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At least 415 records · Page 23Linked to original sources
USGS2016

Establishing links between streamflow and ecological integrity in the Sudbury River (Northeastern U.S.)

With increased pressure from a growing human population, managers are challenged to understand how novel disturbances (e.g., climate change, increased water withdrawals, urbanization) may affect natural resources. The Sudbury River is a National Wild and Scenic River located in suburban Boston, Massachusetts (Northeastern US) with myriad impairments (e.g., mainstem impoundments, withdrawals, and urbanization) that is under increasing pressure from hydrologic alteration. We sampled fish, mussel, and macroinvertebrate assemblages in the Sudbury River and used species traits to investigate potential effects of past and future flow alteration on biota. Analysis of 33 years of stream gage data indicates continued hydrologic alteration of the Sudbury River, likely related to increased urbanization and water withdrawals over that time. These changes include a roughly 200% increase in rise rates of flows, an approximate 65% decrease in 1-day minimum flows, and a trend towards increasing high flow pulse counts. Biotic sampling in summer of 2014 demonstrated that the Sudbury River is now dominated by generalist species. Of five mussel species sampled, all are generalists in their habitat requirements. Though one mussel species of special concern was sampled, the most abundant species collected were the widespread Eastern elliptio (58%) and Eastern lampmussel (40%). We used the target fish community (TFC) model to assess the degree to which the fish assemblage deviated from that expected for a river with similar zoogeographic and physical features. Overall, the current community has a 22.7% similarity to the TFC. Of the four fluvial specialist species present in the TFC, only fallfish was sampled in our study. While the TFC showed that the historical assemblage was likely dominated by fluvial specialist and fluvial dependent species, the current assemblage is overwhelmingly dominated by macrohabitat generalists (90.6% of fishes sampled). These results are consistent with other studies that show shifts in assemblages from fluvial specialists to habitat generalists with hydrologic alteration. If the current trends continue, it is likely that biotic assemblages will experience increasing pressure from hydrologic alteration. While hydrologic alteration is likely impacting biotic assemblages in the Sudbury River, other factors such as high temperatures, low dissolved oxygen, high nutrients, low availability of high-quality habitat, and poor habitat connectivity may also be negatively impacting biotic assemblages. Comparisons to other rivers and a complete longitudinal habitat survey could help to identify availability of unique habitats and representativeness of this study. While this study suggests impacts of flow on biota, future studies with quantitative, habitat-specific sampling during different flow levels could help to directly identify links between hydrologic alteration and biotic impairment in the Sudbury River.

Massachussetts↗
USGS2016

Estimating black bear density in New Mexico using noninvasive genetic sampling coupled with spatially explicit capture-recapture methods

