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USGS2023

Annotated bibliography of scientific research on greater sage-grouse published from October 2019 to July 2022

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) created a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here and built on to incorporate new information. The greater sage-grouse (Centrocercus urophasianus; hereafter “GRSG”) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” under the Endangered Species Act was in part a result of a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the USGS has reviewed and summarized the scientific literature published since January 1, 2015. Our most recent GRSG literature summary was published in 2020 (Carter and others, 2020) and included products published through October 2, 2019. Here, we consider products published between October 2, 2019, and July 21, 2022. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Department of Agriculture Forest Service General Technical Reports and USGS Open-File Reports) on greater sage-grouse. We first systematically searched three reference databases and three government databases using the search phrase “greater sage-grouse.” We refined the initial list of products by removing (1) duplicates, (2) publications not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (3) products for which greater sage-grouse was not a research focus or the study did not present new data or findings about greater sage-grouse. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified management topics addressed by each product; for example, species and population characteristics. We also identified projects that provided new geospatial data. The review process for this annotated bibliography included two initial internal colleague reviews of each summary, requesting input on each summary from an author of the original publication, and formal peer review. Our initial searches resulted in 221 total products, of which 147 met our criteria for inclusion. Across products summarized in the annotated bibliography, broad-scale habitat characteristics, behavior or demographics, site-scale habitat characteristics, habitat selection, and population estimates or targets were the most commonly addressed management topics. The online version of this bibliography, which will be available on the Science for Resource Managers tool ( https://apps.usgs.gov/science-for-resource-managers ), will be searchable by topic, location, and year, and will include links to each original publication. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore sagebrush landscapes and GRSG populations across the GRSG range.

Open-File Report↗
USGS2025

Medium resolution lunar topography: An updated view of the lunar surface from stereophotogrammetrically derived DTMs

Digital Terrain Models (DTMs) are essential for lunar exploration, supporting critical applications such as landing site selection,mission planning, and in situ resource utilization. This study presents a comprehensive reprocessing of the Kaguya Terrain Camera (TC) dataset using the NASA Ames Steropipeline to generate over 130,000 medium-resolution DTMs with nearly global lunar coverage to ±70°. We observed significant bowing in the DTMs derived using the publicly available interior orientation and have used a novel technique, in the planetary sciences, to re-estimate the boresight and eight-parameter distortion coefficients. Inter-DTM vertical alignment errors are also present due to spacecraft jitter and we present the methodology used to jitter correct the DTMs. DTMs are aligned to the Lunar Orbiter Laser Altimeter (LOLA) point cloud and absolute errors are mean centered to zero with a mean standard deviation of 24 meters. Leveraging advanced stereophotogrammetry techniques, updated sensor models, and rigorous alignment to the Lunar Orbiter Laser Altimeter (LOLA) dataset, we achieved horizontal accuracies inside the orthoimage resolution (mean of 30 meters per pixel) and 2-4 meters vertically. These high-quality DTMs serve as critical inputs for planetary science, engineering, and future lunar mission planning. The methods and insights gained from this large-scale processing effort establish a framework for automating DTM derivation on other planetary bodies.

