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At least 433 records · Page 24Linked to original sources
USGS2025

Groundwater structures fish growth and production across a riverscape

Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises water temperature and flow regimes, thus mediating how habitat complexity is expressed. Yet, how stable habitats structure growth and production within the broader landscape matrix is not well understood. In this study, we explored the effects of groundwater on spatiotemporal variation in growth and production for juvenile Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) across the upper Snake River catchment, Wyoming, USA. We combined machine learning techniques and remotely sensed landscape data to estimate groundwater availability across the river network, which we linked to stream temperature regimes and conspecific density. We then used Bayesian hierarchical models to quantify the effects of temperature, density and groundwater on spatiotemporal variation in fish growth and production in 52 focal reaches. Finally, we predicted body size trajectories and trends in total production continuously over both space and time to understand the effect of groundwater at the riverscape scale. Groundwater discharged to streams where topography changes abruptly in valley-bottom areas underlain by coarse glacial deposits. Groundwater stabilised temperature regimes and was associated with high trout densities. Temperature and density, in turn, interacted to influence growth rates: growth increased strongly with temperature, but this effect was reduced when density was high. Accordingly, variation in groundwater availability among stream reaches diversified growth and production regimes. In reaches with low groundwater availability, growth and production declined over time from summer maxima. In contrast, in reaches with high groundwater availability, temporal trends in growth and production were hump-shaped—peaking in autumn—and mean production was greater. At the riverscape scale, temporal asynchrony in growth rates generated convergent spatial variation in growth capacity, but—when combined with density—led to the formation of distinct hotspots of production. Our results demonstrate how groundwater, an important driver of aquatic ecosystem heterogeneity, structures trout growth and production across space and time. Importantly, rare, but stable habitats may disproportionately affect ecological processes and serve as key sources of population diversity at larger spatial scales.

Wyoming↗
USGS2020

Testing the interactive effects of flooding and salinity on tidal marsh plant productivity

Tidal wetlands support plant communities that facilitate carbon storage, accrete soil, and provide habitat for terrestrial and aquatic species. Climate change is likely to alter estuaries through sea-level rise and changing precipitation patterns, although the ecological responses are uncertain. We were interested in plant responses to physiological stress induced by elevated water salinity and flooding conditions, which may be more prevalent under climate change. . We used a greenhouse experiment and factorial flooding (1, 12, 24, and 48 % time) and salinity (0, 5, 15, 30 PSU) treatments to evaluate the productivity responses of three emergent herbaceous species ( Carex lyngbyei, Triglochin maritima, and Argentina pacifica ) common to tidal marshes of the Pacific Northwest, USA. We measured weekly changes in plant height and final above and belowground biomass for all species after 10 weeks. Increased salinity reduced final above and belowground biomass significantly in all three species, with A. pacifica responding the most, followed by C. lyngbyei and T. maritima . Increased flooding also reduced total biomass in A. pacifica and T. maritima . There was a significant response in C. lyngbyei aboveground biomass and A. pacifica height to the flooding-salinity interaction. These results indicate emergent plant community composition may change in response to novel climate conditions in estuaries, driven by distinct physiological tolerances to salinity and flooding, and highlight the importance of considering multiple climate drivers when projecting ecosystem change. This may be especially true for estuaries that currently have prolonged freshwater phases like those in the Pacific Northwest.

Aquatic Botany↗
USGS2024

Incorporating projected climate conditions to map future riparian refugia

Identifying areas expected to remain buffered from climate change and maintain biodiversity and ecological function (i.e., climate refugia) is important for climate adaptation planning. As structurally diverse transitional zones between terrestrial and aquatic environments, riparian areas are often biological hotspots and provide critical corridors for species movement, particularly in arid and semi-arid regions. In our study region in the western and central USA, identifying riparian areas that could serve as climate refugia is a priority for wildlife managers. We mapped areas with connected riparian habitats that, based on landscape diversity and projected changes in summer temperatures and landscape runoff, are expected to serve as climate refugia. To incorporate uncertainty and balance the need for near- and long-term planning, we mapped potential refugia for 2 future time periods (2040–2069, 2070–2099) based on 2 climate models that represented divergent but plausible climate outcomes. The approach we developed is not constrained by physiology or behavior of target species and can be used to identify areas expected to fare comparatively well under a wide range of future climate scenarios. Our approach can also be used to identify areas where restoration could increase riparian connectedness and climate resilience.