During the 2004–2005 to 2015–2016 hunting seasons, the New Mexico Department of Game and Fish (NMDGF) estimated black bear abundance (Ursus americanus) across the state by coupling density estimates with the distribution of primary habitat generated by Costello et al. (2001). These estimates have been used to set harvest limits. For example, a density of 17 bears/100 km2 for the Sangre de Cristo and Sacramento Mountains and 13.2 bears/100 km2 for the Sandia Mountains were used to set harvest levels. The advancement and widespread acceptance of non-invasive sampling and mark-recapture methods, prompted the NMDGF to collaborate with the New Mexico Cooperative Fish and Wildlife Research Unit and New Mexico State University to update their density estimates for black bear populations in select mountain ranges across the state. We established 5 study areas in 3 mountain ranges: the northern (NSC; sampled in 2012) and southern Sangre de Cristo Mountains (SSC; sampled in 2013), the Sandia Mountains (Sandias; sampled in 2014), and the northern (NSacs) and southern Sacramento Mountains (SSacs; both sampled in 2014). We collected hair samples from black bears using two concurrent non-invasive sampling methods, hair traps and bear rubs. We used a gender marker and a suite of microsatellite loci to determine the individual identification of hair samples that were suitable for genetic analysis. We used these data to generate mark-recapture encounter histories for each bear and estimated density in a spatially explicit capture-recapture framework (SECR). We constructed a suite of SECR candidate models using sex, elevation, land cover type, and time to model heterogeneity in detection probability and the spatial scale over which detection probability declines. We used Akaike’s Information Criterion corrected for small sample size (AICc) to rank and select the most supported model from which we estimated density. We set 554 hair traps, 117 bear rubs and collected 4,083 hair samples. We identified 725 (367 M, 358 F) individuals; the sex ratio for each study area was approximately equal. Our density estimates varied within and among mountain ranges with an estimated density of 21.86 bears/100 km2 (95% CI: 17.83 – 26.80) for the NSC, 19.74 bears/100 km2 (95% CI: 13.77 – 28.30) in the SSC, 25.75 bears/100 km2 (95% CI: 13.22 – 50.14) in the Sandias, 21.86 bears/100 km2 (95% CI: 17.83 – 26.80) in the NSacs, and 16.55 bears/100 km2 (95% CI: 11.64 – 23.53) in the SSacs. Overall detection probability for hair traps and bear rubs, combined, was low across all study areas and ranged from 0.00001 to 0.02. We speculate that detection probabilities were affected by failure of some hair samples to produce a complete genotype due to UV degradation of DNA, and our inability to set and check some sampling devices due to wildfires in the SSC. Ultraviolet radiation levels are particularly high in New Mexico compared to other states where NGS methods have been used because New Mexico receives substantial amounts of sunshine, is relatively high in elevation (1,200 m – 4,000 m), and is at a lower latitude. Despite these sampling difficulties, we were able to produce density estimates for New Mexico black bear populations with levels of precision comparable to estimated black bear densities made elsewhere in the U.S. Our ability to generate reliable black bear density estimates for 3 New Mexico mountain ranges is attributable to our use of a statistically robust study design and analytical method. There are multiple factors that need to be considered when developing future SECR-based density estimation projects. First, the spatial extent of the population of interest and the smallest average home range size must be determined; these will dictate size of the trapping array and spacing necessary between hair traps. The number of technicians needed and access to the study areas will also influence configuration of the trapping array. We believe shorter sampling occasions could be implemented to reduce degradation of DNA due to UV radiation; this might help increase amplification rates and thereby increase both the number of unique individuals identified and the number of recaptures, improving the precision of the density estimates. A pilot study may be useful to determine the length of time hair samples can remain in the field prior to collection. In addition, researchers may consider setting hair traps and bear rubs in more shaded areas (e.g., north facing slopes) to help reduce exposure to UV radiation. To reduce the sampling interval it will be necessary to either hire more field personnel or decrease the number of hair traps per sampling session. Both of these will enhance detection of long-range movement events by individual bears, increase initial capture and recapture rates, and improve precision of the parameter estimates. We recognize that all studies are constrained by limited resources, however, increasing field personnel would also allow a larger study area to be sampled or enable higher trap density. In conclusion, we estimated the density of black bears in 5 study areas within 3 mountains ranges of New Mexico. Our estimates will aid the NMDGF in setting sustainable harvest limits. Along with estimates of density, information on additional demographic rates (e.g., survival rates and reproduction) and the potential effects that climate change and future land use may have on the demography of black bears may also help inform management of black bears in New Mexico, and may be considered as future areas for research.

New Mexico↗
USGS2016

Evaluation and refinement of Guadalupe Bass conservation strategies to support adaptive management

Burbot Lota lota is the sole freshwater representative of the cod-like fishes and supports subsistence, commercial, and recreational fisheries worldwide above approximately 40° N. It is a difficult species to manage effectively due to its preference for deep-water habitats and spawning activity under the ice in winter. Like other gadiform fishes, Burbot use acoustic signaling as part of their mating system, and while the acoustic repertoire of the species has been characterized under artificial conditions (i.e., net pen suspended under ice in a natural lake), there has been no work to determine whether the species is as vocal in natural spawning aggregations. Our objective was to assess the feasibility of collecting and using acoustic data to characterize the spawning activity and locations of Burbot under field conditions. We recorded audio and video of Burbot spawning aggregations through holes drilled into the ice at known spawning grounds at Moyie Lake in British Columbia, Canada. Acoustic recordings (call counts and audiograms) were analyzed using Raven Pro v 1. 4 software. Acoustic behavior was also related to video data to determine how acoustic activity correlated to any observed spawning behavior. In general, wild Burbot spawning in Moyie Lake did not vocalize as frequently as counterparts spawning under artificial conditions. Further, Burbot vocalizations were not recorded in conjunction with spawning activity. While it may be feasible to use passive acoustic monitoring to locate Burbot spawning grounds and identify periods of activity, it does not seem to hold much promise for locating and quantifying spawning activity in real time.

Cooperator Science Series↗
USGS2016

Prioritizing landscapes for longleaf pine conservation

We developed a spatially explicit model and map, as a decision support tool (DST), to aid conservation agencies creating or maintaining open pine ecosystems. The tool identified areas that are likely to provide the greatest benefit to focal bird populations based on a comprehensive landscape analysis. We used NLCD 2011, SSURGO, and SEGAP data to map the density of desired resources for open pine ecosystems and six focal species of birds and 2 reptiles within the historic range of longleaf pine east of the Mississippi River. Binary rasters were created of sites with desired characteristics such as land form, hydrology, land use and land cover, soils, potential habitat for focal species, and putative source populations of focal species. Each raster was smoothed using a kernel density estimator. Rasters were combined and scaled to map priority locations for the management of each focal species. Species’ rasters were combined and scaled to provide maps of overall priority for birds and for birds and reptiles. The spatial data can be used to identify high priority areas for conservation or to compare areas under consideration for maintenance or creation of open pine ecosystems.