Conference Paper↗
USGS2021

Habitat suitability index model improvement recommendations

As part of the model improvement effort for the 2023 Coastal Master Plan, the Habitat Suitability Index (HSI) models used during previous master plans were reevaluated to assess how the model relationships could be improved, and to determine what species should be included in the master plan analyses. This process considered the technical reviews, comments, and suggested improvements provided by model developers, advisory groups, and other experts during previous master plans. Reviews were then conducted to determine the availability of data and information that could be used to make model improvements. As a result of this effort, a recommended list of relevant species to model is provided, and HSI model improvements are recommended that are categorized by whether the suitability index (SI) relationship to be improved is statistical-based or literature-based. The species recommended to be included in the 2023 Coastal Master Plan analyses are: eastern oyster, brown shrimp, white shrimp, blue crab, crayfish, gulf menhaden, spotted seatrout, largemouth bass, American alligator, gadwall, mottled duck, brown pelican, seaside sparrow, and bald eagle. These species were selected because they represent a range of taxonomies, life histories, trophic levels, and habitats, and most are commercially- or recreationally-important in coastal Louisiana. Most of these species were also included in the 2017 Coastal Master Plan analyses, and the models used during that effort should be further improved. Seaside sparrow and bald eagle are new for the master plan, and new models should be developed for the analyses. The 2017 fish, shrimp, and blue crab HSI models included a water quality SI that was based on statistical analyses of species catch and environmental data collected by the Louisiana Department of Wildlife and Fisheries. As suggested during the 2017 Coastal Master Plan, the modeling approach used to develop the water quality SI was revisited and alternate modeling approaches were explored. Using literature and an evaluation of the general steps of model development, three components for HSI model improvement were identified, including 1) selecting alternative modeling approach(es); 2) detecting and resolving statistical issues; and 3) improving model fit and evaluation. Multiple options for each component were explored, which resulted in a proposed multi-step phased approach for model improvement. This proposed approach entails improving the generalized linear models used for the 2017 water quality SIs and then, if desired, comparing them to alternative model approaches (e.g., generalized additive models) to explore model performance and select the best approach to use for the 2023 Coastal Master Plan HSI models. All of the existing master plan HSI models include literature-based SIs, which use information from published studies of species-habitat associations to derive suitability relationships. Similar to previous master plans, these literature-based SIs should be updated and improved for the 2023 Coastal Master Plan using recent literature and new ecological knowledge. Preliminary reviews were conducted and recent information was found that could be used to improve the eastern oyster, crayfish, and potentially brown pelican HSI models; but no appropriate recent literature was located for improvement of the American alligator, gadwall, and mottled duck HSI models. However, it is recommended that the literature reviews and information searches be continued. In addition to the statistical-based water quality SI, the 2017 fish, shrimp, and blue crab HSI models also included a structural habitat SI that was based on literature showing high densities of these species in fragmented marsh. The relationship used for this SI, however, did not account for the effects of other estuarine habitats, such as submerged aquatic vegetation and oyster reefs, which are also important to these species. Therefore, a meta-analysis approach is proposed that would estimate the relative importance of these habitats for each species, and the results of this analysis could be used to calculate a new structural habitat SI for the 2023 Coastal Master Plan.

Report↗
USGS2007

Introduction to Regional Geology, Tectonics, and Metallogenesis of Northeast Asia

