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USGS2015

Characterizing and simulating sediment loads and transport in the lower part of the San Antonio River Basin

This extended abstract is based on the U.S. Geological Survey Scientific Investigations Reports by Crow et al. (2013) and Banta and Ockerman (2014). Suspended sediment in rivers and streams can play an important role in ecological health of rivers and estuaries and consequently is an important issue for water-resource managers. The quantity and type of suspended sediment can affect the biological communities (Wood and Armitage, 1997), the concentration and movement of natural constituents and anthropogenic contaminants (Moran and others, 2012), and the amount of sediment deposition in coastal environments (Milliman and Meade, 1983). To better understand suspended-sediment characteristics in the San Antonio River Basin, the U.S. Geological Survey (USGS), in cooperation with the San Antonio River Authority and Texas Water Development Board, conducted a two-phase study to (1) collect and analyze sediment data to characterize sediment conditions in the San Antonio River downstream of San Antonio, Texas, and (2) develop and calibrate a watershed model to simulate hydrologic conditions and suspended-sediment loads for four watersheds in the San Antonio River Basin, downstream from San Antonio, Texas.

Texas↗

USGS2024

Environmental variation structures reproduction and recruitment in long-lived mega-herbivores: Galapagos giant tortoises

Migratory, long-lived animals are an important focus for life-history theory because they manifest extreme trade-offs in life-history traits: delayed maturity, low fecundity, variable recruitment rates, long generation times, and vital rates that respond to variation across environments. Galapagos tortoises are an iconic example: they are long-lived, migrate seasonally, face multiple anthropogenic threats, and have cryptic early life-history stages for which vital rates are unknown. From 2012 to 2021, we studied the reproductive ecology of two species of Galapagos tortoises ( Chelonoidis porteri and C. donfaustoi ) along elevation gradients that coincided with substantial changes in climate and vegetation productivity. Specifically, we (1) measured the body and reproductive condition of 166 adult females, (2) tracked the movements of 33 adult females using global positioning system telemetry, and monitored their body condition seasonally, (3) recorded nest temperatures, clutch characteristics, and egg survival from 107 nests, and (4) used radiotelemetry to monitor growth, survival, and movements of 104 hatchlings. We also monitored temperature and rainfall from field sites, and remotely sensed primary productivity along the elevation gradient. Our study showed that environmental variability, mediated by elevation, influenced vital rates of giant tortoises, specifically egg production by adult females and juvenile recruitment. Adult females were either elevational migrants or year-round lowland residents. Migrants had higher body condition than residents, and body condition was positively correlated with the probability of being gravid. Nests occurred in the hottest, driest parts of the tortoise's range, between 6 and 165 m elevation. Clutch size increased with elevation, whereas egg survival decreased. Hatchling survival and growth were highest at intermediate elevations. Hatchlings dispersed rapidly to 100–750 m from their nests before becoming sedentary (ranging over <0.2 ha). Predicted future climates may impact the relationships between elevation and vital rates of Galapagos tortoises and other species living across elevation gradients. Resilience will be maximized by ensuring the connectivity of foraging and reproductive areas within the current and possible future elevational ranges of these species.

Galapagos Islands, Santa Cruz Island↗

USGS2008

Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish movements and abundances in rivers. One underlying assumption is that the monitoring program is designed in perpetuity, and consequently our capability to detect trends substantially increases with time. The protocol describes sampling designs, methods, training procedures, safety considerations, data management, data analysis, and reporting. The allocation of sampling effort represents a balance between ecological considerations, a sound monitoring approach, and practical limitations caused by logistical constraints and a limited annual budget of $55,000. The widespread declines of native fish species in western North America highlights the importance and urgency of understanding trends in fish assemblages from undisturbed habitats. Seasonal and annual trends in fish assemblages will provide insights at the individual, population, and assemblage level. This protocol will allow managers to detect increases and decreases in abundance of priority management species, and occurrence of non-native, hatchery, and federally listed fish. The detection of trends in fish assemblages will allow for specific management actions that may include: implementation of more appropriate fishing regulations, evaluation of existing hatchery releases, control of non-native fish species, and prioritization of habitat restoration projects. Dissemination and communication of scientific findings on North Coast and Cascades Network fish assemblages will be a core product of this protocol, which will have much relevance to decision makers, park visitors, researchers, and educators.