Cooperator Science Series↗
USGS2014

Restoration of Rio Grande cutthroat trout Oncorhynchus clarkii virginalis to the Mescalero Apache Reservation

Rio Grande Cutthroat trout Oncorhynchus clarkii virginalis (RGCT) represents the most southern subspecies of cutthroat trout, endemic to Rio Grande, Canadian, and Pecos basins of New Mexico and southern Colorado. The subspecies currently occupies less than 12% of its historic range. The Mescalero Apache Tribe has partnered with U.S. Geological Survey-New Mexico Cooperative Fish and Wildlife Research Unit, New Mexico State University, U.S. Fish and Wildlife Service, and New Mexico Department of Game and Fish to meet mutually shared goals of restoring and maintaining a Pecos strain of RGCT to Tribal lands. The goal of this project was to assess the suitability of the Rio Ruidoso within the Mescalero Apache Reservation to support a self-sustaining RGCT population by conducting a systematic and comprehensive survey. We conducted three surveys (fall 2010, spring 2011 and 2012) to characterize water quality, macroinvertebrate assemblages, fish communities, and physical habitat (stream size, channel gradient, channel substrate, habitat complexity, riparian vegetation cover and structure, migration barriers to movement). Seven-100 m reaches throughout three major tributaries of the Rio Ruidoso within the Tribal lands were sampled during baseflow conditions October 2010, May 2011, and June 2012. Despite the onset of severe drought in 2011, water quality, physical habitat, and fish populations revealed that the Rio Ruidoso and its three tributaries would most likely support a self-sustaining RGCT population. Pools were abundant (mean, 8.9 pools/100 m), instream woody debris was present (range, 3.8-45.6 pieces/100 m), and instream dataloggers revealed daily maximum stream temperatures rarely exceeded criteria established in New Mexico for coldwater fishes, however, presence of frazil and anchor ice may limit fish distribution in the winter. Aquatic macroinvertebrate samples revealed a community of benthic invertebrates reflective of high quality cool to cold water. Overall densities of brown trout, rainbow trout and brook trout were high (overall mean, 0.23 fish/m2) and in relatively good condition (range of mean relative weight, 84-117). Should the Mescalero Apache Tribe decide to introduce RGCT, prior to chemical treatment, a barrier placed below the confluence of Middle and South forks of the Rio Ruidoso would create approximately 12 km of perennial flow and help protect against invasion of non-native fishes. The North Fork of the Rio Ruidoso is not a good candidate for reintroduction because of easy access by the public to reintroduce non-native fishes into the watershed. Lastly, an annual, long-term monitoring program of RGCT would help document that there was no subsequent incursion of non-native fishes.

Cooperator Science Series↗
USGS2017

Using population models to evaluate management alternatives for Gulf Striped Bass

Interstate management of Gulf Striped Bass Morone saxatilis has involved a thirty-year cooperative effort involving Federal and State agencies in Georgia, Florida and Alabama (Apalachicola-Chattahoochee-Flint Gulf Striped Bass Technical Committee). The Committee has recently focused on developing an adaptive framework for conserving and restoring Gulf Striped Bass in the Apalachicola, Chattahoochee, and Flint River (ACF) system. To evaluate the consequences and tradeoffs among management activities, population models were used to inform management decisions. Stochastic matrix models were constructed with varying recruitment and stocking rates to simulate effects of management alternatives on Gulf Striped Bass population objectives. An age-classified matrix model that incorporated stock fecundity estimates and survival estimates was used to project population growth rate. In addition, combinations of management alternatives (stocking rates, Hydrilla control, harvest regulations) were evaluated with respect to how they influenced Gulf Striped Bass population growth. Annual survival and mortality rates were estimated from catch-curve analysis, while fecundity was estimated and predicted using a linear least squares regression analysis of fish length versus egg number from hatchery brood fish data. Stocking rates and stocked-fish survival rates were estimated from census data. Results indicated that management alternatives could be an effective approach to increasing the Gulf Striped Bass population. Population abundance was greatest under maximum stocking effort, maximum Hydrilla control and a moratorium. Conversely, population abundance was lowest under no stocking, no Hydrilla control and the current harvest regulation. Stocking rates proved to be an effective management strategy; however, low survival estimates of stocked fish (1%) limited the potential for population growth. Hydrilla control increased the survival rate of stocked fish and provided higher estimates of population abundances than maximizing the stocking rate. A change in the current harvest regulation (50% harvest regulation) was not an effective alternative to increasing the Gulf Striped Bass population size. Applying a moratorium to the Gulf Striped Bass fishery increased survival rates from 50% to 74% and resulted in the largest population growth of the individual management alternatives. These results could be used by the Committee to inform management decisions for other populations of Striped Bass in the Gulf Region.

