Search USGS⌕ Search

SEARCH · Search USGS

Results for “Structure”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 451 records · Page 25Linked to original sources
USGS2013

Genetic structure of the Common Eider in the western Aleutian Islands prior to fox eradication

Since the late 18 th century bird populations residing in the Aleutian Archipelago have been greatly reduced by introduced arctic foxes ( Alopex lagopus ). We analyzed data from microsatellite, nuclear intron, and mitochondrial (mtDNA) loci to examine the spatial genetic structure, demography, and gene flow among four Aleutian Island populations of the Common Eider ( Somateria mollissima ) much reduced by introduced foxes. In mtDNA, we found high levels of genetic structure within and between island groups (Φ ST = 0.643), but we found no population subdivision in microsatellites or nuclear introns. Differences in genetic structure between the mitochondrial and nuclear genomes are consistent with the Common Eider's breeding and winter biology, as females are highly philopatric and males disperse. Nevertheless, significant differences between islands in the mtDNA of males and marginal significance ( P = 0.07) in the Z -linked locus Smo 1 suggest that males may also have some level of fidelity to island groups. Severe reduction of populations by the fox, coupled with females' high philopatry, may have left the genetic signature of a bottleneck effect, resulting in the high levels of genetic differentiation observed in mtDNA (Φ ST = 0.460–0.807) between islands only 440 km apart. Reestablishment of the Common Eider following the fox's eradication was likely through recruitment from within the islands and bolstered by dispersal from neighboring islands, as suggested by the lack of genetic structure and asymmetry in gene flow between Attu and the other Near Islands.

Aleutian Islands↗
USGS2004

Variation in the population structure of Yukon River chum and coho salmon: Evaluating the potential impact of localized habitat degradation

We used microsatellite and mitochondrial DNA-restriction fragment length polymorphism (mtDNA-RFLP) analyses to test the hypothesis that chum salmon Oncorhynchus keta and coho salmon O. kisutch in the Yukon River, Alaska, exhibit population structure at differing spatial scales. If the hypothesis is true, then the risk of losing genetic diversity because of habitat degradation from a gold mine near a Yukon River tributary could differ between the two species. For each species, collections were made from two tributaries in both the Innoko and Tanana rivers, which are tributaries to the lower and middle Yukon River. The results revealed a large difference in the degree and spatial distribution of population structure between the two species. For chum salmon, the microsatellite loci (F-statistic [FST] = 0.021) and mtDNA (F ST = -0.008) revealed a low degree of interpopulation genetic diversity on a relatively large geographic scale. This large-scale population structure should minimize, although not eliminate, the risk of genetic diversity loss due to localized habitat degradation. For coho salmon, the microsatellites (FST = 0.091) and mtDNA (FST = 0.586) revealed a high degree of interpopulation genetic diversity on a relatively small geographic scale. This small-scale population structure suggests that coho salmon are at a relatively high risk of losing genetic diversity due to lo-calized habitat degradation. Our study underscores the importance of a multispecies approach for evaluating the potential impact of land-use activities on the genetic diversity of Pacific salmon.

Transactions of the American Fisheries Society↗
USGS2005

Winter ice processes and pool habitat associated with two types of constructed instream structures

There is little information on the winter features of salmonid habitats associated with constructed instream structures to provide guidance when planning habitat improvement projects. We assessed winter habitat features for trout of the genera Oncorhynchus and Salvelinus in pools associated with two types of instream structures constructed on a low-gradient reach of a mountain stream in western Wyoming with a mean wetted width of 6.4 m. Pool habitat was affected by temporal variability in ice formations from fall into winter. As surface ice and snow accumulated with the progression of winter, variation in ice formations was less frequent and winter habitat conditions became more stable. However, groundwater inflow that maintained water temperatures at 0.2-0.6??C in a portion of the study reach appeared to contribute to incomplete surface ice cover and variation in ice formations in pools through most of the winter. Hanging dams and anchor ice dams were the primary ice features that affected winter habitat in pools associated with constructed instream structures. Trout were observed in these pools in the fall but tended to abandon pools with variation in ice formations as winter progressed. The potential impacts of groundwater inflow and winter ice processes on trout habitat in pools associated with instream structures should be considered when planning habitat improvement projects. ?? Copyright by the American Fisheries Society 2005.

