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USGS2022

Economical defence of resources structures territorial space use in a cooperative carnivore

Ecologists have long sought to understand space use and mechanisms underlying patterns observed in nature. We developed an optimality landscape and mechanistic territory model to understand mechanisms driving space use and compared model predictions to empirical reality. We demonstrate our approach using grey wolves ( Canis lupus ). In the model, simulated animals selected territories to economically acquire resources by selecting patches with greatest value, accounting for benefits, costs and trade-offs of defending and using space on the optimality landscape. Our approach successfully predicted and explained first- and second-order space use of wolves, including the population's distribution, territories of individual packs, and influences of prey density, competitor density, human-caused mortality risk and seasonality. It accomplished this using simple behavioural rules and limited data to inform the optimality landscape. Results contribute evidence that economical territory selection is a mechanistic bridge between space use and animal distribution on the landscape. This approach and resulting gains in knowledge enable predicting effects of a wide range of environmental conditions, contributing to both basic ecological understanding of natural systems and conservation. We expect this approach will demonstrate applicability across diverse habitats and species, and that its foundation can help continue to advance understanding of spatial behaviour.

Montana↗

USGS2016

Application of a hybrid model to reduce bias and improve precision in population estimates for elk (Cervus elaphus) inhabiting a cold desert ecosystem

Accurately estimating the size of wildlife populations is critical to wildlife management and conservation of species. Raw counts or “minimum counts” are still used as a basis for wildlife management decisions. Uncorrected raw counts are not only negatively biased due to failure to account for undetected animals, but also provide no estimate of precision on which to judge the utility of counts. We applied a hybrid population estimation technique that combined sightability modeling, radio collar-based mark-resight, and simultaneous double count (double-observer) modeling to estimate the population size of elk in a high elevation desert ecosystem. Combining several models maximizes the strengths of each individual model while minimizing their singular weaknesses. We collected data with aerial helicopter surveys of the elk population in the San Luis Valley and adjacent mountains in Colorado State, USA in 2005 and 2007. We present estimates from 7 alternative analyses: 3 based on different methods for obtaining a raw count and 4 based on different statistical models to correct for sighting probability bias. The most reliable of these approaches is a hybrid double-observer sightability model (model M H ), which uses detection patterns of 2 independent observers in a helicopter plus telemetry-based detections of radio collared elk groups. Data were fit to customized mark-resight models with individual sighting covariates. Error estimates were obtained by a bootstrapping procedure. The hybrid method was an improvement over commonly used alternatives, with improved precision compared to sightability modeling and reduced bias compared to double-observer modeling. The resulting population estimate corrected for multiple sources of undercount bias that, if left uncorrected, would have underestimated the true population size by as much as 22.9%. Our comparison of these alternative methods demonstrates how various components of our method contribute to improving the final estimate and demonstrates why each is necessary.

Colorado↗

USGS2011

Amphibian monitoring in the Atchafalaya Basin

Amphibians are a diverse group of animals that includes frogs, toads, and salamanders. They are adapted to living in a variety of habitats, but most require water for at least one life stage. Amphibians have recently become a worldwide conservation concern because of declines and extinctions even in remote protected areas previously thought to be safe from the pressures of habitat loss and degradation. Amphibians are an important part of ecosystem dynamics because they can be quite abundant and serve both as a predator of smaller organisms and as prey to a suite of vertebrate predators. Their permeable skin and aquatic life history also make them useful as indicators of ecosystem health. Since 2002, the U.S. Geological Survey has been studying the frog and toad species inhabiting the Atchafalaya Basin to monitor for population declines and to better understand how the species are potentially affected by disease, environmental contaminants, and climate change.

Louisiana↗

USGS2017

US Fish and Wildlife Service and the USA National Phenology Network

Understanding the seasonal cycles of plants and animals, how they are changing, and how these changes can inform management, operations, and interpretation is critical to the mission of the US Fish and Wildlife Service (FWS): to work with others to conserve, protect, and enhance fish, wildlife, plants, and their habitats for the continuing benefit of the American people. Phenology monitoring is particularly relevant to the management of national wildlife refuges.

