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USGS1984

Avian models for toxicity testing

The use of birds as test models in experimental and environmental toxicology as related to health effects is reviewed, and an overview of descriptive tests routinely used in wildlife toxicology is provided. Toxicologic research on birds may be applicable to human health both directly by their use as models for mechanistic and descriptive studies and indirectly as monitors of environmental quality. Topics include the use of birds as models for study of teratogenesis and embryotoxicity, neurotoxicity, behavior, trends of environmental pollution, and for use in predictive wildlife toxicology. Uses of domestic and wild-captured birds are discussed.

Journal of the American College of Toxicology↗

USGS2006

Prevalence of Microsporidia, Cryptosporidium spp., and Giardia spp. in beavers (Castor canadensis) in Massachusetts

Feces from 62 beavers (Castor canadensis) in Massachusetts were examined by fluorescence microscopy (IFA) and polymerase chain reaction (PCR) for Microsporidia species, Cryptosporidium spp., and Giardia spp. between January 2002 and December 2004. PCR-positive specimens were further examined by gene sequencing. Protist parasites were detected in 6.4% of the beavers. All were subadults and kits. Microsporidia species were not detected. Giardia spp. was detected by IFA from four beavers; Cryptosporidium spp. was also detected by IFA from two of these beavers. However, gene sequence data for the ssrRNA gene from these two Cryptosporidium spp.-positive beavers were inconclusive in identifying the species. Nucleotide sequences of the TPI, ssrRNA, and ??-giardin genes for Giardia spp. (deposited in GenBank) indicated that the four beavers were excreting Giardia duodenalis Assemblage B, the zoonotic genotype representing a potential source of waterborne Giardia spp. cysts. Copyright 2006 by American Association of Zoo Veterinarians.

Journal of Zoo and Wildlife Medicine↗

USGS2024

Brodifacoum isomer formulations with potentially lower risk to non-target wildlife

Anticoagulant rodenticides (ARs) have a long history of successful use in controlling vertebrate pest and invasive species. Despite regulatory efforts to mitigate risk, non-target wildlife may be unintentionally exposed to ARs through various trophic pathways, and depending on dose, exposure can result in adverse effects and mortality. Second-generation ARs (SGARs) are mixtures of cis- and trans-diastereoisomers (each including two stereoisomers) that exhibit similar in vitro inhibitory potency for vitamin K epoxide reductase in rodent microsomal assay systems. Some diastereoisomers and hence some individual stereoisomers are preferentially metabolized in vivo, resulting in residue patterns in exposed target rodents that differ from the bait formulations. Use of less persistent but equally potent SGAR stereoisomers in baits results in lower tissue residues in target rodents, which in turn constitutes lower risk when consumed by non-target wildlife. The toxicity of two brodifacoum formulations with stereoisomers having markedly different elimination half-lives in rats (Formulation A containing the two least persistent stereoisomers, and Formulation B containing the most persistent stereoisomer) were tested in a 7-day dietary feeding trial with American kestrels. Based on previous kestrel studies using commercially available brodifacoum, Formulations A and B were each provided at three dietary concentrations (0.05, 0.1 and 0.5 µg/g diet, 4 kestrels/dose level) predicted to cause a range of toxicity. Compared to unexposed controls, all kestrels that ingested 0.5 µg/g diet of the longer-lived Formulation B exhibited extreme coagulopathy. In contrast, the 0.5 µg/g diet of the shorter-lived Formulation A yielded only a modest lengthening of clotting time in just 1 of the 4 exposed kestrels. These findings support the notion that SGAR baits enriched with less persistent stereoisomers may pose lower hazard and ultimately risk to non-target wildlife.

Conference Paper↗

USGS2013

Diet of the eastern mudminnow (Umbra pygmaea DeKay) from two geographically distinct populations within the North American native range