Colorado, Indiana, Kansas, Montana, North Dakota, ↗
USGS2012

Importance of terrestrial arthropods as subsidies in lowland Neotropical rain forest stream ecosystems

The importance of terrestrial arthropods has been documented in temperate stream ecosystems, but little is known about the magnitude of these inputs in tropical streams. Terrestrial arthropods falling from the canopy of tropical forests may be an important subsidy to tropical stream food webs and could also represent an important flux of nitrogen (N) and phosphorus (P) in nutrient-poor headwater streams. We quantified input rates of terrestrial insects in eight streams draining lowland tropical wet forest in Costa Rica. In two focal headwater streams, we also measured capture efficiency by the fish assemblage and quantified terrestrially derived N- and P-excretion relative to stream nutrient uptake rates. Average input rates of terrestrial insects ranged from 5 to 41 mg dry mass/m 2 /d, exceeding previous measurements of aquatic invertebrate secondary production in these study streams, and were relatively consistent year-round, in contrast to values reported in temperate streams. Terrestrial insects accounted for half of the diet of the dominant fish species, Priapicthys annectens. Although terrestrially derived fish excretion was found to be a small flux relative to measured nutrient uptake rates in the focal streams, the efficient capture and processing of terrestrial arthropods by fish made these nutrients available to the local stream ecosystem. This aquatic-terrestrial linkage is likely being decoupled by deforestation in many tropical regions, with largely unknown but potentially important ecological consequences.

Biotropica↗
USGS2020

Species richness responses to water withdrawal scenarios and minimum flow levels: Evaluating presumptive standards in the Tennessee and Cumberland River basins

Water resource managers are challenged to balance growing water demand with protecting aquatic ecosystems and biodiversity. Management decisions can benefit from improved understanding of water withdrawal impacts on hydrologic regimes and ecological assemblages. This study used Ecological Limit Functions for fish groups within the Tennessee and Cumberland river basins to predict species richness responses under simulated constant-rate (CR) and percent-of-flow (POF) withdrawals and for different minimum flow level protections. Streamflow characteristics (SFC) and richness were generally less sensitive to POF withdrawals than CR withdrawals among sites, fish groups, and ecoregions. Species richness generally declined with increasing withdrawals, but responses were variable depending on site-specific departures of SFCs from reference conditions, drainage area, fish group, ecoregion, and minimum flow level. Under POF withdrawals, 10% and 20% daily flow reductions often resulted in loss of <1 species and/or ≤5% richness among fish groups. Median ecological withdrawal thresholds ranged from 3.5-31% for POF withdrawals and from 0.01-0.92 m3/s for CR withdrawals across fish groups and ecoregions. Application of minimum flow level cutoffs often resulted in damping effects on SFC and richness responses, indicating that protection of low streamflows may mitigate hydrologic alteration and fish species richness loss related to water withdrawals. Site-specific and regionally summarized responses of flow regimes and fish assemblages under alternative withdrawal strategies in this study may be useful in informing water management decisions regarding streamflow allocation and maintaining ecological flows.

Cumberland River basin↗
USGS2014

Multi-trophic resilience of boreal lake ecosystems to forest fires

Fires are the major natural disturbance in the boreal forest, and their frequency and intensity will likely increase as the climate warms. Terrestrial nutrients released by fires may be transported to boreal lakes, stimulating increased primary productivity, which may radiate through multiple trophic levels. Using a before‐after‐control‐impact (BACI) design, with pre‐ and postfire data from burned and unburned areas, we examined effects of a natural fire across several trophic levels of boreal lakes, from nutrient and chlorophyll levels, to macroinvertebrates, to waterbirds. Concentrations of total nitrogen and phosphorus were not affected by the fire. Chlorophyll a levels were also unaffected, likely reflecting the stable nutrient concentrations. For aquatic invertebrates, we found that densities of three functional feeding groups did not respond to the fire (filterers, gatherers, scrapers), while two groups increased (shredders, predators). Amphipods accounted for 98% of shredder numbers, and we hypothesize that fire‐mediated habitat changes may have favored their generalist feeding and habitat ecology. This increase in amphipods may, in turn, have driven increased predator densities, as amphipods were the most numerous invertebrate in our lakes and are commonly taken as prey. Finally, abundance of waterbird young, which feed primarily on aquatic invertebrates, was not affected by the fire. Overall, ecosystems of our study lakes were largely resilient to forest fires, likely due to their high initial nutrient concentrations and small catchment sizes. Moreover, this resilience spanned multiple trophic levels, a significant result for ecologically similar boreal regions, especially given the high potential for increased fires with future climate change.