North American Journal of Fisheries Management↗
USGS2014

Comparative population structure of cavity-nesting sea ducks

A growing collection of mtDNA genetic information from waterfowl species across North America suggests that larger-bodied cavity-nesting species exhibit greater levels of population differentiation than smaller-bodied congeners. Although little is known about nest-cavity availability for these species, one hypothesis to explain differences in population structure is reduced dispersal tendency of larger-bodied cavity-nesting species due to limited abundance of large cavities. To investigate this hypothesis, we examined population structure of three cavity-nesting waterfowl species distributed across much of North America: Barrow's Goldeneye ( Bucephala islandica ), Common Goldeneye ( B. clangula ), and Bufflehead ( B. albeola ). We compared patterns of population structure using both variation in mtDNA control-region sequences and band-recovery data for the same species and geographic regions. Results were highly congruent between data types, showing structured population patterns for Barrow's and Common Goldeneye but not for Bufflehead. Consistent with our prediction, the smallest cavity-nesting species, the Bufflehead, exhibited the lowest level of population differentiation due to increased dispersal and gene flow. Results provide evidence for discrete Old and New World populations of Common Goldeneye and for differentiation of regional groups of both goldeneye species in Alaska, the Pacific Northwest, and the eastern coast of North America. Results presented here will aid management objectives that require an understanding of population delineation and migratory connectivity between breeding and wintering areas. Comparative studies such as this one highlight factors that may drive patterns of genetic diversity and population trends.

The Auk↗
USGS2002

Structure and earthquake offsets on the San Andreas fault at the Wrightwood, California paleoseismic site

Thirty-eight trenches and natural exposures across the San Andreas fault zone, four km northwest of Wrightwood, California, reveal the structure and stratigraphy of this paleoseismic site. A 25-m-thick stratigraphic section of late Holocene peat, debris flows, and fluvial sediments have accumulated syntectonically and are deformed in a complicated flower, or flake, structure within the fault zone. Whereas slip is everywhere parallel to the trend of the San Andreas fault, layering within the fan-shaped section guides the surface faulting, and transtensive portions of the structure are connected to transpressive portions by bedding-parallel detachment faults. The structure has grown through time, widely distributing the evidence for individual earthquakes. The broad zone of deformation and rapid sedimentation permit the characterization of an unusually large number of prehistoric earthquakes. The presence of at least four geomorphically similar sites within 10 km along the fault zone suggests that this kind of site is common and other sites should be exploited.

California↗
USGS2002

Separation of site effects and structural focusing in Santa Monica, California: A study of high-frequency weak motions from earthquakes and blasts recorded during the Los Angeles Region Seismic Experiment

Near-surface site factors and the effects of deep structural focusing were estimated in the Santa Monica Mountains and Santa Monica, California, from a portable array of 75 seismic stations deployed during the Los Angeles Region Seismic Experiment, Phase II (LARSE II). The objective was to examine further the origin of seismic wave amplification in the region of intense damage south of the Santa Monica Fault from the Northridge earthquake. The analysis used normalized spectral amplitudes in the 4- to 8- and 8- to 12-Hz range in direct and coda waves from local earthquakes in Santa Paula, Northridge, Redlands, and Hector Mine. Coda waves indicated that site factor amplifications are larger south of the Santa Monica fault relative to the north. Spectral ratios of direct S waves, corrected for site effects, show additional amplificaton south of, and adjacent to, the Santa Monica fault, attributable to focusing by a deeper structure. Gao et al. (1996) concluded that localized focusing effects contributed to anomalous P- and S-wave amplification in the Santa Monica damage zone for Northridge aftershocks within a specified range of azimuths. In an attempt to reproduce the hypothesized focusing from the Northridge earthquake, two shots (4000 and 3750 lb.) were detonated, one at Pyramid Lake, a distance of about 69 km to the north-northwest of central Santa Monica, and the other near Fort Tejon, a distance of 91 km. The azimuth of the shots was chosen to be that expected to give anomalous amplification. At these distance steeply incident seismic energy from Pg/PmP waves are expected to pass through the underground focusing structure and be selectively amplified. After the local site factors are removed, the waveforms from the Fort Tejon shot exhibited localized amplification adjacent to and south of the fault, 2-3 times larger than that of the surrounding area. The effect is less for waves from the Pyramid Lake shot, which could be due to their higher angle of incidence. The observations lend support to the argument that deep structural focusing is an important factor in determining azimuth-dependent amplification of seismic waves along a basin edge.