Techniques and Methods↗

USGS2022

A statistical framework for modelling migration corridors

1. Management of animal populations requires spatially explicit knowledge of movement corridors, such as those used during seasonal migrations. GPS tracking data allows for mapping of corridors from directly observed movements, providing important insights, but tracking data is absent for many populations. 2. We developed a novel statistical corridor modeling approach that predicts movement corridors from cost-distance movement models fit directly to migration tracking data. Unlike existing predictive approaches, this does not require the ad-hoc transformation of habitat suitability surfaces into resistance surfaces. We tested the ability of the approach to recover parameters used to generate simulated movements. We then used GPS data from three migrating mule deer (Odocoileus hemionus) herds in Idaho and Wyoming to model corridors as a function of elevation, slope, aspect, percent shrub, date of peak green-up, snow-off date, and human footprint. We assessed the predictive ability of the fitted models using validation tracks from the same herd as well as from the other herds. 3. The approach reproduced parameters used to generate the simulated movements, predicted the corridors used by migratory populations, and described the direction, magnitude, and confidence levels of the effects of environmental variables on corridors. The effects environmental variables had on corridors differed depending on the herd. Within-herd validation indicated that fitted corridor models are more accurate at predicting migration corridors than null models, and cross-herd validation indicated that fitted models for some herds accurately predicted the observed migrations of other herds. 4. In addition to the practical benefit of mapping corridors for management, our statistical corridor modeling framework sets the stage for evaluating fundamental questions about the fitness tradeoffs, navigation, learning, fidelity, and movement constraints that influence migratory and other corridor-generating behavior. Models of predictive corridors can inform management and planning for the conservation of migrations across taxa, including the potential restoration of corridors. Our corridor modeling approach is also readily applied to non-migratory animal movements.

Idaho, Wyoming↗

USGS2019

Confluences function as ecological hotspots: Geomorphic and regional drivers can help identify patterns of fish distribution within a seascape

Quantifying heterogeneity in animal distributions through space and time is a precursor to addressing many important research and management issues. Obtaining these distributional data is especially difficult for mobile organisms that use broader geographic extents. Here, we asked if the merger between 2 research directions—(1) quantifying spatial linkages between fish and geomorphic features (e.g. confluences) and (2) analyzing larger-scale, multi-metric organismal patterns—can provide a broader geographic context for ecological issues that depend on understanding dynamic fish distribution. To address these objectives, we collected data from 59 tagged striped bass Morone saxatilis that were detected by a 26 acoustic receiver array deployed within Plum Island Estuary, MA, USA. We examined these telemetry data using generalized linear mixed models and chi-squared, cluster, and network analyses. Geomorphic site types informed the estuary-wide distribution of striped bass in that tagged fish spent the most time at confluence junctions; however, they did not spend the same amount of time at all junctions. Relative to integrating multiple metrics, number of tagged fish, residence time, and number of movements were not the same across all receivers. When all 3 metrics were considered together, 4 distinct clusters of distributional patterns emerged. Network analyses connected geomorphology and multi-metric seascape patterns. Confluence junctions in the Rowley and Middle regions were the most connected (high centrality) and most used sites (high residence time). Although confluence junctions function as ecological hotspots, researchers and managers will benefit from interpreting geomorphology within a larger geographic context.

Massachusetts↗

USGS2015

The influence of disturbed habitat on the spatial ecology of Argentine black and white tegu ( Tupinambis merianae ), a recent invader in the Everglades ecosystem (Florida, USA)

The threat of invasive species is often intensified in disturbed habitat. To optimize control programs, it is necessary to understand how degraded habitat influences the behavior of invasive species. We conducted a radio telemetry study to characterize movement and habitat use of introduced male Argentine black and white tegus ( Tupinambis merianae ) in the Everglades of southern Florida from May to August 2012 at the core and periphery of the introduced range. Tegus at the periphery moved farther per day (mean 131.7 ± 11.6 m, n = 6) compared to tegus at the core (mean 50.3 ± 12.4 m, n = 6). However, activity ranges were not significantly smaller in the core (mean 19.4 ± 8.4 ha, n = 6) compared to periphery (mean 29.1 ± 5.2 ha, n = 6). Peripheral activity ranges were more linear due to activity being largely restricted to levee habitat surrounded by open water or marsh. Tegus were located in shrub or tree habitat (mean 96%) more often than expected based on random locations (mean 58%), and the percent cover of trees and shrubs was higher in activity ranges (mean 61%) than the general study area (17%). Our study highlighted the ability of tegus to spread across the Florida landscape, especially in linear disturbed habitats where increased movement occurred and in areas of altered hydrology where movement is not restricted by water.