Alaska↗
USGS2016

Model selection and assessment for multi­-species occupancy models

While multi-species occupancy models (MSOMs) are emerging as a popular method for analyzing biodiversity data, formal checking and validation approaches for this class of models have lagged behind. Concurrent with the rise in application of MSOMs among ecologists, a quiet regime shift is occurring in Bayesian statistics where predictive model comparison approaches are experiencing a resurgence. Unlike single-species occupancy models that use integrated likelihoods, MSOMs are usually couched in a Bayesian framework and contain multiple levels. Standard model checking and selection methods are often unreliable in this setting and there is only limited guidance in the ecological literature for this class of models. We examined several different contemporary Bayesian hierarchical approaches for checking and validating MSOMs and applied these methods to a freshwater aquatic study system in Colorado, USA, to better understand the diversity and distributions of plains fishes. Our findings indicated distinct differences among model selection approaches, with cross-validation techniques performing the best in terms of prediction.

Ecology↗
USGS2015

Process, policy, and implementation of pool-wide drawdowns on the Upper Mississippi River: a promising approach for ecological restoration of large impounded rivers

The Upper Mississippi River (UMR) has been developed and subsequently managed for commercial navigation by the U.S. Army Corps of Engineers (USACE). The navigation pools created by a series of lock and dams initially provided a complex of aquatic habitats that supported a variety of fish and wildlife. However, biological productivity declined as the pools aged. The River Resources Forum, an advisory body to the St. Paul District of the USACE, established a multiagency Water Level Management Task Force (WLMTF) to evaluate the potential of water level management to improve ecological function and restore the distribution and abundance of fish and wildlife habitat. The WLMTF identified several water level management options and concluded that summer growing season drawdowns at the pool scale offered the greatest potential to provide habitat benefits over a large area. Here we summarize the process followed to plan and implement pool-wide drawdowns on the UMR, including involvement of stakeholders in decision making, addressing requirements to modify reservoir operating plans, development and evaluation of drawdown alternatives, pool selection, establishment of a monitoring plan, interagency coordination, and a public information campaign. Three pool-wide drawdowns were implemented within the St. Paul District and deemed successful in providing ecological benefits without adversely affecting commercial navigation and recreational use of the pools. Insights are provided based on more than 17&thinsp;years of experience in planning and implementing drawdowns on the UMR.

River Research and Applications↗
USGS2018

Evaluating relationships between native fishes and habitat in streams affected by oil and natural gas development

Oil and natural gas (ONG) development can affect aquatic ecosystems through water contamination, water withdrawals and disturbance of soil and vegetation (surface disturbance) from infrastructure development. Research on how these potential sources of watershed and aquatic ecosystem impairment can affect fish assemblages is limited. Fish–habitat relationships were evaluated across stream sites experiencing differing levels of ONG development. Colorado River cutthroat trout, Oncorhynchus clarkii pleuriticus (Cope), and mottled sculpin, Cottus bairdii Girard, presence and abundance were associated with habitat conditions predominantly found in the less disturbed streams, such as higher proportion of shrub cover, greater stream depths and gravel substrate. Mountain sucker, Catostomus platyrhynchus (Cope), appeared to be a habitat generalist and was able to persist in a wide range of conditions, including degraded sites. Natural resource managers can use habitat preferences of these fish species to establish the development plans that mitigate negative effects of ONG development by protecting the aquatic habitats they rely upon.

Wyoming↗
USGS2013

Hydrogeomorphology explains acidification-driven variation in aquatic biological communities in the Neversink Basin, USA

Describing the distribution of aquatic habitats and the health of biological communities can be costly and time-consuming; therefore, simple, inexpensive methods to scale observations of aquatic biota to watersheds that lack data would be useful. In this study, we explored the potential of a simple “hydrogeomorphic” model to predict the effects of acid deposition on macroinvertebrate, fish, and diatom communities in 28 sub-watersheds of the 176-km 2 Neversink River basin in the Catskill Mountains of New York State. The empirical model was originally developed to predict stream-water acid neutralizing capacity (ANC) using the watershed slope and drainage density. Because ANC is known to be strongly related to aquatic biological communities in the Neversink, we speculated that the model might correlate well with biotic indicators of ANC response. The hydrogeomorphic model was strongly correlated to several measures of macroinvertebrate and fish community richness and density, but less strongly correlated to diatom acid tolerance. The model was also strongly correlated to biological communities in 18 sub-watersheds independent of the model development, with the linear correlation capturing the strongly acidic nature of small upland watersheds (<1 km 2 ). Overall, we demonstrated the applicability of geospatial data sets and a simple hydrogeomorphic model for estimating aquatic biological communities in areas with stream-water acidification, allowing estimates where no direct field observations are available. Similar modeling approaches have the potential to complement or refine expensive and time-consuming measurements of aquatic biota populations and to aid in regional assessments of aquatic health.