California↗
USGS2026

New constraints on northeast Seattle basin structure from converted seismic waves

The Seattle basin is a deep sedimentary basin in the Seattle–Bellevue, Washington metropolitan area within the Puget Lowland of Washington State. We determine the structure of a portion of the basin and the underlying basement using analysis of P waves converted from direct S incident from below. A deep local crustal event beneath Monroe, about 35 km northeast of Seattle, was recorded by a 100‐station nodal array deployed in 2019. The event produced a variety of coherent seismic phases, including converted waves from the sediment—basement boundary, internal structure within the basin, and additional crustal discontinuities. Using observed Sp converted waves, we apply an adjoint‐based full waveform inversion (FWI) method to determine the amplitude and extent of seismic discontinuities at depth. We find the strongest source of converted waves for this event lies ∼6 to 7 km depth below northern Lake Washington, interpreted to be the local depth to basement rock. The newly imaged shallow basement structure may be part of a deformation zone associated with the Siletzia eastern boundary. Our results highlight the utility of converted seismic waves recorded by a dense array, combined with an FWI method, to illuminate crustal structure.

Washington↗
USGS1997

Seismic interpretation of the deep structure of the Wabash Valley Fault System

Interpretations of newly available seismic reflection profiles near the center of the Illinois Basin indicate that the Wabash Valley Fault System is rooted in a series of basement-penetrating faults. The fault system is composed predominantly of north-northeast-trending high-angle normal faults. The largest faults in the system bound the 22-km wide 40-km long Grayville Graben. Structure contour maps drawn on the base of the Mount Simon Sandstone (Cambrian System) and a deeper pre-Mount Simon horizon show dip-slip displacements totaling at least 600 meters across the New Harmony fault. In contrast to previous interpretations, the N-S extent of significant fault offsets is restricted to a region north of 38° latitude and south of 38.35° latitude. This suggests that the graben is not a NE extension of the structural complex composed of the Rough Creek Fault System and the Reelfoot Rift as previously interpreted. Structural complexity on the graben floor also decreases to the south. Structural trends north of 38° latitude are offset laterally across several large faults, indicating strike-slip motions of 2 to 4 km. Some of the major faults are interpreted to penetrate to depths of 7 km or more. Correlation of these faults with steep potential field gradients suggests that the fault positions are controlled by major lithologic contacts within the basement and that the faults may extend into the depth range where earthquakes are generated, revealing a potential link between specific faults and recently observed low-level seismicity in the area.

Illinois, Indiana, Kentucky↗
USGS2020

The ODD protocol for describing agent-based and other simulation models: A second update to improve clarity, replication, and structural realism

The Overview, Design concepts and Details (ODD) protocol for describing Individual- and Agent-Based Models (ABMs) is now widely accepted and used to document such models in journal articles. As a standardized document for providing a consistent, logical and readable account of the structure and dynamics of ABMs, some research groups also find it useful as a workflow for model design. Even so, there are still limitations to ODD that obstruct its more widespread adoption. Such limitations are discussed and addressed in this paper: the limited availability of guidance on how to use ODD; the length of ODD documents; limitations of ODD for highly complex models; lack of sufficient details of many ODDs to enable reimplementation without access to the model code; and the lack of provision for sections in the document structure covering model design rationale, the model’s underlying narrative, and the means by which the model’s fitness for purpose is evaluated. We document the steps we have taken to provide better guidance on: structuring complex ODDs and an ODD summary for inclusion in a journal article (with full details in supplementary material; Table 1); using ODD to point readers to relevant sections of the model code; update the document structure to include sections on model rationale and evaluation. We also further advocate the need for standard descriptions of simulation experiments and argue that ODD can in principle be used for any type of simulation model. Thereby ODD would provide a lingua franca for simulation modelling.