Florida↗

USGS2024

A test of the frost wave hypothesis in a temperate ungulate

Growing evidence supports the hypothesis that temperate herbivores surf the green wave of emerging plants during spring migration. Despite the importance of autumn migration, few studies have conceptualized resource tracking of temperate herbivores during this critical season. We adapted the frost wave hypothesis (FWH), which posits that animals pace their autumn migration to reduce exposure to snow but increase acquisition of forage. We tested the FWH in a population of mule deer in Wyoming, USA by tracking the autumn migrations of n = 163 mule deer that moved 15–288 km from summer to winter range. Migrating deer experienced similar amounts of snow but 1.4–2.1 times more residual forage than if they had naïve knowledge of when or how fast to migrate. Importantly, deer balanced exposure to snow and forage in a spatial manner. At the fine scale, deer avoided snow near their mountainous summer ranges and became more risk prone to snow near winter range. Aligning with their higher tolerance of snow and lingering behavior to acquire residual forage, deer increased stopover use by 1 ± 1 day (95% CI) day for every 10% of their migration completed. Our findings support the prediction that mule deer pace their autumn migration with the onset of snow and residual forage, but refine the FWH to include movement behavior en route that is spatially dynamic.

Wyoming↗

USGS2019

Estimating density and detection of bobcats in fragmented Midwestern landscapes using spatial capture-recapture data from camera traps

Camera-trapping data analyzed with spatially explicit capture–recapture (SCR) models can provide a rigorous method for estimating density of small populations of elusive carnivore species. We sought to develop and evaluate the efficacy of SCR models for estimating density of a presumed low-density bobcat ( Lynx rufus ) population in fragmented landscapes of west-central Illinois, USA. We analyzed camera-trapping data from 49 camera stations in a 1,458-km 2 area deployed over a 77-day period from 1 February to 18 April 2017. Mean operational time of cameras was 52 days (range = 32–67 days). We captured 23 uniquely identifiable bobcats 113 times and recaptured these same individuals 90 times; 15 of 23 (65.2%) individuals were recaptured at ≥2 camera traps. Total number of bobcat capture events was 139, of which 26 (18.7%) were discarded from analyses because of poor image quality or capture of only a part of an animal in photographs. Of 113 capture events used in analyses, 106 (93.8%) and 7 (6.2%) were classified as positive and tentative identifications, respectively; agreement on tentative identifications of bobcats was high (71.4%) among 3 observers. We photographed bobcats at 36 of 49 (73.5%) camera stations, of which 34 stations were used in analyses. We estimated bobcat density at 1.40 individuals (range = 1.00–2.02)/100 km 2 . Our modeled bobcat density estimates are considerably below previously reported densities (30.5 individuals/100 km 2 ) within the state, and among the lowest yet recorded for the species. Nevertheless, use of remote cameras and SCR models was a viable technique for reliably estimating bobcat density across west-central Illinois. Our research establishes ecological benchmarks for understanding potential effects of colonization, habitat fragmentation, and exploitation on future assessments of bobcat density using standardized methodologies that can be compared directly over time. Further application of SCR models that quantify specific costs of animal movements (i.e., least-cost path models) while accounting for landscape connectivity has great utility and relevance for conservation and management of bobcat populations across fragmented Midwestern landscapes.

Illinois↗

USGS2021

International importance of Percids: Summary and looking forward

Research presented in the preceding chapters emphasizes recent advancements in the research, management, and aquaculture of Walleye, Sauger, and Yellow Perch in North America. These percid fishes, along with the European Perch and Pikeperch, are economically and ecologically important fishes in their native geographic range. Advances in techniques to evaluate current habitat and predict future habitat conditions provide managers with detailed baseline information and biophysical models useful for evaluating adaptive management practices. Current habitat use and movement assessments have improved substantially with technological advancements in acoustic tags and extensive receiver array networks, which, combined with genetic and genomic tools, are improving percid stock assessments and management. Advances in percid aquaculture techniques have improved growth, survival, and disease resistance, enhancing percid stocking efforts and the production of marketable fish. The exchange of information between researchers and managers will continue to advance techniques of percid management for commercial and recreational exploitation and improve aquaculture practices to provide a lucrative commercial aquaculture industry.