Cooperator Science Series↗
USGS2017

Variation and plasticity and their interaction with urbanization in Guadalupe Bass populations on and off the Edwards Plateau

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: Assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass. Evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales. Describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies. Key findings of this study were: The similarity in response of growth rates to streamflow throughout the Colorado Basin suggests phenotypic plasticity in this trait rather than population-specific adaptations. Reductions in streamflows in the Colorado River Basin, whether due to increased frequency of drought or increased anthropogenic water withdrawal, will likely result in lower Guadalupe Bass growth rates with the potential to impact the structure of populations. Growth and recruitment showed a positive correlation with increased baseflows and mean monthly flows; however, continued assessment is necessary to determine a true relationship. We documented morphological divergence among Guadalupe Bass populations in response to spatial and temporal environmental variation. These ecomorphological differences among populations provide insight into the ability of Guadalupe Bass to respond to the differing in-stream habitat and flow conditions between small ‘typical’ tributary systems and the mainstem Colorado River. Morphological variation may be a population-level adaptation that potentially needs to be taken into consideration when choosing broodstock to maximize stocking success within a system. Understanding the morphological differences between Guadalupe Bass populations in response to local conditions could improve the success of restoration and supplemental stocking programs, especially in the ever-changing landscape of central Texas. We established a baseline for understanding the morphological response of Guadalupe Bass to increased population growth and the threats posed by increased water withdrawals and impervious surface. The mainstem population of Guadalupe Bass was generally more mobile, and more responsive to changes in streamflow, than tributary populations. The observed differences could influence the response of Guadalupe Bass populations to conservation and management actions, such as habitat restoration efforts. Continued monitoring of recruitment and angler exploitation may be beneficial to identify any changes that could negatively impact the population. Conservation initiatives solely focused on physical instream or riparian habitat are unlikely to be as beneficial to Guadalupe Bass as those focused on restoring or maintaining adequate streamflow

Cooperator Science Series↗
USGS2017

What can volunteer angler tagging data tell us about the status of the Giant Trevally (ulua aukea) Caranx ignobilis fishery in Hawaii: revisiting data collected during Hawaii’s Ulua and Papio Tagging Project 2000-2016

Giant Trevally (ulua aukea) Caranx ignobilis is one of the most highly prized and frequently targeted nearshore species. However, there is very little information on its current status in Hawaiian waters. This study uses mark-recapture data collected as part of recreational angler tagging program conducted by the Hawaii Department of Land and Natural Resources-Division of Aquatic Resources during 2000-2012. Mark-recapture data were used to estimate von Bertalanffy growth curve parameters and survivorship. Growth curves generated from the markrecapture data suggested that Giant Trevally from the main Hawaiian Islands may be growing faster and reach a smaller maximum size than individuals in the Northwest Hawaiian Islands, but there are a number of issues rendering this conclusion uncertain. The survivorship of Giant Trevally was positively associated with age, in part due to ontogenetic habitat shifts that result in older fish moving to offshore habitats where they are less vulnerable to anglers. When compared to stock assessments performed using commercial landings data and fisheries-independent visual surveys, the mark-recapture data produced similar estimates for the average length of exploited fish, a metric highly negatively correlated to fishing mortality. These results emphasize the need for additional information on the biology of Giant Trevally in Hawaiian waters and suggest that the data collected from this recreational angler tagging program may be useful to generate reliable estimates of mortality for stock assessment purposes.

Hawaii↗
USGS2014

Setting objectives for managing Key deer

The U.S. Fish and Wildlife Service (FWS) is responsible for the protection and management of Key deer ( Odocoileus virginianus clavium ) because the species is listed as Endangered under the Endangered Species Act (ESA). The purpose of the ESA is to protect and recover imperiled species and the ecosystems upon which they depend. There are a host of actions that could possibly be undertaken to recover the Key deer population, but without a clearly defined problem and stated objectives it can be difficult to compare and evaluate alternative actions. In addition, management goals and the acceptability of alternative management actions are inherently linked to stakeholders, who should be engaged throughout the process of developing a decision framework. The purpose of this project was to engage a representative group of stakeholders to develop a problem statement that captured the management problem the FWS must address with Key deer and identify objectives that, if met, would help solve the problem. In addition, the objectives were organized in a hierarchical manner (i.e., an objectives network) to show how they are linked, and measurable attributes were identified for each objective. We organized a group of people who represented stakeholders interested in and potentially affected by the management of Key deer. These stakeholders included individuals who represented local, state, and federal governments, non-governmental organizations, the general public, and local businesses. This stakeholder group met five full days over the course of an eight-week period to identify objectives that would address the following problem: “As recovery and removal from the Endangered Species list is the purpose of the Endangered Species Act, the U.S. Fish and Wildlife Service needs a management approach that will ensure a sustainable, viable, and healthy Key deer population. Urbanization has affected the behavior and population dynamics of the Key deer and the amount and characteristics of available habitat. The identified management approach must balance relevant social and economic concerns, Federal (e.g., Endangered Species Act, Wilderness Act, Refuge Act) and state regulations, and the conservation of biodiversity (e.g., Endangered/Threatened species, native habitat) in the Lower Keys.” The stakeholder group identified four fundamental objectives that are essential to addressing the problem: 1) Maximize a sustainable, viable, and healthy Key deer population, 2) Maximize value of Key deer to the People, 3) Minimize deer-related negative impacts to biodiversity, and 4) Minimize costs. In addition, the group identified 25 additional objectives that, if met, would help meet the fundamental objectives. The objectives network and measurable attributes identified by the stakeholder group can be used in the future to develop and evaluate potential management alternatives.

