS 1999; Johnson and Hagerty [eds] 2008; Irons et al. 2009). Long term monitoring efforts conducted under the auspices of the Upper Mississippi River Restoration program over the past 27 years have provided tremendous insights into shifts and changes of the overall UMRS fish community (Ickes et al. 2005; Garvey et al. 2010; Schramm and Ickes 2016). However, these monitoring efforts observe only the most basic aspects of the UMRS fish community (i.e., catch, length, weight, distribution, and occurrence). To gain a greater understanding of forces driving community level shifts and changes, more directed study is needed on the functional attributes of fish populations (i.e., growth, mortality, recruitment). Collectively, these functional attributes of populations are termed population dynamics and/or vital rates. It is important to note, the population dynamics of fishes in large rivers is generally poorly understood, especially for non-game species (Ickes 2018). The prevailing view is that abiotic factors largely govern inter-annual population dynamics, typically based upon rather short-term observations and correlations with assorted abiotic river attributes that vary on a seasonal or annual basis (for example, Risotto and Turner 1985). However, the role that longer-term abiotic factors play in regulating population abundance, or that biotic factors internal to the population (e.g., spawner-recruit dynamics, growth dynamics) or external to the population (e.g., predator-prey dynamics, sympatric competitors, disease) remain poorly understood. Achieving a greater understanding of these dynamics is important for stock, game, and invasive species management. In 2017, as part of a larger study designed to gain vital population rate information for smallmouth buffalo in the Upper Mississippi and Illinois Rivers (“Smallmouth Buffalo population demographics of the Upper Mississippi River System”; UMRR LTRM 2018SOW project items 2018MMBF1-2018MMBF6) annual growth patterns in smallmouth buffalo were determined and evaluated. This was accomplished by measuring growth histories recorded in annual growth increments on hard bony parts (here otoliths), a method known generically as biochronology, and somewhat analogous to dendrochronology practiced by foresters. These methods allow one to generate time-series of annual growth histories that depend upon age, year class (i.e., cohort), and annual environmental conditions experienced by the population over time (Weisberg, 1993). Biochronology methods were used to develop a 36-year time series of smallmouth buffalo growth in the Upper Mississippi and Illinois Rivers across a 1200 km ecological and human use disturbance gradient. Annual growth intervals were identified and measured from otoliths to determine fish age and growth history. A mixed model that parses the growth increment into age and year effects was fit to these data. Given the pronounced ecological and disturbance gradients inherent to the UMRS and the study domain, an a priori expectation of differing patterns in growth is accepted as a null hypothesis to test. The goal of this study was to model smallmouth buffalo growth as a function of the age of the fish and the growth year in which the growth was gained. The primary modeling objective was to parse growth observed on each annulus into a portion attributable to the age of the fish and the portion attributable to the year in which the growth was gained. In effect, this modeling approach removes the somewhat trivial age effects on growth so that a non-confounded growth year effect can be gained. Results attributable to growth year provide a time series of growth information that is of the same duration as the oldest fish observed and solely reflects environmental influences on growth. These model responses can then be investigated relative to environmental covariate time-series suspected of influencing growth of smallmouth buffalo in the Upper Mississippi and Illinois Rivers (e.g., temperature, discharge, population density, population mortality, forage availability, sympatric competition, habitat composition, navigation intensity, nonnative fish prominence, etc.). Thus, the primary scientific objective was to investigate if and how smallmouth buffalo growth varies in accordance with innate ecological and disturbance gradients across the study domain.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗
USGS2003

Chemosterilization of male sea lampreys ( Petromyzon marinus ) does not affect sex pheromone release

Release of males sterilized by injection with bisazir is an important experimental technique in management of sea lamprey ( Petromyzon marinus ), an invasive, nuisance species in the Laurentian Great Lakes. Sea lampreys are semelparous and sterilization can theoretically eliminate a male's reproductive capacity and, if the ability to obtain mates is not affected, waste the sex products of females spawning with him. It has been demonstrated that spermiating males release a sex pheromone that attracts ovulating females. We demonstrated that sterilized, spermiating males also released the pheromone and attracted ovulating females. In a two-choice maze, ovulating females increased searching behavior and spent more time in the side of the maze containing chemical stimuli from sterilized, spermiating males. This attraction response was also observed in spawning stream experiments. Also, electro-olfactograms showed that female olfactory organs were equally sensitive to chemical stimuli from sterilized and nonsterilized, spermiating males. Finally, fast atom bombardment mass spectrometry showed that extracts from water conditioned with sterilized and nonsterilized, spermiating males contained the same pheromonal molecule at similar levels. We concluded that injection of bisazir did not affect the efficacy of sex pheromone in sterilized males.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2019

Modeling framework to estimate spawning and hatching locations of pelagically-spawned eggs

Identifying spawning and hatching locations is vital to controlling invasive fish and conserving imperiled fish, which can be difficult for pelagically-spawning species with semi-buoyant eggs. In freshwater systems, this reproductive strategy is common among cyprinid species, such as Chinese carp species currently threatening the Great Lakes. Following the confirmation that one of these species, Grass Carp (Ctenopharyngodon idella), was spawning in a Great Lakes tributary, we developed a modeling framework to combine field data with hydraulic models to calculate the most probable spawning and hatching locations for collected eggs. Our results indicate that the estimated spawning location encompassed habitat consistent with spawning sites in Grass Carp’s native range. Additionally, all eggs were identified to have hatched in the river, increasing the likelihood of successful recruitment. This modeling framework can be used to estimate spawning and hatching locations for Chinese carp species, as well as all pelagic, riverine spawners. Spawning and hatching locations provide key information to researchers about the reproductive requirements of species and to agencies about how best to manage populations for control or restoration.

Canadian Journal of Fisheries and Aquatic Sciences↗