Report↗

USGS2016

Age- and season-specific variation in local and long-distance movement behavior of golden eagles

Animal movements can determine the population dynamics of wildlife. We used telemetry data to provide insight into the causes and consequences of local and long-distance movements of multiple age classes of conservation-reliant golden eagles ( Aquila chrysaetos) in the foothills and mountains near Tehachapi, California. We estimated size and habitat-related correlates of 324 monthly 95 % home ranges and 317 monthly 50 % core areas for 25 birds moving locally over 2.5 years. We also calculated daily, hourly, and total distances traveled for the five of these birds that engaged in long-distance movements. Mean (±SD) monthly home-range size was 253.6 ± 429.4 km 2 and core-area size was 26.4 ± 49.7 km 2 . Consistent with expectations, space used by pre-adults increased with age and was season-dependent but, unexpectedly, was not sex-dependent. For all ages and sexes, home ranges and core areas were dominated by both forest & woodland and shrubland & grassland habitat types. When moving long distances, eagles traveled up to 1588.4 km (1-way) in a season at highly variable speeds (63.7 ± 69.0 km/day and 5.2 ± 10.4 km/h) that were dependent on time of day. Patterns of long-distance movements by eagles were determined by age, yet these movements had characteristics of more than one previously described movement category (migration, dispersal, etc.). Our results provide a context for differentiating among types of movement behaviors and their population-level consequences and, thus, have implications for management and conservation of golden eagle populations. .

California, Idaho, Montana, Nevada, Oregon, Utah, ↗

USGS2017

Harvesting wildlife affected by climate change: a modelling and management approach for polar bears

The conservation of many wildlife species requires understanding the demographic effects of climate change, including interactions between climate change and harvest, which can provide cultural, nutritional or economic value to humans. We present a demographic model that is based on the polar bear Ursus maritimus life cycle and includes density-dependent relationships linking vital rates to environmental carrying capacity ( K ). Using this model, we develop a state-dependent management framework to calculate a harvest level that (i) maintains a population above its maximum net productivity level (MNPL; the population size that produces the greatest net increment in abundance) relative to a changing K , and (ii) has a limited negative effect on population persistence. Our density-dependent relationships suggest that MNPL for polar bears occurs at approximately 0·69 (95% CI = 0·63–0·74) of K . Population growth rate at MNPL was approximately 0·82 (95% CI = 0·79–0·84) of the maximum intrinsic growth rate, suggesting relatively strong compensation for human-caused mortality. Our findings indicate that it is possible to minimize the demographic risks of harvest under climate change, including the risk that harvest will accelerate population declines driven by loss of the polar bear's sea-ice habitat. This requires that (i) the harvest rate – which could be 0 in some situations – accounts for a population's intrinsic growth rate, (ii) the harvest rate accounts for the quality of population data (e.g. lower harvest when uncertainty is large), and (iii) the harvest level is obtained by multiplying the harvest rate by an updated estimate of population size. Environmental variability, the sex and age of removed animals and risk tolerance can also affect the harvest rate. Synthesis and applications . We present a coupled modelling and management approach for wildlife that accounts for climate change and can be used to balance trade-offs among multiple conservation goals. In our example application to polar bears experiencing sea-ice loss, the goals are to maintain population viability while providing continued opportunities for subsistence harvest. Our approach may be relevant to other species for which near-term management is focused on human factors that directly influence population dynamics within the broader context of climate-induced habitat degradation.

Journal of Applied Ecology↗

USGS2026

Annotated bibliography of scientific research on new world screwworm ( Cochliomyia hominivorax ) myiasis in wildlife

The New World screwworm ( Cochliomyia hominivorax ; NWS) is a parasitic blowfly that lays its eggs in open wounds of live, warm-blooded animals including livestock, wildlife, and potentially humans. The larvae consume living animal tissue, and if untreated, the infestation can lead to death. Although NWS was eradicated in the United States in 1966, it has been moving northward from its endemic range in South America during the past decade and could seriously threaten the health of U.S. wildlife populations, making detection, treatment, and surveillance of the disease far more difficult across this multi-sector disease system. As the likelihood of NWS reintroduction to the United States increases, veterinarians, wildlife managers, and conservation specialists need to be informed and prepared to respond. The existing knowledge about NWS interactions with wildlife hosts is lacking, especially regarding North American species where the NWS has been eradicated for more than 50 years. To address this knowledge gap, we compiled an annotated bibliography that consolidates key information from the existing literature on NWS infestation in wild animals.