Umbra pygmaea (Eastern Mudminnow) is a freshwater species common in Atlantic slope coastal lowlands from southern New York to northern Florida and is typical of slow-moving, mud-bottomed, and highly vegetated streams, swamps, and small ponds. We examined its seasonal food habits at the Great Swamp National Wildlife Refuge (NWR), NJ and at the Croatan National Forest, NC. A total of 147 Eastern Mudminnow from 35–112 mm TL and 190 Eastern Mudminnow from 22–89 mm TL were examined from these sites, respectively. At both locations, we found it to be a bottom-feeding generalist that consumes cladocerans, ostracods, chironomid larvae, coleopteran larvae, and other insects and crustaceans. Ostracods were most common in the diet at the Great Swamp NWR and occurred in 62% ± 2.5% of the stomachs with food. At Croatan National Forest, chironomid larvae were most common and occurred in 66.7% ± 15.8% of the stomachs. There were no statistically significant differences in diet composition between the sites during the winter, summer, and fall. However, when compared on an annual basis, Jaccard’s Index (θ J = 0.636, P = 0.05) suggested that the diet at the two study sites was significantly different. While we identified the same major food groups at both locations, the utilization of these food groups varied seasonally. Detritus was a major stomach content at both locations throughout the year. We also documented cannibalism during the summer season at both locations. The seasonal diet of the Eastern Mudminnow was similar to that of Umbra limi (Central Mudminnow) and Umbra krameri (European Mudminnow). Our findings here are the first quantitative examinations of seasonal differences in the diet of the Eastern Mudminnow within its native North American range.

Northeastern Naturalist↗

USGS2008

Linking landscapes and habitat suitability scores for diadromous fish restoration in the susquehanna river basin

Dams within the Susquehanna River drainage, Pennsylvania, are potential barriers to migration of diadromous fishes, and many are under consideration for removal to facilitate fish passage. To provide useful input for prioritizing dam removal, we examined relations between landscape-scale factors and habitat suitability indices (HSIs) for native diadromous species of the Susquehanna River. We used two different methods (U.S. Fish and Wildlife Service method: Stier and Crance [1985], Ross et al. [1993a, 1993b, 1997], and Pardue [1983]; Pennsylvania State University method: Carline et al. [1994]) to calculate HSIs for several life stages of American shad Alosa sapidissima, alewives Alosa pseudoharengus, and blueback herring Alosa aestivalis and a single HSI for American eels Anguilla rostrata based on habitat variables measured at transects spaced every 5 km on six major Susquehanna River tributaries. Using geographical information systems, we calculated land use and geologic variables upstream from each transect and associated those data with HSIs calculated at each transect. We then performed canonical correlation analysis to determine how HSIs were linked to geologic and land use factors. Canonical correlation analysis identified the proportion of watershed underlain by carbonate rock as a positive correlate of HSIs for all species and life stages except American eels and juvenile blueback herring. We hypothesize that potential mechanisms linking carbonate rock to habitat suitability include increased productivity and buffering capacity. No other consistent patterns of positive or negative correlation between landscape-scale factors and HSIs were evident. This analysis will be useful for prioritizing removal of dams in the Susquehanna River drainage, because it provides a broad perspective on relationships between habitat suitability for diadromous fishes and easily measured landscape factors. This approach can be applied elsewhere to elucidate relationships between fine- and coarse-scale variables and suitability of habitat for fishes. ?? Copyright by the American Fisheries Society 2008.

North American Journal of Fisheries Management↗

USGS2025

Bears avoid residential neighborhoods in response to the experimental reduction of anthropogenic attractants

Introduction: Urbanization is an extreme form of land use alteration, with human development driving changes in the distribution of resources available to wildlife. Some large carnivores have learned to exploit anthropogenic food resources in urban development, resulting in human-carnivore conflict that can have detrimental impacts to people and carnivores, as exemplified by American black bears. Management agencies commonly promote the use of bear-resistant garbage containers for reducing conflicts, but little is known about the actual behavioral responses of bears to this intervention. Methods: To understand whether black bears alter their behavior in response to changes in residential waste management, we investigated patterns of bear behavior in Durango, Colorado, where anthropogenic attractants were experimentally manipulated. Using location data from collared black bears, we modeled resource selection and movement in response to areas that had received bear-resistant garbage containers compared to those that did not. Results: Bears avoided residential areas where garbage availability had been reduced, and this avoidance response increased over subsequent years, potentially suggesting that bears were learning from the management intervention. Bear movement rates, however, were not notably affected by the garbage reduction. Discussion: Our findings highlight the importance of reducing the availability of anthropogenic attractants for changing bear behavior and reducing risk of urban human-bear conflict, and that these responses can strengthen over time as bears learn from the management intervention.