Cooperator Science Series↗
USGS2017

Experimental stocking of sport fish in the regulated Tallapoosa River to determine critical periods for recruitment

The stocking of fish in riverine systems to re-establish stocks for conservation and management appears limited to a few species and often occurs in reaches impacted by impoundments. Stocking of sport fish species such as centrarchids and ictalurids is often restricted to lentic environments, although stocking in lotic environments is feasible with variable success. R. L. Harris Dam on the Tallapoosa River, Alabama is the newest and uppermost dam facility on the river (operating since 1983); flows from the dam have been managed adaptively for multiple stakeholder objectives since 2005. One of the stakeholders’ primary objectives is to provide quality sport fisheries in the Tallapoosa River in the managed area below the dam. Historically, ictalurids and cyprinids dominated the river above Lake Martin. However, investigations after Harris Dam closed have detected a shift in community structure to domination by centrarchids. Flow management (termed the Green Plan) has been occurring since March 2005; however, sport fish populations as measured by recruitment of age-1 sport fishes below the dam has not responded adequately to flow management. The objectives of this research were to: (1) determine if stocking Channel Catfish Ictalurus punctatus and Redbreast Sunfish Lepomis auritus influences year-class strength; (2) estimate vital rates (i.e. growth, mortality, and recruitment) for Channel Catfish populations for use in an age-based population model; and (3) identify age-specific survivorship and fecundity rates contributing to Channel Catfish population stability. No marked Redbreast Sunfish were recaptured due to poor marking efficacy and therefore no further analysis was conducted with this species. Stocked Channel Catfish, similarly, were not recaptured, leaving reasons for non-recapture unknown. Matrix models exploring vital rates illustrated survival to age-1 for Channel Catfish to be less than 0.03% and that survival through ages 2 – 4 had equal contribution to overall population growth, indicating recruitment limitation may impact population size and stability. Results from this study indicate stock enhancement of sport fish populations below Harris Dam may not be an effective management technique at this time.

Alabama↗
USGS2018

Incorporating an approach to aid river and reservoir fisheries in an altered landscape

Reservoir construction for human-use services alters connected riverine flow patterns and influences fish production. We sampled two pelagic fishes from two rivers and two reservoirs and related seasonal and annual hydrology patterns to the recruitment and growth of each species. River and reservoir populations of Freshwater Drum Aplodinotus grunniens reached similar ages (32 and 31, respectively). Likewise, longevity of Gizzard Shad Dorosoma cepedianum between the two systems was also similar (7 and 8 years, respectively). However, both species grew larger in the rivers compared to reservoir residents. Recruitment of Freshwater Drum in reservoirs was negatively related to water retention time (r2=0.59) suggesting moving water through the reservoir was beneficial. Riverine recruitment of Freshwater Drum populations was negatively related to the annual number of flow reversals and positively related to prespawn discharge (r2 = 0.33). Unlike Freshwater Drum, there was no relationship between flow metrics and Gizzard Shad recruitment in reservoirs. However, recruitment of riverine Gizzard Shad was positively related to high flow pulses during the prespawn and spawning seasons (r2 = 0.48). The growth of both species in reservoirs was positively related to the number of days each year that water levels were above the conservation pool. Growth of Freshwater Drum was also negatively related to minimum reservoir summer water levels (r2 = 0.84). Growth of both Freshwater Drum and Gizzard Shad occupying lotic systems was positively related to May (r2 = 0.86) and July discharge (r2 = 0.84), respectively. In general, growth and recruitment of the reservoir populations was more related to annual water patterns, whereas riverine fishes responded more to seasonal flow patterns. Results of this study provide important information on the relationship between hydrology and pelagic fish production in both rivers and reservoirs. This information is useful if agencies are interested in developing holistic river-reservoir water-allocation plans.