Open-File Report↗

USGS2015

Wyoming Basin Rapid Ecoregional Assessment

The Wyoming Basin Rapid Ecoregional Assessment was conducted in partnership with the Bureau of Land Management (BLM). The overall goals of the BLM Rapid Ecoregional Assessments (REAs) are to identify important ecosystems and wildlife habitats at broad spatial scales; identify where these resources are at risk from Change Agents, including development, wildfire, invasive species, disease and climate change; quantify cumulative effects of anthropogenic stressors; and assess current levels of risk to ecological resources across a range of spatial scales and jurisdictional boundaries by assessing all lands within an ecoregion. There are several components of the REAs. Management Questions, developed by the BLM and stakeholders for the ecoregion, identify the regionally significant information needed for addressing land-management responsibilities. Conservation Elements represent regionally significant species and ecological communities that are of management concern. Change Agents that currently affect or are likely to affect the condition of species and communities in the future are identified and assessed. REAs also identify areas that have high conservation potential that are referred to as “large intact areas.” At the ecoregion level, the ecological value of large intact areas is based on the assumption that because these areas have not been greatly altered by human activities (such as development), they are more likely to contain a variety of plant and animal communities and to be resilient and resistant to changes resulting from natural disturbances such as fire, insect outbreaks, and disease. The Wyoming Basin Ecoregion encompasses approximately 133,656 square kilometers (51,604.87 square miles), including portions of Wyoming, Colorado, Utah, Idaho, and Montana. The Wyoming Basin has some of the highest quality wildlife habitats remaining in the Intermountain West. The wide variety of habitats includes intermountain basins dominated by sagebrush shrublands interspersed with deciduous and conifer woodlands and montane or subalpine forests at higher elevations. The Wyoming Basin also supports ranching and agricultural operations that are important to the region’s economy and vital to conserving habitats for wildlife. The region also contains abundant energy resources, including large natural gas reserves and areas of high wind-energy potential. Combined with increased residential and industrial development, fast-paced energy development is resulting in notable land-use changes, including habitat loss and fragmentation. In the Wyoming Basin REA, we evaluated the following seven communities as Conservation Elements: streams and rivers, wetlands, riparian forests and shrublands, sagebrush steppe, desert shrublands, foothill shrublands and woodlands, and mountain forests and alpine zones. We evaluated a total of 14 species and species assemblages as Conservation Elements: aspen forests and woodlands, five-needle pine forests and woodlands, juniper woodlands, cutthroat trout, three-species fish assemblage, northern leatherside chub, sauger, spadefoot assemblage, greater sage-grouse, golden eagle, ferruginous hawk, sagebrush-obligate birds, pygmy rabbit, and mule deer. We evaluated Management Questions (Core and Integrated) for each species and community for the Wyoming Basin REA. Core Management Questions address primary management issues, including (1) where is the Conservation Element, and what are its key ecological attributes (characteristics of species and communities that may affect their long-term persistence or viability); (2) what and where are the Change Agents; and (3) how do the Change Agents affect the key ecological attributes? Integrated Management Questions synthesize the Core Management Questions as follows: (1) where are the areas with high landscape-level ecological values; (2) where are the areas with high landscape-level risks; and (3) where are the potential areas for conservation, restoration, and development? The associated maps and key findings for each Management Question are summarized for each Conservation Element in individual chapters. Additional chapters on landscape intactness and an REA synthesis are included.