Journal of Artificial Societies and Social Simulat↗
USGS2012

Estimating survival rates with time series of standing age‐structure data

It has long been recognized that age‐structure data contain useful information for assessing the status and dynamics of wildlife populations. For example, age‐specific survival rates can be estimated with just a single sample from the age distribution of a stable, stationary population. For a population that is not stable, age‐specific survival rates can be estimated using techniques such as inverse methods that combine time series of age‐structure data with other demographic data. However, estimation of survival rates using these methods typically requires numerical optimization, a relatively long time series of data, and smoothing or other constraints to provide useful estimates. We developed general models for possibly unstable populations that combine time series of age‐structure data with other demographic data to provide explicit maximum likelihood estimators of age‐specific survival rates with as few as two years of data. As an example, we applied these methods to estimate survival rates for female bison ( Bison bison ) in Yellowstone National Park, USA. This approach provides a simple tool for monitoring survival rates based on age‐structure data.

Ecology↗
USGS2014

Forest stand structure, productivity, and age mediate climatic effects on aspen decline

Because forest stand structure, age, and productivity can mediate the impacts of climate on quaking aspen ( Populus tremuloides ) mortality, ignoring stand-scale factors limits inference on the drivers of recent sudden aspen decline. Using the proportion of aspen trees that were dead as an index of recent mortality at 841 forest inventory plots, we examined the relationship of this mortality index to forest structure and climate in the Rocky Mountains and Intermountain Western United States. We found that forest structure explained most of the patterns in mortality indices, but that variation in growing-season vapor pressure deficit and winter precipitation over the last 20 years was important. Mortality index sensitivity to precipitation was highest in forests where aspen exhibited high densities, relative basal areas, quadratic mean diameters, and productivities, whereas sensitivity to vapor pressure deficit was highest in young forest stands. These results indicate that the effects of drought on mortality may be mediated by forest stand development, competition with encroaching conifers, and physiological vulnerabilities of large trees to drought. By examining mortality index responses to both forest structure and climate, we show that forest succession cannot be ignored in studies attempting to understand the causes and consequences of sudden aspen decline.

Ecology↗
USGS2011

Metacommunity theory as a multispecies, multiscale framework for studying the influence of river network structure on riverine communities and ecosystems

Explaining the mechanisms underlying patterns of species diversity and composition in riverine networks is challenging. Historically, community ecologists have conceived of communities as largely isolated entities and have focused on local environmental factors and interspecific interactions as the major forces determining species composition. However, stream ecologists have long embraced a multiscale approach to studying riverine ecosystems and have studied both local factors and larger-scale regional factors, such as dispersal and disturbance. River networks exhibit a dendritic spatial structure that can constrain aquatic organisms when their dispersal is influenced by or confined to the river network. We contend that the principles of metacommunity theory would help stream ecologists to understand how the complex spatial structure of river networks mediates the relative influences of local and regional control on species composition. From a basic ecological perspective, the concept is attractive because new evidence suggests that the importance of regional processes (dispersal) depends on spatial structure of habitat and on connection to the regional species pool. The role of local factors relative to regional factors will vary with spatial position in a river network. From an applied perspective, the long-standing view in ecology that local community composition is an indicator of habitat quality may not be uniformly applicable across a river network, but the strength of such bioassessment approaches probably will depend on spatial position in the network. The principles of metacommunity theory are broadly applicable across taxa and systems but seem of particular consequence to stream ecology given the unique spatial structure of riverine systems. By explicitly embracing processes at multiple spatial scales, metacommunity theory provides a foundation on which to build a richer understanding of stream communities.