Colorado↗

USGS2000

The role of population monitoring in the management of North American waterfowl

Despite the effort and expense devoted to large-scale monitoring programs, few existing programs have been designed with specific objectives in mind and few permit strong inferences about the dynamics of monitored systems. The waterfowl population monitoring programs of the U.S. Fish and Wildlife Service, Canadian Wildlife Service and state and provincial agencies provide a nice example with respect to program objectives, design and implementation. The May Breeding Grounds Survey provides an estimate of system state (population size) that serves two primary purposes in the adaptive management process: identifying the appropriate time-specific management actions and updating the information state (model weights) by providing a basis for evaluating predictions of competing models. Other waterfowl monitoring programs (e.g., banding program, hunter questionnaire survey, parts collection survey, winter survey) provide estimates of vital rates (rates of survival, reproduction and movement) associated with system dynamics and variables associated with management objectives (e.g., harvest). The reliability of estimates resulting from monitoring programs depends strongly on whether considerations about spatial variation and detection probability have been adequately incorporated into program design and implementation. Certain waterfowl surveys again provide nice examples of monitoring programs that incorporate these considerations.

Book chapter↗

USGS1950

Raccoons of North and Middle America

The raccoons, genus Procyon, colloquially known as “coons,” belong to the carnivorous family Procyonidae, which also includes the American genera Nasua, Nasuella, Bassaricyon, and Potos, and the Old World genera Ailurus and Ailuropoda of the subfamily Ailurinae. The members of the Procyon lotor group (subgenus Procyon), with a transcontinental range from southern Canada to Panama, except in parts of the Rocky Mountain region, and including those inhabiting several distant islands, are among the most familiar and characteristic of North American mammals. This group is not known to occur south of Panama. It is overlapped in the Isthmian region by the so-called crab-eating raccoons of the subgenus Euprocyon, which range from that northern limit as far south as Paraguay in South America. The raccoons have been greatly reduced in numbers or have disappeared in many formerly wooded sections, owing to clearing and intensive human occupation. Despite adverse conditions, however, they have maintained themselves in many places with remarkable tenacity. Trapping for other fur bearers may have reduced the northern fringe to some extent, but the general range of the group has been little diminished. At the present time raccoons reach their northern limit in regular occurrence on Vancouver Island, B. C. The continental forms of the subgenus Procyon constitute a compact assemblage of closely allied geographic races all assignable to Procyon lotor. Complete intergradation is evident in numerous cases and the relative value and combination of characters presented indicate such close relationships that it can safely be assumed where lack of material leaves gaps in the known ranges. In the present revision of the raccoons are treated the North American continental species as far as the eastern border of Panama and the species on outlying islands along both the Atlantic and the Pacific coasts. Thirty species and subspccics are recognized. Twenty-nine of these are assigned to the subgenus Procyon and one to the subgenus Euproc yon. The revision is based mainly on a study of raccoon material in the collection of Biological Surveys, Fish and Wildlife Service, and in other collections in the United States National Museum. These and 358 specimens borrowed from other museums make a total of 1,337 examined. The assemblage included the types or topotypes of most of the known species and subspecies. For the loan of specimens the writer is especially indebted to Dr. Thomas Barbour, Museum of Comparative Zoology, Cambridge, Mass. ; the late Dr. Joseph Grinnell, Museum of Vertebrate Zoology, Berkeley, Calif.; Dr. W. H. Osgood, Chicago Natural History Museum, Chicago, Ill.; Dr. H. E. Anthony, American Museum of Natural History, New York City; Dr. R. M. Anderson, National Museum of Canada, Ottawa, Canada; the late Oldfield Thomas of the British Museum (Natural History) ; Francis Kermode, Provincial Museum, Vancouver, British Columbia; Dr. L. R. Dice, Museum of Zoology, University of Michigan, Ann Arbor, Mich.; and the late D. R. Dickey, Pasadena, Calif. Grateful acknowledgment is also due to Percy Shufeldt, La Cueva, N. Vex., for the generous donation of specimens collected by him in Campeche, Mexico. Notes on his examination of specimens in the British Museum have been kindly furnished by Dr. Remington Kellogg, United States National Museum, Washington, D. C. Stanley P. Young, Fish and Wildlife Service, Washington, D. C., generously supplied the photograph for the frontispiece. Dr. E. W. Nelson became keenly interested in the raccoons, as shown by his work on those inhabiting the Florida Keys (1930a).' During the same time and in the following year new subspecies were described jointly by Nelson and the writer in preparation for a revision of the group; but other projects claimed attention and our collaboration could not be carried beyond this preliminary stage