Book chapter↗

USGS2007

Landscape heterogeneity shapes predation in a newly restored predator-prey system

Because some native ungulates have lived without top predators for generations, it has been uncertain whether runaway predation would occur when predators are newly restored to these systems. We show that landscape features and vegetation, which influence predator detection and capture of prey, shape large-scale patterns of predation in a newly restored predator-prey system. We analysed the spatial distribution of wolf (Canis lupus) predation on elk (Cervus elaphus) on the Northern Range of Yellowstone National Park over 10 consecutive winters. The influence of wolf distribution on kill sites diminished over the course of this study, a result that was likely caused by territorial constraints on wolf distribution. In contrast, landscape factors strongly influenced kill sites, creating distinct hunting grounds and prey refugia. Elk in this newly restored predator-prey system should be able to mediate their risk of predation by movement and habitat selection across a heterogeneous risk landscape. ?? 2007 Blackwell Publishing Ltd/CNRS.

Ecology Letters↗

USGS2003

Diel distribution of age-0 largemouth bass, Micropterus salmoides, in B. E. Jordan Lake, North Carolina (USA) and its relation to cover

We used prepositioned area electrofishers (PAEs, 10×1.5 m) to assess diel differences in distribution of age-0 largemouth bass, Micropterus salmoides , in August 1992–1993 in a paired sampling design. PAEs were placed parallel to shore in an embayment of an unvegetated reservoir (B. E. Jordan Lake, North Carolina, USA). The catch per unit effort (CPUE=fish/PAE) was significantly higher at night than during the day in both years, indicating that age-0 largemouth bass exhibit nocturnal inshore movements. Age-0 largemouth bass captured inshore during day were smaller than those captured at night, indicating that movement patterns may change ontogenetically. Inshore-offshore movements of age-0 largemouth bass were significantly reduced in the presence of cover, suggesting that diel movements were influenced by specific habitat components. Diel movements likely were related to foraging, resting and predator avoidance behavior and could affect population dynamics and introduce bias in assessment programs.

North Carolina↗

USGS2019

Emperor geese (Anser canagicus) are exposed to a diversity of influenza A viruses, are infected during the non-breeding period and contribute to intercontinental viral dispersal

Emperor geese ( Anser canagicus ) are endemic to coastal areas within Beringia and have previously been found to have antibodies to or to be infected with influenza A viruses (IAVs) in Alaska. In this study, we use virological, serological and tracking data to further elucidate the role of emperor geese in the ecology of IAVs in Beringia during the non‐breeding period. Specifically, we assess evidence for: (a) active IAV infection during spring staging, autumn staging and wintering periods; (b) infection with novel Eurasian‐origin or interhemispheric reassortant viruses; (c) contemporary movement of geese between East Asia and North America; (d) previous exposure to viruses of 14 haemagglutinin subtypes, including Eurasian lineage highly pathogenic (HP) H5 IAVs; and (e) subtype‐specific antibody seroconversion and seroreversion. Emperor geese were found to shed IAVs, including interhemispheric reassortant viruses, throughout the non‐breeding period; migrate between Alaska and the Russian Far East prior to and following remigial moult; have antibodies reactive to a diversity of IAVs including, in a few instances, Eurasian lineage HP H5 IAVs; and exhibit relatively broad and stable patterns of population immunity among breeding females. Results of this study suggest that emperor geese may play an important role in the maintenance and dispersal of IAVs within Beringia during the non‐breeding period and provide information that may be used to further optimize surveillance activities focused on the early detection of Eurasian‐origin IAVs in North America.

Alaska↗

USGS2009

Hydrogeologic Framework, Groundwater Movement, and Water Budget in Tributary Subbasins and Vicinity, Lower Skagit River Basin, Skagit and Snohomish Counties, Washington