Purpose This introduction presents an overview of the regional geology, tectonics, and metallogenesis of Northeast Asia. The major purposes are to provide a relatively short summary of these features for readers who are unfamiliar with Northeast Asia; a general scientific introduction for the succeeding chapters of this volume; and an overview of the methodology of metallogenic and tectonic analysis employed for Northeast Asia. The introduction also describes how a high-quality metallogenic and tectonic analysis, including synthesis of an associated metallogenic-tectonic model will greatly benefit refinement of mineral deposit models and deposit genesis; improvement of assessments of undiscovered mineral resources as part of quantitative mineral resource assessment studies; land-use and mineral exploration planning; improvement of interpretations of the origins of host rocks, mineral deposits, and metallogenic belts; and suggestions for new research. The compilation, synthesis, description, and interpretation of metallogenesis and tectonics of major regions, such as Northeast Asia (Eastern Russia, Mongolia, northern China, South Korea, and Japan) and the Circum-North Pacific (Russian Far East, Alaska, and Canadian Cordillera) requires a complex methodology. The methodology includes: (1) definitions of key terms; (2) compilation of a regional geologic base map that can be interpreted according to modern tectonic concepts and definitions; (3) compilation of a mineral deposit database that enables the determination of mineral deposit models, and relations of deposits to host rocks and tectonic origins; (4) synthesis of a series of mineral deposit models that characterize the known mineral deposits and inferred undiscovered deposits of the region; (5) compilation of a series of maps of metallogenic belts constructed on the regional geologic base map; and (6) formulation of a unified metallogenic and tectonic model. The summary of regional geology and metallogenesis in this introduction is based on publications of the major international collaborative studies of the metallogenesis and tectonics of Northeast Asia that were led by the U.S. Geological Survey. These studies have produced two broad types of publications. One type is a series of regional geologic, mineral deposit, and metallogenic belt maps and companion descriptions for the regions. Examples of major publications of this type are Obolenskiy and others (2003a, b, 2004), Parfenov and others (2003, 2004a, b), Nokleberg and others (2004), Rodionov and others (2004), and Naumova and others (2006). The other type is a suite of metallogenic and tectonic analyses of these same regions. Examples of major publications of this type are Rodionov and others (2004), Nokleberg and others (2000, 2004, 2005), and Naumova and others (2006). The Northeast Asia project area consists of eastern Russia (most of Siberia and most of the Russian Far East), Mongolia, Northern China, South Korea, Japan, and adjacent offshore areas. This area is approximately bounded by 30 to 82? N. latitude and 75 to 144? E. longitude. The major participating agencies are the Russian Academy of Sciences, Academy of Sciences of the Sakha Republic (Yakutia), VNIIOkeangeologia and Ministry of Natural Resources of the Russian Federation, Mongolian Academy of Sciences, Mongolian University of Science and Technology, Mongolian National University, Jilin University, Changchun, China, the China Geological Survey, the Korea Institute of Geosciences and Mineral Resources, the Geological Survey of Japan/AIST, University of Texas Arlington, and the U.S. Geological Survey. The Northeast Asia project extends and build on data and interpretations from a previous project on the Major Mineral Deposits, Metallogenesis, and Tectonics of the Russian Far East, Alaska, and the Canadian Cordillera that was conducted by the USGS, the Russian Academy of Sciences, the Alaska Division of Geological and Geophysical Surveys,

Open-File Report↗
USGS2011

Monitoring to assess progress toward meeting the Assabet River, Massachusetts, phosphorus total maximum daily load - Aquatic macrophyte biomass and sediment-phosphorus flux