North American Fauna↗

USGS2013

The U.S. Geological Survey Bird Banding Laboratory: an integrated scientific program supporting research and conservation of North American birds

The U.S. Geological Survey (USGS) Bird Banding Laboratory (BBL) was established in 1920 after ratification of the Migratory Bird Treaty Act with the United Kingdom in 1918. During World War II, the BBL was moved from Washington, D.C., to what is now the USGS Patuxent Wildlife Research Center (PWRC). The BBL issues permits and bands to permittees to band birds, records bird band recoveries or encounters primarily through telephone and Internet reporting, and manages more than 72 million banding records and more than 4.5 million records of encounters using state-of-the-art technologies. Moreover, the BBL also issues bands and manages banding and encounter data for the Canadian Bird Banding Office (BBO). Each year approximately 1 million bands are shipped from the BBL to banders in the United States and Canada, and nearly 100,000 encounter reports are entered into the BBL systems. Banding data are essential for regulatory programs, especially migratory waterfowl harvest regulations. The USGS BBL works closely with the U.S. Fish and Wildlife Service (USFWS) to develop regulations for the capture, handling, banding, and marking of birds. These regulations are published in the Code of Federal Regulations (CFR). In 2006, the BBL and the USFWS Division of Migratory Bird Management (DMBM) began a comprehensive revision of the banding regulations. The bird banding community has three major constituencies: Federal and State agency personnel involved in the management and conservation of bird populations that include the Flyway Councils, ornithological research scientists, and avocational banders. With increased demand for banding activities and relatively constant funding, a Federal Advisory Committee (Committee) was chartered and reviewed the BBL program in 2005. The final report of the Committee included six major goals and 58 specific recommendations, 47 of which have been addressed by the BBL. Specifically, the Committee recommended the BBL continue to support science, conservation, and management of birds through the use of banding and banding data and that the BBL be managed by the USGS and located at the USGS Patuxent Wildlife Research Center (PWRC) in Laurel, Maryland. Recommendations that have not been implemented include those already addressed by other organizations, as well as lower priority, such as developing a BBL business plan. The comprehensive review and recommendations of the Committee, the response of the BBL to address the Committee’s recommendations, and other improvements to its operations have positioned the BBL to provide a high level of service to the banding community. As new technologies are developed and incorporated into BBL operations, further efficiencies are expected to enable the BBL to continue to meet emerging scientific needs.

Open-File Report↗

USGS2019

Black bears alter movements in response to anthropogenic features with time of day and season

Background With the growth and expansion of human development, large mammals will increasingly encounter humans, elevating the likelihood of human-wildlife conflicts. Understanding the behavior and movement of large mammals, particularly around human development, is important for crafting effective conservation and management plans for these species. Methods We used GPS collar data from American black bears ( Ursus americanus ) to determine how seasonal food resources and human development affected bear movement patterns and resource use across the Commonwealth of Massachusetts. Results We found that though bears moved more and avoided human development during crepuscular and daylight hours than at night, bears preferentially moved through human dominated areas at night. This indicates bears were mitigating the risk of human development by altering their behavior to exploit these areas when human activity is low. This behavioral shift was most prominent in the spring, when natural foods are scarce, and fall, when energetic demands are high. We also observed a high degree of inter-individual variability among our sample of bears. Bears with a higher density of houses in their home ranges (~ 75 houses/km2) displayed less avoidance of human development than more rural bears. Furthermore, bear movement models had different explanatory variables, with preference or avoidance of a variable being dependent on the individual bear. To account for this individuality in our predictive surfaces, we projected the probability of movement for each season and time of day using a spatially weighted surface centered on each bear’s home range. Conclusions We found that black bears in Massachusetts are operating in a landscape of fear and are altering their movement patterns to use developed areas when human activity is low. We also found seasonal and diel differences among individual bears in resource selection during movement. Accounting for these individual, seasonal, and diel differences when assessing movement for large mammals is especially important if predictive surfaces are to be used in identifying areas for conservation and management.