Journal of the North American Benthological Societ↗
USGS2011

Structural controls and evolution of gold-, silver-, and REE-bearing copper-cobalt ore deposits, Blackbird district, east-central Idaho: Epigenetic origins

The Cu-Co ± Au (± Ag ± Ni ± REE) ore deposits of the Blackbird district, east-central Idaho, have previously been classified as Besshi-type VMS, sedex, and IOCG deposits within an intact stratigraphic section. New studies indicate that, across the district, mineralization was introduced into the country rocks as a series of structurally controlled vein and alteration systems. Quartz-rich and biotite-rich veins (and alteration zones) and minor albite and siderite veinlets maintain consistent order and sulfide mineral associations across the district. Both early and late quartz veins contain chalcopyrite and pyrite, whereas intermediate-stage tourmaline-biotite veins host the cobaltite. Barren early and late albite and late carbonate (generally siderite) form veins or are included in the quartz veins. REE minerals, principally monazite, allanite, and xenotime, are associated with both tourmaline-biotite and late quartz veins. The veins are in mineralized intervals along axial planar cleavage, intrafolial foliation, and shears. Mineralized intervals are hosted by a variety of metasedimentary rocks, including three phyllitic units of Mesoproterozoic age and two schistose units. All of these units are S-tectonites in the footwall of a regional thrust fault. Specifically, the district lies within an oblique thrust ramp containing a series of structural horses (three domains) in a duplex system. The deposits span the three domains and are hosted by metamorphic rocks that range from lower amphibolite facies in the structurally upper domain to lower-middle greenschist facies in the lower domain (an inverted metamorphic sequence). Early quartz and biotite veins were introduced during progressive folding and prolonged peak metamorphic conditions and they underwent late-tectonic retrograde recrystallization and metamorphic mineral growth, to the same extent as the country rocks in each domain. Where little subsequent deformation occurred, early veins are discordant to bedding but, where folding was polyphase and fabrics are penetrative, mineralized zones are concordant with metamorphic compositional layering. Late quartz veins in the zones are associated with retrograde minerals and textures and are only locally deformed. 40 Ar/ 39 Ar dating of unoriented muscovite from the selvage of a late quartz vein yields a Late Cretaceous age of about 83 Ma, the time of retrograde metamorphism associated with introduction of late quartz veins. Textural data at all scales indicate that the host sites for veins and the tectonic evolution of both host rocks and mineral deposits were kinematically linked to Late Cretaceous regional thrust faulting. Heat, fluids, and conduits for generation and circulation of fluids were part of the regional crustal thickening. The faulting also juxtaposed metaevaporite layers in the Mesoproterozoic Yellowjacket Formation over Blackbird district host rocks. We conclude that this facilitated chemical exchange between juxtaposed units resulting in leaching of critical elements (Cl, K, B, Na) from metaevaporites to produce brines, scavenging of metals (Co, Cu, etc) from rocks in the region, and, finally, concentrating metals in the lower-plate ramp structures. Although the ultimate source of the metals remains undetermined, the present Cu-Co ± Au (± Ag ± Ni ± REE) Blackbird ore deposits formed during Late Cretaceous compressional deformation .

Idaho↗
USGS1971

Models of mineralized solution-collapse structures from drilling statistics: An aid to exploration

Variations in thickness and metal content of selected stratigraphic units cut by drill holes in the East Tennessee zinc districts have been analyzed by regression techniques. Such analysis demonstrated that as the thickness of an underlying limestone unit is decreased chiefly by solution thinning, overlying fine-grained dolomite units increase in thickness by collapse dilation. Variation in metal content is closely associated with this inverse thickness relationship because of the deposition of the ore minerals in the dilation openings. Most of the ore is found where the fine-grained dolomite units were so dilated by collapse as to form a series of rubble to crackle breccias. Hypothetical cross sections synthesized from widely spaced drill-hole data show mineralized structures of a size, shape, and distribution of metal comparable to those diagrammed in the literature from actual field relations. From these composite models of hypothetical structures the relative position of a particular hole can be approximated within its own structure. The exploration geologist thus has a numerical aid for estimating the amounts of offset needed to penetrate the most favorable part of the mineralized collapse structure with second-stage drill holes.