A study to characterize the groundwater-flow system in four tributary subbasins and vicinity of the lower Skagit River basin was conducted by the U.S. Geological Survey to assist Skagit County and the Washington State Department of Ecology in evaluating the effects of potential groundwater withdrawals and consumptive use on tributary streamflows. This report presents information used to characterize the groundwater and surface-water flow system in the subbasins, and includes descriptions of the geology and hydrogeologic framework of the subbasins; groundwater recharge and discharge; groundwater levels and flow directions; seasonal groundwater-level fluctuations; interactions between aquifers and the surface-water system; and a water budget for the subbasins. The study area covers about 247 mi2 along the Skagit River and its tributary subbasins (East Fork Nookachamps Creek, Nookachamps Creek, Carpenter Creek, and Fisher Creek) in southwestern Skagit County and northwestern Snohomish County, Washington. The geology of the area records a complex history of accretion along the continental margin, mountain building, deposition of terrestrial and marine sediments, igneous intrusion, and the repeated advance and retreat of continental glaciers. A simplified surficial geologic map was developed from previous mapping in the area, and geologic units were grouped into nine hydrogeologic units consisting of aquifers and confining units. A surficial hydrogeologic unit map was constructed and, with lithologic information from 296 drillers'logs, was used to produce unit extent and thickness maps and four hydrogeologic sections. Groundwater in unconsolidated aquifers generally flows towards the northwest and west in the direction of the Skagit River and Puget Sound. This generalized flow pattern is likely complicated by the presence of low-permeability confining units that separate discontinuous bodies of aquifer material and act as local groundwater-flow barriers. Groundwater-flow directions in the sedimentary aquifer likely reflect local topographic relief (radial flow from bedrock highs) and more regional westward flow from the mountains to the Puget Sound. The largest groundwater-level fluctuations observed during the monitoring period (October 2006 through September 2008) occurred in wells completed in the sedimentary aquifer, and ranged from about 3 to 27 feet. Water levels in wells completed in unconsolidated hydrogeologic units exhibited seasonal variations ranging from less than 1 to about 10 feet. Synoptic streamflow measurements made in August 2007 and June 2008 indicate a total groundwater discharge to creeks in the tributary subbasin area of about 13.15 and 129.6 cubic feet per second (9,520 and 93,830 acre-feet per year), respectively. Streamflow measurements illustrate a general pattern in which the upper reaches of creeks in the study area tended to gain flow from the groundwater system, and lower creek reaches tended to lose water. Large inflows from tributaries to major creeks in the study area suggest the presence of groundwater discharge from upland areas underlain by bedrock. The groundwater system within the subbasins received an average (September 1, 2006 to August 31, 2008) of about 92,400 acre-feet or about 18 inches of recharge from precipitation a year. Most of this recharge (65 percent) discharges to creeks, and only about 3 percent is withdrawn from wells. The remaining groundwater recharge (32 percent) leaves the subbasin groundwater system as discharge to the Skagit River and Puget Sound.

Scientific Investigations Report↗

USGS2004

Movement behavior, dispersal, and the potential for localized management of deer in a suburban environment

We examined the potential for localized management of white-tailed deer ( Odocoileus virginianus ) to be successful by measuring movements, testing site fidelity, and modeling the effects of dispersal. Fifty-nine females were radiomarked and tracked during 1997 through 2000 in Irondequoit, New York, USA, a suburb of Rochester. We constructed home ranges for those deer with A greater than or equal to 18 reclocations/season. Fifty percent minimum convex polygons (MCP) averaged 3.9 (SE = 0.53) ha in the summer and 5.3 (SE = 0.80) ha in the winter. Deer showed strong fidelity to both summer and winter home ranges, and 30 of 31 females showed overlap of summer and winter home ranges. Annual survival was 64%; the major cause of mortality was deer-automobile collisions. Average annual dispersal rates were <15% for yearlings and adults. Using matrix population modeling, we explored the role of female dispersal in sustaining different management objectives in adjacent locales of approximately 1,000 ha. Modeling showed that if female dispersal was 8%, culling would have to reduce annual survival to 58% to maintain a population just under ecological carrying capacity and reduce survival to 42% to keel) the population at one-half carrying capacity. With the same dispersal, contraception Would need to be effective in 32% of females if the population is near carrying capacity and 68% if the population is at one-half of carrying capacity. Movement behavior data and modeling results lend support to the use of a localized approach to management of females that emphasizes neighborhood-scale manipulation of deer populations, but our research suggests that dispersal rates in females could be critical to long-term success.