Cooperator Science Series↗
USGS2019

Guadalupe Bass flow-ecology relationships; with emphasis on the impact of flow on recruitment

Guadalupe Bass Micropterus treculii is an economically and ecologically important black bass species endemic to the Edwards Plateau ecoregion and the lower portions of the Colorado River in central Texas. It is considered a fluvial specialist and as such, there are concerns that the increasing demands being placed upon the water resources of central Texas by growing human populations have the potential to negatively impact Guadalupe Bass populations. Therefore, this study assessed the relationship between Guadalupe Bass growth, feeding ecology, and streamflow. Sagittal otoliths were removed from Guadalupe Bass collected from throughout their range during 2015-2017 and used to estimate the age and back-calculate the growth trajectory of each individual. Additionally, young-of-year (YOY) Guadalupe Bass were collected every 10-14 days from two second-order streams, the North Llano River and South Llano River, in the Colorado Basin on the Edwards Plateau. Stomach contents of these individuals were identified and the effect of streamflow on the occurrence of the taxa comprising the stomach contents assessed. Guadalupe Bass growth was greater in the Colorado and Guadalupe River basins, independent of stream order, and tended to increase with increasing stream order within a basin. Growth was higher in higher stream orders and during years with stable and lower spring and summer monthly median flows, lower minimum and maximum flows, slower rise and fall rates, and higher baseflows. Growth was not influenced by years with higher monthly median flows in winter. These results would seem to contradict previous research, but more likely represent a fuller picture of how Guadalupe Bass respond to flow conditions. The disagreement between the current study and past studies seem to be attributable, at least in part, to the fact that previous studies were conducted during a period of extensive drought, while the current study was conducted during relatively wet conditions. Taken together with previous studies, the current study suggests that Guadalupe Bass growth is sensitive to flow conditions and is lower in years with flow conditions that fall outside a basin- and stream order-specific optimal range for the species. A total of 21 unique taxonomic groups were recovered from the stomachs of YOY Guadalupe Bass collected from the North Llano River and South Llano River. Aquatic insects, especially larval mayflies (Ephemeroptera), damselflies (Odanata: Zygoptera), and caddisflies (Trichoptera), were the most frequently encountered taxa. While there was no difference between the two rivers in stomach content composition, there was a strong longitudinal gradient in both systems with aquatic insects predominating at upstream sample sites and fishes being more common at downstream sites. Stream discharge during the 24 hours prior to collection did not have any influence on the probability of a taxa being found in Guadalupe Bass stomachs. The results of this study support efforts to manage Guadalupe Bass populations at a sub-watershed scale and suggests that populations occupying the same stream order within a basin are likely to have similar responses to annual flow conditions. In addition, these results indicate that the lower Colorado River population may inhabit a unique set of conditions that has supported the development of a trophy Guadalupe Bass fishery. Further, this study highlights the need to incorporate a sufficient range of annual flow conditions to ensure that the influence of stream flow on fish growth is adequately assessed. While interannual variation in growth rates seem to be capable of serving as a proxy for recruitment and year-class strength, long-term monitoring of recruitment paired with assessment of growth is necessary to further clarify the relationship between population density, flow regime, recruitment and growth and allow the construction of predictive models.

Texas↗
USGS2018

Assessing wild juvenile trout ecology in the lower Mountain Fork

Reservoir tailwaters can be valuable fisheries for Rainbow Trout ( Oncorhynchus mykiss ), which is commonly stocked as mitigation for the altered habitat because it performs well as a put-and-take species in these thermally depressed systems. These fisheries are usually sustained by stocking due to flow fluctuations and lack of suitable spawning habitat that may limit natural reproduction. The Lower Mountain Fork River (LMFR) below Broken Bow Dam in southeastern Oklahoma is one of two year-round trout fisheries in the state and wild, juvenile Rainbow Trout were documented beginning in 2006, prompting speculation about the potential for a self-sustaining population. To determine this potential, we searched several sites over two years throughout the LMFR for wild, juvenile Rainbow Trout to estimate several parameters related to their population status (e.g., age, growth, time of spawning and hatching, and prey use). We also assessed the availability of macroinvertebrate prey to determine how food resources may affect trout sustainability. We found wild, juvenile Rainbow Trout each year, but only at sites within the first 4.5 km of the 19-km tailwater. Juvenile trout were the result of spawning that took place from late January through mid-April. Growth and body condition were variable between years, but similar to other systems. Weekly survival estimates using catch curves were low (<80%), suggesting limited potential for recruitment; however, declining catchability of larger juvenile fish likely biased these estimates. Wild, juvenile Rainbow Trout ate a variety of food items, but selected for Amphipoda and Diplostraca and against Trichoptera. Overlap in diet with adult Rainbow Trout was low (Bray-Curtis dissimilarity = 0.70). Macroinvertebrate prey resources available to trout varied among management zones, being most abundant in Zone 1 and Zone 3. Potential for a wild fishery may exist in the upper portion of the LMFR but additional research on recruitment to adulthood would be required to provide a more definitive answer.