Colorado, Idaho, Montana, Utah, Wyoming↗

USGS2013

Microhabitat selection, demography, and correlates of home range size for the King Rail ( Rallus elegans )

Animal movements and habitat selection within the home range, or microhabitat selection, can provide insights into habitat requirements, such as foraging and area requirements. The King Rail ( Rallus elegans ) is a wetland bird of high conservation concern in the United States, but little is known about its movements, habitats, or demography. King Rails ( n = 34) were captured during the 2010–2011 breeding seasons in the coastal marshes of southwest Louisiana and southeast Texas. Radio telemetry and direct habitat surveys of King Rail locations were conducted to estimate home ranges and microhabitat selection. Within home ranges, King Rails selected for greater plant species richness and comparatively greater coverage of Phragmites australis , Typha spp., and Schoenoplectus robustus . King Rails were found closer to open water compared to random locations placed 50 m from King Rail locations. Home ranges ( n = 22) varied from 0.8–32.8 ha and differed greatly among sites. Home range size did not vary by year or sex; however, increased open water, with a maximum of 29% observed in the study, was correlated with smaller home ranges. Breeding season cumulative survivorship was 89% ± 22% in 2010 and 61% ± 43% in 2011, which coincided with a drought. With an equal search effort, King Rail chicks and juveniles observed in May-June decreased from 110 in 2010 to only 16 in the drier year of 2011. The findings show King Rail used marsh with ≤ 29% open water and had smaller home ranges when open water was more abundant.

Louisiana, Texas↗

USGS2015

A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA - An increasingly obscure perspective”

We appreciate the conversation put forward by Iversen et al. (2015) in their response to our article “Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix ” in the 2015 environmental DNA special issue of Biological Conservation. We agree with Iversen et al.'s concern about overly optimistic conclusions that could be drawn from the current eDNA literature. One hope for eDNA technology is that it can be used in estimating abundance or population density. Evidence suggests that eDNA measurements correlate with total biomass (Takahara et al., 2012) rather than abundance. We demonstrate a similar relationship between biomass and eDNA shedding rates. Nevertheless, without field testing of these methods and specific survey protocols, we cannot make strong conclusions regarding the technique's field applicability. In our manuscript, we attempted to point out areas in which more research is needed.

Biological Conservation↗

USGS2008

A survey of the indigenous microbiota (bacteria) in three species of mussels from the Clinch and Holston Rivers, Virginia

Freshwater mussel conservation efforts by many federal and state agencies have increased in recent years. This has led to a greater number of stream surveys, in which mussel die-offs involving high numbers of dead and moribund animals are being observed and reported with greater frequency. Typically, die-offs have been incidentally observed while research was being done for other purposes, therefore, accurate mortality data have been difficult to obtain. Specifically, seasonal die-offs were noted in localized areas of the Clinch and Holston Rivers, Virginia, and to lesser degrees, in neighboring rivers in this geographic region, including southeast Virginia. The observed mussel species affected were primarily the slabside pearlymussel ( Lexingtonia dolabelloides ) and to lesser extents, the pheasantshell ( Actinonaias pectorosa ), rainbow mussel ( Villosa iris ), and the endangered shiny pigtoe ( Fusconaia cor ). To determine if a bacterial pathogen might be involved in these recurring mussel die-offs, this study examined characteristics of the indigenous microbiota (bacteria) from healthy mussels from sites on the Clinch and Holston Rivers where die-offs were previously observed. These baseline data will allow for recognition of bacterial pathogens in future mussel die-offs. Means for total bacteria from soft tissues ranged from 1.77 × 10 5 to 3.55 × 10 6 cfu/g; whereas, the range in means from fluids was 2.92 × 10 4 to 8.60 × 10 5 cfu/mL. A diverse microbiota were recovered, including species that are common in freshwater aquatic environments. The most common bacterial groups recovered were motile Aeromonas spp. and nonfermenting bacteria. Flavobacterium columnare , a pathogen to cool- and warm-water fishes was recovered from one specimen, a Villosa iris from the Clinch River.

Virginia↗

USGS2015

Health condition of juvenile Chelonia mydas related to fibropapillomatosis in southeast Brazil

Packed cell volume (PCV), plasma biochemistry, visual body condition (BC), and calculated body condition index (BCI) were evaluated in 170 wild juvenile green sea turtles Chelonia mydas from an aggregation in the effluent canal of a steel mill in Brazil. Occurrence of cutaneous fibropapillomatosis (FP) was observed in 44.1% of the animals examined. BCI alone did not differ significantly between healthy animals and those afflicted with FP. However, all turtles with low BCI were severely afflicted and were uremic, hypoglycemic, and anemic in relation to healthy animals. Severe FP was not always reflected by a poor health condition of the individual. Clinical evaluation and plasma biochemistry indicated that most animals afflicted with FP were in good health condition. Differences in FP manifestations and associated health conditions in different geographic regions must be assessed by long-term health monitoring programs to help define priorities for conservation efforts.