Movement Ecology↗

USGS2009

Modeling the effects of environmental disturbance on wildlife communities: Avian responses to prescribed fire

Prescribed fire is a management tool used to reduce fuel loads on public lands in forested areas in the western United States. Identifying the impacts of prescribed fire on bird communities in ponderosa pine (Pinus ponderosa) forests is necessary for providing land management agencies with information regarding the effects of fuel reduction on sensitive, threatened, and migratory bird species. Recent developments in occupancy modeling have established a framework for quantifying the impacts of management practices on wildlife community dynamics. We describe a Bayesian hierarchical model of multi-species occupancy accounting for detection probability, and we demonstrate the model's usefulness for identifying effects of habitat disturbances on wildlife communities. Advantages to using the model include the ability to estimate the effects of environmental impacts on rare or elusive species, the intuitive nature of the modeling, the incorporation of detection probability, the estimation of parameter uncertainty, the flexibility of the model to suit a variety of experimental designs, and the composite estimate of the response that applies to the collection of observed species as opposed to merely a small subset of common species. Our modeling of the impacts of prescribed fire on avian communities in a ponderosa pine forest in Washington indicate that prescribed fire treatments result in increased occupancy rates for several bark-insectivore, cavity-nesting species including a management species of interest, Black-backed Woodpeckers (Picoides arcticus). Three aerial insectivore species, and the ground insectivore, American Robin (Turdus migratorius), also responded positively to prescribed fire, whereas three foliage insectivores and two seed specialists, Clark's Nutcracker (Nucifraga columbiana) and the Pine Siskin (Carduelis pinus), declined following treatments. Land management agencies interested in determining the effects of habitat manipulations on wildlife communities can use these methods to provide guidance for future management activities. ?? 2009 by the Ecological Society of America.

Ecological Applications↗

USGS2025

Estimated annual abundance of migratory Peale's Peregrine Falcons in coastal Washington, USA

Following the recovery of Peregrine Falcons ( Falco peregrinus ), the US Fish and Wildlife Service began a process to allow “take” (capture) of wild peregrines for falconry in the United States. Recently, that effort involved generating updated estimates of the collective abundance of the three North American peregrine subspecies: F. p. anatum , F. p. tundrius , and F. p. pealei (Peale's Peregrine Falcon). Because of the more limited distribution of F. p. pealei , we conducted an analysis specific to its geographic range. We analyzed data from a long-term banding and resighting program on three beaches on the southern coast of Washington, USA, to estimate the annual abundance of migrating and overwintering F. p. pealei , using the capture histories of 250 Peregrine Falcons, nearly all of which were captured during 1277 vehicle surveys between 1995 and 2024. Because we studied an open population of migratory individuals, we used a zero-inflated Poisson log-normal mark-resight model to estimate annual abundance. For the analyses, we partitioned our survey data into sighting periods, each of which extended from 1 September of one year to 31 May of the next. We anticipated that first-year F. p. pealei would be identified for falconry take, and our annual abundance estimates for first-year birds of this subspecies ranged from a high of 24.8 ± 6.1 (SE) individuals in the 2014–2015 sighting period to a low of 1.9 ± 1.4 individuals in the 2023–2024 sighting period. Peregrine Falcon abundance varied annually and appeared to decline during the last two sighting periods. Our sighting rate of marked peregrines was negatively associated with Bald Eagle ( Haliaeetus leucocephalus ) encounter rate. There was a lesser relationship to human activity, and we suspect the change in sighting rate was a behavioral response by Peregrine Falcons to the threat of kleptoparasitism by Bald Eagles. We currently lack comprehensive information about the natal origin of the individual peregrines in our study area, which prevented us from assessing the degree to which falconry take from the pool of falcons migrating to or through Washington might potentially impact local or regional abundances. Although a better understanding of natal origins is needed, our data add clarity to the migration and overwinter abundance of F. p. pealei on the Washington coast and may inform decisions about the take of this subspecies for falconry.

Washington↗

USGS2006

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI’s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI’s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists’ League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program’s development and success. The value of ARMI’s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI’s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI’s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗

USGS2021

Pathology of Lagovirus europaeus GI.2/RHDV2/b (rabbit hemorrhagic disease virus 2) in native North American lagomorphs