Oklahoma↗
USGS2018

Brook Floater rapid assessment monitoring protocol

The Brook Floater ( Alasmidonta varicosa ) is a small (<100 mm), stream dwelling freshwater mussel (Family: Unionidae) from Atlantic Slope drainages in the eastern U.S. (Nedeau 2008). Brook Floater have dramatically contracted in distribution over recent decades, and there is limited evidence of recruitment in most locations, despite minimal effort to document population status (Wicklow et al., 2017). Brook Floater is listed as a Species of Greatest Conservation Need (SGCN) throughout its range in the United States (state-listed as imperiled or critically imperiled in all 15 states), has been extirpated from two states (Rhode Island and Delaware) and was recently petitioned for Federal listing in 2011 (Wicklow et al. 2017). Currently, there is a U.S. Fish and Wildlife (USFWS) Species Status Assessment underway to determine if federal listing under the Endangered Species Act is warranted. Brook Floater is also listed as a species of special concern in Canada, the northern extent of its range. In 2016, a state wildlife grant was awarded to develop range-wide conservation initiatives and strategies, including the development of rapid assessment and long-term monitoring techniques, in addition to developing conservation strategies to improve its probability of persistence in the future. The purpose of this protocol is to describe and facilitate a rapid approach to estimating Brook Floater occupancy to better understand the factors that influence Brook Floater distribution. Occupancy estimation approaches allow for estimation of species occupancy (; percent area occupied) within some scale of interest (for our purposes, the watershed), while simultaneously estimating species detection probability (p; the probability of finding an organism, if present). Occupancy estimation has been used with many wildlife taxa and is essential for understanding the presence or absence of wildlife in a particular area while accounting for imperfect detection (i.e., p<1; MacKenzie et al. 2004, Shea et al. 2013, Wisniewski et al. 2013, Pandolfo et al. 2016, MacKenzie 2016). This approach does not rely on existing information about species presence or absence to select sites. Occupancy estimation operates on a robust probabilistic framework of randomly selected sites to infer what proportion of sites are occupied. Occupancy estimation also incorporates imperfect detection (p <1; i.e., animals are cryptic and elusive; observers have varying experience searching, etc.; MacKenzie et al. 2003). For example, two mussel species that occupy a site might have two very different detection histories, as determined by revisiting a site and using the same methods on repeated visits to find both species. See hypothetical results here: Visits 1 2 3 4 5 Mussel species A 1 1 1 0 1 Mussel species B 0 0 0 1 0 (1 = detected, 0=not detected) Both of these mussel species occupy this site, yet Mussel A was detected in 4 out of 5 visits (high p) and Mussel B was detected in 1 out of 5 visits (low p) with the methods used to survey this site. Covariates may explain differences in detection between species or visits. Organisms may be: 1) present and not observed, 2) present and unavailable for capture (i.e., buried in sediment), or 3) not present at the site. Occupancy estimation uses repeated visits of randomly selected sites to build species detection histories (i.e., 1, 0, 1) to simultaneously estimate occupancy () and p. Typically, repeated visits are discrete sampling events and are more time consuming because each site requires >3 separate visits. In our rapid assessment protocol, we use multiple independent observers searching longitudinal lanes to estimate detection in a single site visit as opposed to multiple discrete visits. Below are hypothetical results of occupancy by observer: Independent Observers 1 2 3 4 5 Mussel species A 1 1 0 1 1 Mussel species B 1 0 0 1 0 (1 = detected, 0=not detected) Objectives: The objectives of this rapid assessment survey approach are to guide collection of data that can be used to: A. Estimate the occupancy of Brook Floater within watersheds. B. Estimate the effects of reach- and watershed-scale habitat features on Brook Floater occurrence. C. Understand how survey covariates (e.g., surveyor experience) influence detection of Brook Floater. While this protocol explicitly targets collection of Brook Floater, it is likely that the methods can be adapted for occupancy surveys of other stream-dwelling freshwater mussel species.

Cooperator Science Series↗
USGS2023

The Factors Affecting Female Black Bear Harvest Rates in Pennsylvania

Pennsylvania’s black bear ( Ursus americanus ) population increased in abundance and distribution during the latter third of the 20th century, leading to an increase in human-bear conflicts. Increases in harvest opportunities from 2002–2018 aimed to stabilize black bear population growth but did not substantially increase harvest, and annual harvest was often below the desired goal of 20% removal. Consequently, additional changes to Pennsylvania’s black bear hunting seasons occurred from 2019–2021, including starting harvest earlier, expanding the length of seasons, and adding additional seasons (i.e., a muzzleloader and special rifle season). Understanding how earlier harvest seasons and new methods of take (i.e., muzzleloader) influence female black bear harvest vulnerability is important to informing harvest management. We trapped and GPS-collared adult female bears in the Sproul State Forest in northcentral Pennsylvania from 2019–2021 to determine home range sizes, patterns of resource selection, and sources of mortality during fall harvest seasons. We assessed annual variability in relative abundance of fall hard mast. We evaluated temporal and spatial variation in hunter activity with road-side surveys and remote camera traps, respectively. We estimated fall and weekly home range size with utilization distributions through an autocorrelated kernel density estimation and evaluated the influence of predictors hypothesized to influence third-order resource selection using generalized linear mixed models. We investigated factors hypothesized to influence female black bear survival during hunting seasons with known-fate models. Mean fall home range size was 248.7 km 2 (range = 6.1–2636.1 km 2 ). Home range sizes varied by year and were generally smaller during archery harvest season than other periods. Patterns of weekly resource selection indicated bears selected steeper slopes and higher elevations outside of harvest seasons but shifted to less-steep areas in the week before harvest and the first week of harvest, and to lower elevations during harvest. Bears selected for areas containing oak ( Quercus spp.) trees throughout the fall. Survival was lower in older age bears, greater relative mast abundance conditions, steeper slopes, and areas of greater hunter space use during the general firearms season. Survival was higher in areas of greater hunter space use during archery season. Harvest rate of adult female bears was 0.345 in 2019, 0.321 in 2020, and 0.150 in 2021, and averaged 0.272 across all three years. The probability of an adult female black bear surviving all harvest seasons each year was 0.611 (SE = 0.086, 95% CI = 0.436, 0.761). The high harvest rate and low predicted survival may lead to population reduction.