Diseases of Aquatic Organisms↗

USGS2024

Rowing in the same direction using MIX— A tool to initiate the melding of individual disciplinary experts into an integrated interdisciplinary team

A common problem for interdisciplinary sustainability research is that scientists trained in different disciplines are often not rowing their boat effectively in the same direction. Sustainability tools can aid the implementation of this team-melding process. Here, our purpose is to illustrate our M ulti-step I ntegrated graphical and structured discussion e X ercise ( MIX ) tool that transforms diverse disciplinary experts into an interdisciplinary team. We use a visual puzzle-solving approach based on the blind men and the elephant metaphor (BMEM) because this story illustrates the shortcomings of siloed viewpoints and the need to integrate multiple perspectives. Our six-step MIX tool provides step-specific objectives, group activities, discussion questions, and learning outcomes. Activities promote experiential learning for team problem solving. The step-specific structured discussions are designed to get each individual to change their focus from their own discipline (i.e., an elephant trunk, tail, leg, or other isolated pieces of the whole animal) to the team’s interdisciplinary goal (i.e., the whole elephant or the entire multi-faceted problem). In our example proof of concept, we show that a narrow focus on only economic yield (trunk), ecological conservation (legs), or human values (tail) misrepresents the biologically involved sustainability problem (elephant) and blocks innovative solutions.

Sustainability↗

USGS2024

Evaluation of larval sea lamprey Petromyzon marinus growth in the laboratory: Influence of temperature and diet

Conservation aquaculture provides a means for promoting environmental stewardship, useful both in the context of restoring native species and limiting the production of invasive species. Aquaculture of lampreys is a relatively recent endeavor aimed primarily at producing animals to support the restoration of declining native populations. However, in the Laurentian Great Lakes, where sea lamprey Petromyzon marinus are invasive, the ability to acquire a reliable source of certain life stages would be a significant benefit to those controlling their populations and studying the species. Here, we apply methodologies developed for Pacific lamprey Entosphenus tridentatus restoration to investigate the feasibility of rearing larval sea lamprey under laboratory conditions. In two experiments lasting 3 and 9 months, we tested the effects of different dietary sources and water temperature (ambient and controlled) on the survival and growth of wild-caught larvae. Rearing conditions had no effect on mortality, as larval survival was 100% in both experiments. Growth was significantly affected by water temperature, with the highest average daily growth rates observed at 22 and 15°C (0.14 mm day −1 ) and lowest at 8°C (0.06 mm day −1 ). Diets of yeast alone (0.19 and 0.21 g L −1 ) performed better than those comprising a mixture of yeast and other material when fed 3 times weekly (rice flour, wheat flour, fish meal; 0.19 and 0.32 g L −1 ). Averaged across the three constant temperatures (8, 15, and 22°C), larvae fed on yeast grew 0.13 mm day −1 and 0.01 g day −1 , whereas on yeast + fish meal, they grew 0.09 mm day −1 and 0.01 g day −1 . At ambient temperature (4–20°C), larvae fed on yeast grew 0.15 mm day −1 and 0.01 g day −1 , whereas those fed on yeast + wheat flour grew 0.13 mm day −1 and 0.008 g day −1 and those fed on yeast + rice flour grew 0.12 mm day −1 and 0.009 g day −1 . An experimental duration of 90 days was sufficient to detect significant changes to larval sea lamprey growth stemming from temperature variation. Overall, rearing of sea lamprey in captivity appears feasible at low density (31–32 g m −2 and 17–25 larvae m −2 ), but uncertainties remain regarding the most appropriate means of providing adequate feed for these fish in high-density conditions.