Rabbit hemorrhagic disease, a notifiable foreign animal disease in the US, was reported for the first time in wild native North American lagomorphs in April 2020 in the southwestern US. Affected species included the desert cottontail ( Sylvilagus audubonii ), mountain cottontail ( Sylvilagus nuttallii ), black-tailed jackrabbit ( Lepus californicus ), and antelope jackrabbit ( Lepus alleni ). Desert cottontails ( n =7) and black-tailed jackrabbits ( n =7) collected in April and May 2020 were necropsied at the US Geological Survey National Wildlife Health Center and tested positive for Lagovirus europaeus GI.2, also known as rabbit hemorrhagic disease virus 2 (GI.2/RHDV2/b), by real-time PCR at the US Department of Agriculture's Foreign Animal Disease Diagnostic Laboratory. Gross and microscopic lesions were similar to those reported in European rabbits ( Oryctolagus cuniculus ) and other hare ( Lepus ) species with GI.2/RHDV2/b infection; they included epistaxis (12/13; 92%); massive hepatocellular dissociation (14/14; 100%) and necrosis or apoptosis (11/11; 100%); pulmonary congestion (12/12; 100%), edema (12/13; 92%), and hemorrhage (11/12; 92%); and acute renal tubular injury (3/8; 38%). As in previous reports, massive hepatocellular dissociation and necrosis or apoptosis were the most diagnostically distinct finding. As North American Sylvilagus and Lepus species appear to be susceptible to fatal GI.2/RHDV2/b infection, additional work is needed to understand the host range, pathogenicity, and potential population effects of GI.2/RHDV2/b in North America.

Arizona, New Mexico, Texas↗

USGS2007

Sedimentation History of Halfway Creek Marsh, Upper Mississippi River National Wildlife and Fish Refuge, Wisconsin, 1846-2006

The history of overbank sedimentation in the vicinity of Halfway Creek Marsh near La Crosse, Wis., was examined during 2005?06 by the U.S. Geological Survey and University of Wisconsin?Madison as part of a broader study of sediment and nutrient loadings to the Upper Mississippi River bottomlands by the U.S. Environmental Protection Agency, U.S. Fish and Wildlife Service, and U.S. Geological Survey. Historical sedimentation patterns and rates were interpreted from field-scale topographic surveys and sediment cores collected from the marsh and upstream flood plains. Historical maps and aerial photographs were used to establish the timing of disturbances and to document changes in channel patterns after Euro-American settlement (post 1846). Episodic overbank sedimentation patterns and rates were linked to watershed agricultural activity, large floods, artificial levee construction, channel alterations, and dam failures over the past 160 years. These forces affected sedimentation on and between levees, the development of alluvial fans and flood-plain splays, and the general pattern of flood-plain sedimentation through the upper and lower marsh. Historical overbank deposits, episodically deposited after about 1860, are as much as 6 feet thick in the upper marsh and as much as 4 feet thick in the lower marsh, representing a total volume of approximately 1.8 million cubic yards. These stratified deposits consist of multiple layers of silt and clay, very fine to fine sand, and some medium to very coarse sand. Coarse-grained deposits are associated with flood-plain splays caused by breaches in artificial levees during large floods. Estimated sedimentation rates were highest from 1919 to 1936 [26,890 cubic yards per year (yd3/yr)] and exceeded by about 30 times the 1846?85 rate of 920 yd3/yr and exceeded by 7 times the 1994?2006 rate of 3,740 yd3/yr. The 1994?2006 sedimentation rate was the lowest since Euro-American settlement, but natural levees along the 1994?2006 channel of Halfway Creek through the lower marsh continued to form and are currently (2006) about 1 foot higher than the surrounding marsh. Natural levee building in the lower marsh from 1994?2006 was accentuated by the lack of overbank sediment storage in the upper marsh. The historical storage of sediment in the upper and lower marsh affects modern streamflow and sediment transport processes of Halfway Creek and Sand Lake Coulee through the marsh, and it also affects marsh vegetation and wildlife habitat. Results from this investigation will help improve the understanding of how past overbank sedimentation patterns continue to influence modern and future water quality, sediment transport, nutrient loads, and water-related resources in riparian habitats common to the Upper Mississippi River National Wildlife and Fish Refuge.

Scientific Investigations Report↗

USGS1987

Biogeochemical cycling of selenium in the San Joaquin Valley, California, USA

Subsurface agricultural drainage waters from western San Joaquin Valley, California, were found to contain elevated concentrations of the element selenium in the form of selenate. In 1978, these drainage waters began to replace previous input to Kesterson Reservoir, a pond system within Kesterson National Wildlife Refuge; this substitution was completed by 1982. In the 1983 nesting season, unusual rates of deformity and death in embryos and hatchlings of wild aquatic birds (up to 64% of eared grebe and American coot nests) occurred at the refuge and were attributed to selenium toxicosis. Features necessary for contamination to have taken place included geologic setting, climate, soil type, availability of imported irrigation water, type of irrigation, and the unique chemical properties of selenium. The mechanisms of biogeochemical cycling raise questions about other ecosystems and human exposure.