Pennsylvania↗
USGS2023

Effects of sucker gigging on fish populations in Oklahoma scenic rivers

Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is needed to determine safe levels of sucker harvest that ensure sustainability of sucker gigging and protect overall ecosystem function. The objectives of this study were to: 1) determine the spatial distribution of common sucker species during spawning season (when sucker gigging is most effective), 2) determine the population size, age structure , and total mortality rate for common sucker species, and 3) model the effects of different harvest rates on sucker populations to determine the harvest rate at which growth overfishing and recruitment overfishing begin. Suckers were sampled using electrofishing, modified fyke netting, gillnetting, hoop netting, and seining and marked with passive integrated transponder (PIT) tags to provide information about population size, demographics, and coarse-scale movement patterns. A subset of fish sampled using the above gears and additional fish collected during gigging tournaments in 2017-2019 and 2021-2022 (no tournament was held in 2020) were used for age analyses. Tournament data collected prior to the initiation of this project were obtained from the state agency. Data from gigging tournaments indicated Golden Redhorse Moxostoma erythrurum, Black Redhorse M. duquesnei, White Sucker Catostomus commersonii, and Spotted Sucker Minytrema melanops were vulnerable to gigging harvest. Selection by giggers for larger individuals was apparent for all species except Golden Redhorse in 2019. Spotted Suckers constituted most fish harvested, but the proportion of each species harvested still varied among years. A total of 943 fish were aged from samples obtained from 2017 to 2022 and results from subsequent analyses indicated a high degree of variation in growth rates within and among species. Over 4,700 suckers were tagged with PIT tags and over 400 recaptures of these tagged fish were made since autumn 2018. Preliminary analyses indicate survival was consistent across samples and species, and detection rates varied by sampling event (3-month periods). Our most likely top multistrata model suggested that a large portion of fish within the upper Spavinaw, lower Spavinaw, and reservoir sections remain in these locations year-round (means: 0.46 – 0.67). Despite this, transition probabilities are still high for movement from upper Spavinaw to lower Spavinaw (mean: 0.32) and from lower Spavinaw to upper Spavinaw (mean: 0.38). Likewise, transition probabilities were high for movement from lower Spavinaw to the reservoir (mean: 0.15) and from the reservoir to lower Spavinaw (mean: 0.32). Transition probabilities between upper Spavinaw and the reservoir were low in both directions (means < 0.01). Population sizes, growth trajectories and length-weight relationships varied among species. Preliminary harvest models suggest species-specific regulation may be scientifically appropriate; however, it may be difficult for giggers to identify species while gigging. Based on our model results, there appears to be little risk of recruitment or growth overfishing for any species at current exploitation levels.

Oklahoma↗
USGS2023

Updated decision analysis to inform multi-species salmonine management in Lake Michigan

The recreational fishery for salmonine species in Lake Michigan (lake trout, Chinook salmon, coho salmon, steelhead, and brown trout) is largely maintained through stocking. Decisions about how many of each species to stock require an understanding of how to maintain a sustainable balance of predators (salmonine species) to prey (alewife) in the lake. The current models used to make these decisions can estimate the ratio of Chinook salmon to alewife in the lake. However, the Lake Michigan Committee’s new stocking strategy aims to incorporate the other salmonine species into this predator-prey ratio. We used structured decision making to evaluate potential stocking strategies. We worked with fishery stakeholders and members of the Lake Michigan Committee, conducted participatory modeling to forecast outcomes of stocking scenarios using updated information on fish movement and feeding, and evaluated the risk of these stocking strategies. Most of the stocking practices we evaluated resulted in a high risk of large declines in alewife abundance, negatively affecting future salmon fisheries. The forecasts were substantially more pessimistic than those resulting from a similar analysis conducted a decade earlier, apparently due to more recent alewife assessments indicating lower alewife productivity (recruits per spawner). Alewife recruitment dynamics is an area of substantial uncertainty, with apparently large consequences for management; decision makers on Lake Michigan would benefit from greater understanding of alewife recruitment dynamics to reduce this uncertainty when accounting for risks.

Lake Michigan↗