Economic Geology↗
USGS2007

Community structure of foraminiferal communities within temporal biozones from the western Arctic Ocean

Community structure is often an overlooked dimension of biodiversity. Knowledge of community structure, the statistical distribution of the relative species abundance vector, makes possible comparisons and contrasts across time, space, and/or environmental conditions. Our results indicate that species of Arctic foraminifera in age-correlated cores from abyssal depths are each best described by log-series distributions. Using this structural information, we were able to determine that structural stability exists for at least 50 ka. The foraminiferal communities in this study show remarkable concordance, distributional similarity and support the neutral theory of biodiversity.

Journal of Foraminiferal Research↗
USGS2010

Structural equation modeling for observational studies

Structural equation modeling (SEM) represents a framework for developing and evaluating complex hypotheses about systems. This method of data analysis differs from conventional univariate and multivariate approaches familiar to most biologists in several ways. First, SEMs are multiequational and capable of representing a wide array of complex hypotheses about how system components interrelate. Second, models are typically developed based on theoretical knowledge and designed to represent competing hypotheses about the processes responsible for data structure. Third, SEM is conceptually based on the analysis of covariance relations. Most commonly, solutions are obtained using maximum-likelihood solution procedures, although a variety of solution procedures are used, including Bayesian estimation. Numerous extensions give SEM a very high degree of flexibility in dealing with nonnormal data, categorical responses, latent variables, hierarchical structure, multigroup comparisons, nonlinearities, and other complicating factors. Structural equation modeling allows researchers to address a variety of questions about systems, such as how different processes work in concert, how the influences of perturbations cascade through systems, and about the relative importance of different influences. I present 2 example applications of SEM, one involving interactions among lynx (Lynx pardinus), mongooses (Herpestes ichneumon), and rabbits (Oryctolagus cuniculus), and the second involving anuran species richness. Many wildlife ecologists may find SEM useful for understanding how populations function within their environments. Along with the capability of the methodology comes a need for care in the proper application of SEM.

Journal of Wildlife Management↗
USGS1998

Estimating survival rates with age-structure data

We developed a general statistical model that provides a comprehensive framework for inference about survival rates based on standing age-structure and ages-at-death data. Previously available estimators are maximum likelihood under the general model, but they use only 1 type of data and require the assumption of a stable age structure and a known population growth rate. We used the general model to derive new survival rate estimators that use both types of data and require only the assumption of a stable age structure or a known population growth rate. Our likelihood-based approach allows use of standard model-selection procedures to test hypotheses about age-structure stability, population growth rates, and age-related patterns in survival. We used this approach to estimate survival rates for female sea otters ( Enhydra lutris ) in Prince William Sound, Alaska.

Journal of Wildlife Management↗
USGS2016

The influence of food abundance, food dispersion and habitat structure on territory selection and size of an Afrotropical terrestrial insectivore

Most tropical insectivorous birds, unlike their temperate counterparts, hold and defend a feeding and breeding territory year-around. However, our understanding of ecological factors influencing territory selection and size in tropical insectivores is limited. Here we examine three prominent hypotheses relating food abundance, food dispersion (spatial arrangement of food items), and habitat structure to territoriality in the Usambara Thrush Turdus roehli . We first compared leaf-litter macro-invertebrate abundance and dispersion, and habitat structure between territories and random sites. We then examined the relation between these same ecological factors and territory size. Invertebrate abundance and dispersion were sparsely and evenly distributed across our study system and did not vary between territories and random sites. In contrast, habitat structure did vary between territories and random sites indicating the Usambara Thrush selects territories with open understorey and closed overstorey habitat. Invertebrate abundance and dispersion within territories of the Usambara Thrush were not associated with habitat structure. We believe the most likely explanation for the Usambara Thrush’s preference for open understorey and closed overstorey habitat relates to foraging behavior. Using information-theoretic model selection we found that invertebrate abundance was the highest-ranked predictor of territory size and was inversely related, consistent with food value theory of territoriality.

Ostrich↗