New York↗
USGS2026

DRIFteRS: A dataset of drift invertebrate densities in streams and rivers across western North America, 1997–2024

Prey availability is among the most influential and highly variable determinants of fish growth and freshwater habitat carrying capacity, yet it remains understudied compared to physical habitat variables (Ouellet et al., 2025; Rosenfeld et al., 2014; Weber et al., 2017). We often lack a clear understanding of how much food is available to fishes, how it varies spatially and temporally, and how it influences responses to restoration (Ouellet et al., 2025; Rossi et al., 2024; Wipfli et al., 2010). Drift invertebrates—the primary food source for juvenile salmonids and other drift-foraging fishes—play a pivotal role in these dynamics. To better understand the spatiotemporal variability of drift invertebrate abundance and biomass across the freshwater range of drift-feeding salmonids in western North America, we compiled the DRift Invertebrates For salmonids in River Systems (DRIFteRS) dataset. The dataset encompasses 6125 samples of drift invertebrates, and, for a subset of drift samples, associated benthic invertebrate density data, collected from 1360 reaches on 459 unique rivers and streams spanning 55 river basins considered hydrologically independent (i.e., not nested within the same larger watershed) across British Columbia, Canada, and the U.S. states of Alaska, Arizona, California, Colorado, Idaho, Nevada, New Mexico, Oregon, Utah, Washington, and Wyoming. Sample sites represent a diverse array of river and stream habitats (e.g., headwater, mainstem, side channel), in watersheds with diverse land uses (e.g., urban, wilderness, agricultural), and disturbance histories (e.g., fire, restoration). Collected between 1997 and 2024, the data span the full calendar year and capture daily and seasonal patterns in drift abundance and biomass densities. When paired with water quality and quantity data as well as remotely sensed environmental landscape data, such as land use/land cover, climate, and disturbance history, channel morphology, and riparian vegetation composition, the DRIFteRS dataset can aid in identifying key drivers of drift invertebrate densities and mean body size and support predictive modeling in unsampled locations and times. The dataset may also be used to analyze aquatic-terrestrial resource flows, derive prey-encounter rates and profitability (mean prey size), and inform broader investigations of sit-and-wait foraging ecology, especially when paired with data on drift-foraging predators. For salmonid-focused applications, the dataset can be integrated into habitat evaluation models, including bioenergetic (e.g., Naman et al., 2019) and life cycle models (e.g., Beechie et al., 2023), to improve estimates of habitat capacity and population dynamics for river- and stream-rearing salmonids. Understanding prey availability dynamics is increasingly important, because rising water temperatures increase salmonid metabolic demands (Crozier et al., 2010). Flow regime transitions (i.e., snow or glacier dominated to rain dominated; Beechie et al., 2013), wildfire frequency and intensity (Hessburg et al., 2021), as well as plant community and phenology shifts (Cleland et al., 2007; Franklin et al., 2016) are all predicted to change with rising temperatures and are potential drivers of terrestrial and aquatic invertebrate prey quality and availability in lotic systems. These insights can ultimately inform restoration prioritization and design, helping managers consider food resource implications when evaluating restoration priorities and match habitat improvement to food supply. The data are released under the Creative Commons Attribution 4.0 International license and may be reused with attribution.

Alaska, Arizona, British Columbia, California, Col↗
USGS1990

Embryotoxicity and teratogenicity of environmental contaminants to bird eggs

In light of recent ecological disasters such as the Exxon Valdez oil spill of 1989, which has already claimed the lives of thousands of aquatic birds with the reproductive success of countless others at risk, there is a need to evaluate the embryotoxic potential of a continuously growing number of industrial and agricultural environmental contaminants that may come in direct contact with bird eggs. Since the Clean Air Act of 1970, the Environmental Protection Agency has issued regulations for only seven toxics, yet in 1987 alone industry released over two billion pounds of toxic substances into the air (Easterbrook 1989).

Book chapter↗
USGS1979

Fall foods of migrant common snipe in North Dakota

Studies of foods consumed by common snipe ( Capella gallinago ) during fall migration (Sperry 1940, Erickson 1941, Choate in Tuck 1972, Tuck 1972) have shown that diets vary among habitats. More recently, Fogarty and Arnold (1977) expressed the need for more detailed information on snipe food habits and more refined knowledge of the snipe's range and adaptability to various food situations. There is a paucity of information on snipe feeding ecology in the prairie pothole region of North America where unstable and unpredictable hydrological conditions affect abundance and availability of aquatic foods. The objectives of study were to (1) identify foods consumed by common snipe during fall migration in south-central North Dakota, and (2) describe changes in diet during years with different water regimes.