Aquaculture Research↗

USGS2011

Use of Rhodamine B as a biomarker for oral plague vaccination of prairie dogs

Oral vaccination against Yersinia pestis could provide a feasible approach for controlling plague in prairie dogs ( Cynomys spp.) for conservation and public health purposes. Biomarkers are useful in wildlife vaccination programs to demonstrate exposure to vaccine baits. Rhodamine B (RB) was tested as a potential biomarker for oral plague vaccination because it allows nonlethal sampling of animals through hair, blood, and feces. We found that RB is an appropriate marker for bait uptake studies of C. ludovicianus) when used at concentrations <0.5% of bait mass dosed to deliver >10 mg RB per kg target animal mass. Whiskers with follicles provided the best sample for RB detection.

Journal of Wildlife Diseases↗

USGS2006

Wildlife tuberculosis in South African conservation areas: Implications and challenges

Tuberculosis, caused by Mycobacterium bovis, was first diagnosed in African buffalo in South Africa's Kruger National Park in 1990. Over the past 15 years the disease has spread northwards leaving only the most northern buffalo herds unaffected. Evidence suggests that 10 other small and large mammalian species, including large predators, are spillover hosts. Wildlife tuberculosis has also been diagnosed in several adjacent private game reserves and in the Hluhluwe-iMfolozi Park, the third largest game reserve in South Africa. The tuberculosis epidemic has a number of implications, for which the full effect of some might only be seen in the long-term. Potential negative long-term effects on the population dynamics of certain social animal species and the direct threat for the survival of endangered species pose particular problems for wildlife conservationists. On the other hand, the risk of spillover infection to neighboring communal cattle raises concerns about human health at the wildlife-livestock-human interface, not only along the western boundary of Kruger National Park, but also with regards to the joint development of the Greater Limpopo Transfrontier Conservation Area with Zimbabwe and Mozambique. From an economic point of view, wildlife tuberculosis has resulted in national and international trade restrictions for affected species. The lack of diagnostic tools for most species and the absence of an effective vaccine make it currently impossible to contain and control this disease within an infected free-ranging ecosystem. Veterinary researchers and policy-makers have recognized the need to intensify research on this disease and the need to develop tools for control, initially targeting buffalo and lion. ?? 2005 Elsevier B.V. All rights reserved.

Kruger National Park↗

USGS2018

Investigating home range, movement pattern, and habitat selection of Bar-headed Geese during breeding season at Qinghai Lake, China

The Bar-headed Goose is an important species in Asia, both culturally and ecologically. While prior studies have shown Qinghai Lake supports one of the largest breeding areas for Bar-headed Geese, little is known regarding the species movement ecology during the breeding season. In this study, we examined Bar-headed Goose home range size within the breeding grounds at Qinghai Lake and documented their daily movement patterns and habitat selection. We also identified several key breeding sites surrounding Qinghai Lake. Our research provides valuable information on this sensitive species that could help develop the strategy for waterfowl conservation and disease control.

Qinghai Lake↗

USGS2018

Effect of heat and singeing on stable hydrogen isotope ratios of bird feathers and implications for their use in determining geographic origin

Rationale Stable hydrogen isotope ( δ 2 H) ratios of animal tissues are useful for assessing movement and geographic origin of mobile organisms. However, it is uncertain whether heat and singeing affects feather δ 2 H values and thus subsequent geographic assignments. This is relevant for birds of conservation interest that are burned and killed at concentrating solar‐energy facilities that reflect sunlight to a receiving tower and generate a solar flux field. Methods We used a controlled experiment to test the effect of known heat loads (exposure to 200, 250 or 300°C for 1 min) on the morphology and δ 2 H values of feathers from two songbird species. Subsequently, we examined the effects of singeing on δ 2 H values of feathers from three other songbird species that were found dead in the field at a concentrating solar‐energy facility. Results Relative to control samples, heating caused visual morphological changes to feathers, including shriveling at 250°C and charring at 300°C. The δ 2 H values significantly declined by a mean of 27.8‰ in experimental samples exposed to 300°C. There was no statistically detectable difference between δ 2 H values of the singed and unsinged portions of field‐collected feathers from the same bird. Conclusions Limited singeing that did not dramatically alter the feather morphology did not substantially affect δ 2 H values of feathers from these songbirds. However, higher temperatures induced charring and reduced δ 2 H values. Therefore, severely charred feathers should be avoided when selecting feathers for δ 2 H‐based assessment of geographic origin.

Rapid Communications in Mass Spectrometry↗