New York↗

USGS2024

Visualizing wading bird optimal foraging decisions with aggregation behaviors using individual-based modeling

Foragers on patchy landscapes must efficiently balance time between searching for and consuming resources to meet their daily energetic requirements. Spatial aggregation foraging behaviors may improve foraging efficiency by sharing information on locations of resource hotspots. Wading birds are an example of patch foragers that form colonial aggregations during the breeding season to obtain sufficient prey energy to sustain themselves and their offspring each day. Here, we describe a spatially-explicit simulation model of wading bird optimal foraging that represents information sharing through visual cues. The overall purpose of the model is to describe how wading bird daily foraging and reproductive success may change with alternative water control management practices that determine spatial availability of prey for wading birds on the landscape, throughout their breeding seasons. Wading birds are simulated as individuals that operate independently, sampling and selecting among patches based on a prey density tolerance threshold, but also use information from other birds to inform their selection decisions. Foraging success is evaluated against the fundamental objectives of (a) fulfilling daily energetic demands and (b) minimizing predation exposure, by tracking individual daily energetic intake and time spent foraging. In this way, the model approximates population level dynamics of wading bird aggregations that emerge through collective decision making of birds simulated at the lower individual level. Key results of this study suggest that aggregation behaviors may improve population-level foraging success rates, and the optimal settling threshold may modulate when resources become more scarce or difficult to find. Thus, the model addresses ecological theory on the advantages of foraging in groups versus independently. This technique is appropriate for evaluating wading bird populations that forage on patchy landscapes, such as seasonally-pulsed wetlands, wherever sufficient information is available to describe (1) foraging behavior (e.g., feeding rate, flight speeds, patch selection decisions), (2) key landscape characteristics, (3) spatial distributions of prey densities among foraging patches, and (4) changes in prey densities through time. The model was designed to predict qualitative, testable spatial patterns of wading bird foraging movements which can be compared with empirical observations and empirically-derived habitat suitability models. These techniques can also be applied to other bird species, such as shorebirds, or more generally to any species that transits between discrete foraging patches.

Ecological Modelling↗

USGS2021

Elk migration influences the risk of disease spillover in the Greater Yellowstone Ecosystem

Wildlife migrations provide important ecosystem services, but they are declining. Within the Greater Yellowstone Ecosystem (GYE) some elk ( Cervus canadensis ) herds are losing migratory tendencies, which may increase spatiotemporal overlap between elk and livestock (domestic bison [ Bison bison ] and cattle [ Bos taurus ]), potentially exacerbating pathogen transmission risk. We combined disease, movement, demographic, and environmental data from eight elk herds in the GYE to examine the differential risk of brucellosis transmission (through aborted fetuses) from migrant and resident elk to livestock. For both migrants and residents, we found that transmission risk from elk to livestock occurred almost exclusively on private ranchlands as opposed to state or federal grazing allotments. Weather variability affected the estimated distribution of spillover risk from migrant elk to livestock, with a 7‐12% increase in migrant abortions on private ranchlands during years with heavier snowfall. In contrast, weather variability did not affect spillover risk from resident elk. Migrant elk were responsible for the majority (68%) of disease spillover risk to livestock because they occurred in greater numbers than resident elk. On a per‐capita basis, however, our analyses suggested that resident elk disproportionately contributed to spillover risk. In five of seven herds, we estimated that the per‐capita spillover risk was greater from residents than from migrants. Averaged across herds, an individual resident elk was 23% more likely than an individual migrant elk to abort on private ranchlands. Our results demonstrate links between migration behavior, spillover risk, and environmental variability, and highlight the utility of integrating models of pathogen transmission and host movement to generate new insights about the role of migration in disease spillover risk. Further, they add to the accumulating body of evidence across taxa that suggests that migrants and residents should be considered separately during investigations of wildlife disease ecology. Finally, our findings have applied implications for elk and brucellosis in the GYE, and suggest that managers should prioritize actions that maintain spatial separation of elk and livestock on private ranchlands during years when snowpack persists into the risk period.

Wyoming↗

USGS2016

Gravel-bed river floodplains are the ecological nexus of glaciated mountain landscapes

Gravel-bed river floodplains in mountain landscapes disproportionately concentrate diverse habitats, nutrient cycling, productivity of biota, and species interactions. Although stream ecologists know that river channel and floodplain habitats used by aquatic organisms are maintained by hydrologic regimes that mobilize gravel-bed sediments, terrestrial ecologists have largely been unaware of the importance of floodplain structures and processes to the life requirements of a wide variety of species. We provide insight into gravel-bed rivers as the ecological nexus of glaciated mountain landscapes. We show why gravel-bed river floodplains are the primary arena where interactions take place among aquatic, avian, and terrestrial species from microbes to grizzly bears and provide essential connectivity as corridors for movement for both aquatic and terrestrial species. Paradoxically, gravel-bed river floodplains are also disproportionately unprotected where human developments are concentrated. Structural modifications to floodplains such as roads, railways, and housing and hydrologicaltering hydroelectric or water storage dams have severe impacts to floodplain habitat diversity and productivity, restrict local and regional connectivity, and reduce the resilience of both aquatic and terrestrial species, including adaptation to climate change. To be effective, conservation efforts in glaciated mountain landscapes intended to benefit the widest variety of organisms need a paradigm shift that has gravel-bed rivers and their floodplains as the central focus and that prioritizes the maintenance or restoration of the intact structure and processes of these critically important systems throughout their length and breadth.