North Dakota↗
USGS2021

Emerging control strategies for integrated pest management of invasive carps

Invasive carps are ecologically and economically problematic fish species in many large river basins in the United States and pose a threat to aquatic ecosystems throughout much of North America. Four species of invasive carps: black carp ( Mylopharyngodon piceus ), grass carp ( Ctenopharyngodon idella ), silver carp ( Hypophthalmichthys molitrix ) and bighead carp ( Hypophthalmichthys nobilis ), are particularly concerning for native ecosystems because they occupy and disrupt a variety of food and habitat niches. In response, natural resource agencies are developing integrated pest management (IPM) plans to mitigate invasive carps. Control tools are one key component within a successful IPM program and have been a focal point for development by governmental agencies and academic researchers. For example, behavioural deterrents and barriers that block migratory pathways could limit carps range expansion into new areas, while efficient removal methods could suppress established carp populations. However, control tools are sometimes limited in practice due to uncertainty with deployment, efficacy and availability. This review provides an overview of several emerging modelling approaches and control technologies that could inform and support future invasive carp IPM programs.

Journal of Vertebrate Biology↗
USGS1989

Pentachlorophenol Hazards to Fish, Wildlife, and Invertebrates: A Synoptic Review

Pentachlorophenol (PCP) is now widely used as a wood preservative, and this has contributed to the detection of PCP residues in air, rain, groundwaters, surface waters, fish and aquatic invertebrates, and in human urine, blood, and milk of nursing mothers. This report briefly reviews the technical literature on ecological and toxicological aspects of PCP in the environment, with emphasis on fishery and wildlife resources. Subtopics include sources and uses, chemical properties, fate, background concentrations, lethal and sublethal effects, and current recommendations for resource protection

Contaminant Hazard Reviews↗
USGS2023

Appendix D: Synthesis element 1 (revised): Water temperature effects on fisheries and stream health in nontidal waters

A limited review of relevant scientific literature related to temperature sensitivities of fish species, stream health indicators, and any related geospatial information was conducted. Based on this review, we provide a syntheses of information related to nontidal waters in the Chesapeake Bay Rising stream temperatures will have a range of impacts on nontidal aquatic ecosystems. Cold headwaters and associated species like brook trout and sculpin are especially vulnerable to higher stream temperatures. Efforts could be taken to identify and protect high quality resilient cold headwater brook trout (Salvelinus fontinalis) habitat. More information on groundwater impacts on stream temperatures and ecologically relevant temperature thresholds for species of concern could help resource managers identify temperature resilient habitats and populations. A vulnerability assessment could be valuable to better understand the drivers and stressors of rising stream temperatures, their effects on aquatic resources, and the risk to fish and other aquatic species. Further research could help in developing and fully vetting a complete list of cold/cool water benthic macroinvertebrate taxa and freshwater mussel taxa that are vulnerable to temperature change in the Chesapeake watershed.

Report↗
USGS2010

Status and trends of selected resources in the Upper Mississippi River System

Like other large rivers, the Upper Mississippi River System (UMRS) serves a diversity of roles. The UMRS provides commercial and recreational fishing, floodplain agriculture, drinking water for many communities, an important bird migration pathway, a variety of recreational activities, and a navigation system that transports much of the country's agricultural exports. These multiple roles present significant management challenges. Regular assessment of the condition of the river is needed to improve management plans and evaluate their effectiveness. This report provides a summary of the recent status (mean and range of conditions) and trends (change in direction over time) for 24 indicators of the ecological condition of the Upper Mississippi and Illinois Rivers using data collected through the Long Term Resource Monitoring Program (LTRMP). The 24 indicators were grouped into seven categories: hydrology, sedimentation, water quality, land cover, aquatic vegetation, invertebrates, and fish. Most of the data used in the report were collected between about 1993 and 2004, although some older data were also used to compare to recent conditions.Historical observations and current LTRMP data clearly indicate that the UMRS has been changed by human activity in ways that have diminished the ecological health of the river. The data indicate that status and trends differ among regions, and we expect that regional responses to various ecological rehabilitation techniques will differ as well. The continuing role of the LTRMP will be to provide the data needed to assess changes in river conditions and to determine how those changes relate to management actions, natural variation, and the overall ecological integrity of the river system.

Long Term Resource Monitoring Program Technical Re↗