California↗

USGS2018

Using spatially‐explicit capture–recapture models to explain variation in seasonal density patterns of sympatric ursids

Understanding how environmental factors interact to determine the abundance and distribution of animals is a primary goal of ecology, and fundamental to the conservation of wildlife populations. Studies of these relationships, however, often assume static environmental conditions, and rarely consider effects of competition with ecologically similar species. In many parts of their shared ranges, grizzly bears Ursus arctos and American black bears U. americanus have nearly complete dietary overlap and share similar life history traits. We therefore tested the hypothesis that density patterns of both bear species would reflect seasonal variation in available resources, with areas of higher primary productivity supporting higher densities of both species. We also hypothesized that interspecific competition would influence seasonal density patterns. Specifically, we predicted that grizzly bear density would be locally reduced due to the ability of black bears to more efficiently exploit patchy food resources such as seasonally abundant fruits. To test our hypotheses, we used detections of 309 grizzly and 597 black bears from two independent genetic sampling methods in spatially‐explicit capture–recapture (SECR) models. Our results suggest grizzly bear density was lower in areas of high black bear density during spring and summer, although intraspecific densities were also important, particularly during the breeding season. Black bears had lower densities in areas of high grizzly bear density in spring; however, density of black bears in early and late summer was best explained by primary productivity. Our results are consistent with the hypothesis that smaller‐bodied, more abundant black bears may influence the density patterns of behaviorally‐dominant grizzly bears through exploitative competition. We also suggest that seasonal variation in resource availability be considered in efforts to relate environmental conditions to animal density.

Montana↗

USGS2012

Waterbird nest monitoring program in San Francisco Bay (2005-10)

Historically, Forster’s Terns ( Sterna forsteri ), American Avocets ( Recurvirostra americana ), and Black-necked Stilts ( Himantopus mexicanus ) were uncommon residents of San Francisco Bay, California (Grinnell and others, 1918; Grinnell and Wythe, 1927; Sibley, 1952). Presently, however, avocets and stilts are the two most abundant breeding shorebirds in San Francisco Bay (Stenzel and others, 2002; Rintoul and others, 2003). More than 4,000 avocets and 1,000 stilts, roughly 20 percent of their San Francisco Bay wintering populations, breed within the estuary, making San Francisco Bay the largest breeding area for these species on the Pacific Coast (Stenzel and others, 2002; Rintoul and others, 2003). Forster’s Terns were first observed breeding in the San Francisco Bay in 1948 (110 nests); they had increased to over 4000 individuals by the 1980s (Sibley, 1952; Gill, 1977; Harvey and others, 1992; Carter and others, 1990) and were estimated at 2000–3000 for 1998–2002; (Strong and others, 2004). It is hypothesized that the relatively large size of the current waterbird breeding populations is a result of the creation of artificial salt evaporation ponds from the 1930s through the 1950s (Gill, 1977; Goals Project, 1999). Until recently, these salt ponds and associated islands used by waterbirds for nesting have been managed relatively similarly and have supported large breeding waterbird populations. Recently, the South Bay Salt Pond Restoration Project has implemented plans to convert 50–90 percent of the 15,000 acres of salt ponds in the South San Francisco Bay back to tidal marsh habitat. Therefore, there is concern that the Restoration Project, while benefiting other native species, could negatively influence local breeding populations of waterbirds that are reliant on salt pond habitats for both breeding and foraging. A primary goal of the South Bay Salt Pond Restoration Project is to maintain current breeding waterbird populations (South Bay Salt Pond Long-Term Restoration Project, 2004); thus, specific efforts are planned to ensure that the Restoration Project enhances the habitats of the remaining salt ponds for breeding waterbirds. Here, we provide a summary of nesting ecology data for Forster’s Terns, American Avocets, and Black-necked Stilts, collected from 2005 to 2010 in the areas of the South Bay Salt Pond Restoration Project, including lands managed by the Don Edwards San Francisco Bay National Wildlife Refuge and Eden Landing Ecological Reserve. These results provide baseline conditions for breeding waterbirds prior to implementation of most restoration actions and can be used to both guide future restoration actions as well as to determine the effect of the South Bay Salt Pond Restoration Project on breeding waterbirds. It is imperative to continue to collect nesting waterbird data annually to assess the response of birds to the South Bay Salt Pond Restoration Project.

California↗