Science Advances↗

USGS2023

Near-field receiving-water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California—2020

Trace-metal concentrations in sediment and in the clam Limecola petalum (World Register of Marine Species, 2020; formerly reported as Macoma balthica and M. petalum ), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer (km) south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in south San Francisco Bay, California. This report includes the data collected by the U.S. Geological Survey (USGS) for January 2020–December 2020 (Cain and others, 2022). These data append to long-term datasets extending back to 1974. A major focus of the report is an integrated description of the 2020 data within the context of the longer, multidecadal dataset. This dataset supports the City of Palo Alto’s Near-Field Receiving- Water Monitoring Program, initiated in 1994. Silver and copper contamination substantially decreased at the site in the 1980s following the implementation by PARWQCP of advanced wastewater-treatment and source-control measures. Since the 1990s, concentrations of these elements in surface sediments have continued to decrease, although more slowly. For example, from 1994 to 2020, the minimum annual mean silver concentration—0.20 milligram per kilogram (mg/kg)—was observed in multiple years. In 2020, silver concentrations ranged from 0.18 to 0.28 mg/kg. These concentrations are 2 to 3 times higher than the regional background concentration. Presently (2020), sediment-copper concentrations appear to be near the regional background level. Over the same period (1994–2020), sedimentary iron and zinc exhibited modest decreases. Sedimentary aluminum, chromium, mercury, nickel, and selenium have not exhibited any trend. Since 1994, silver and copper concentrations in L. petalum have varied seasonally, apparently in response to a combination of site-specific metal exposures and cyclic growth and reproduction, as reported previously. Seasonal patterns for other elements, including chromium, mercury, nickel, selenium, and zinc, generally were similar in timing and magnitude as those for silver and copper. Downward trends in the silver and zinc concentrations in L. petalum during 1994–2020 were evident and appeared to be related to the general physiological condition of the clam, indicated by a condition index. Biological effects of elevated silver and copper contamination at the Palo Alto site have been interpreted from data collected during and after the recession of these contaminants. Concentrations of both elements in the soft tissues of L. petalum decreased with sedimentary copper and silver. This pattern was associated with changes in the reproductive activity of L. petalum , as well as the structure of the benthic invertebrate community. Reproductive activity of L. petalum increased as metal concentrations in L. petalum decreased (Hornberger and others, 2000), and presently is stable with almost all animals initiating reproduction in the fall and spawning the following spring. Analyses of the benthic community structure indicate that the infaunal invertebrate community has shifted from one dominated by several opportunistic species when silver and copper exposures were highest to one in which the species abundance is more evenly distributed, a pattern that indicates a more stable community that is subjected to fewer stressors. Importantly, this long-term change is unrelated to other metals and other measured environmental factors, including salinity and sediment composition. In addition, two of the opportunistic species ( Ampelisca abdita and Streblospio benedicti ) that brood their young and live on the surface of the sediment in tubes have shown a continual decrease in dominance coincident with the decrease in metals. Both species had short-lived rebounds in abundance in 2008, 2009, and 2010 and showed signs of increasing abundance in 2020. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in the last several years before 2008, showed a stable population. H. filiformis abundance increased slightly from 2011 to 2012 and returned to pre-2011 numbers in 2020. The reproductive mode of most species that were present in 2020 was indicative of species that were capable of movement either as pelagic larvae or as mobile adults. Although oviparous species were lower in number in this group, the authors hypothesize that these species will return slowly as more species move back into the area. The use of functional ecology was highlighted in the 2020 benthic community data, which showed that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of species that consume the sediment, or filter feed, those that have pelagic larvae that must survive landing on the sediment, and those that brood their young. The long-term recovery observed after the 1970s can be ascribed to the decrease in sediment pollutants.

California↗