In 2004, the Total Maximum Daily Load (TMDL) for Total Phosphorus in the Assabet River, Massachusetts, was approved by the U.S. Environmental Protection Agency. The goal of the TMDL was to decrease the concentrations of the nutrient phosphorus to mitigate some of the instream ecological effects of eutrophication on the river; these effects were, for the most part, direct consequences of the excessive growth of aquatic macrophytes. The primary instrument effecting lower concentrations of phosphorus was to be strict control of phosphorus releases from four major wastewatertreatment plants in Westborough, Marlborough, Hudson, and Maynard, Massachusetts. The improvements to be achieved from implementing this control were lower concentrations of total and dissolved phosphorus in the river, a 50-percent reduction in aquatic-plant biomass, a 30-percent reduction in episodes of dissolved oxygen supersaturation, no low-flow dissolved oxygen concentrations less than 5.0 milligrams per liter, and a 90-percent reduction in sediment releases of phosphorus to the overlying water. In 2007, the U.S. Geological Survey, in cooperation with the Massachusetts Department of Environmental Protection, initiated studies to evaluate conditions in the Assabet River prior to the upgrading of wastewater-treatment plants to remove more phosphorus from their effluents. The studies, completed in 2008, implemented a visual monitoring plan to evaluate the extent and biomass of the floating macrophyte Lemna minor (commonly known as lesser duckweed) in five impoundments and evaluated the potential for phosphorus flux from sediments in impounded and free-flowing reaches of the river. Hydrologically, the two study years 2007 and 2008 were quite different. In 2007, summer streamflows, although low, were higher than average, and in 2008, the flows were generally higher than in 2007. Visually, the effects of these streamflow differences on the distribution of Lemna were obvious. In 2007, large amounts of floating macrophytes accumulated behind bridge constrictions and dams; in 2008, high flows during the early part of the growing season carried floating macrophytes past bridges and over dams, minimizing accumulations. Samples of Lemna were collected and weighed to provide an estimate of Lemna biomass based on areal coverage during the summer growing seasons at eight sites in the five impoundments. Average estimated biomass during 2007 was approximately twice the 2008 biomass in each of the areas monitored. In 2007, in situ hyperspectral and high-resolution, multispectral data from the IKONOS satellite were obtained to evaluate the feasibility of using remote sensing to monitor the extent of aquatic plant growth in Assabet River impoundments. Three vegetation indices based on light reflectance were used to develop metrics with which the hyperspectral and satellite data were compared. The results of the comparisons confirmed that the high-resolution satellite imagery could differentiate among the common aquatic-plant associations found in the impoundments. The use of satellite imagery could counterbalance emphasis on the subjective judgment of a human observer, and airborne hyperspectral data can provide higher resolution imagery than multispectral satellite data. In 2007 and 2008, the potential for sediment flux of phosphorus was examined in free-flowing reaches of the river and in the two largest impoundments-Hudson and Ben Smith. These studies were undertaken to determine in situ flux rates prior to the implementation of the Assabet River Total Maximum Daily Load (TMDL) for phosphorus and to compare these rates with those used in the development and evaluation of the TMDL. Water samples collected from a chamber placed on the river bottom were analyzed for total phosphorus and orthophosphorus. Ambient dissolved oxygen concentrations and seasonal temperature differences appeared to affect the rates of sequestration and sediment release of phosphorus. When dissolved oxygen concentrations remained relatively high in the chambers and when the temperature was relatively low, the tendency was for phosphorus concentrations to decrease in the chambers, indicating sediment sequestration of phosphorus; when dissolved oxygen concentrations dropped to near zero and temperatures were warmest, phosphorus concentrations increased in the chambers, indicating phosphorus flux from the sediment. The rates of release and sequestration in the in situ studies were generally comparable with the rates determined in laboratory studies of Assabet River sediment cores for State and Federal agencies. Sediment-core and chamber studies produced substantial sediment fluxes to the water column only under extremely low-DO or anaerobic conditions rarely found in the Assabet River impoundments; thus, sediment is not likely to be a major phosphorus source, especially when compared to the wastewater effluent, which sustains higher ambient concentrations. The regulatory agencies now (2011) have substantial laboratory and field data with which to determine the required 90-percent reduction in phosphorus flux after the completion of upgrades to the wastewater-treatment plants that discharge to the Assabet River.

Massachusetts↗
USGS2011

A water-budget model and assessment of groundwater recharge for the Island of Hawai'i

Concern surrounding increasing demand for groundwater on the Island of Hawaiʻi, caused by a growing population and an increasing reliance on groundwater as a source for municipal and private water systems, has prompted a study of groundwater recharge on the island using the most current data and accepted methods. For this study, a daily water-budget model for the entire Island of Hawaiʻi was developed and used to estimate mean recharge for various land-cover and rainfall conditions, and a submodel for the Kona area was developed and used to estimate historical groundwater recharge in the Kona area during the period 1984–2008. Estimated mean annual recharge on the Island of Hawaiʻi is 6,594 million gallons per day, which is about 49 percent of mean annual rainfall. Recharge is highest on the windward slopes of Mauna Loa, below the tradewind inversion, and lowest on the leeward slopes of Kohala and Mauna Kea. Local recharge maxima also occur on (1) windward Kohala, with the exception of the northern tip, (2) windward Mauna Kea below the tradewind inversion, (3) windward Kīlauea, (4) the middle elevations of southeastern Mauna Loa, and (5) the lower-middle elevations of leeward Mauna Loa and southwestern Hualālai, in the Kona area. Local recharge minima also occur on (1) Mauna Kea and Mauna Loa, above the tradewind inversion, (2) the northern tip of Kohala, (3) leeward Kīlauea, (4) the southern tip of Mauna Loa, and (5) the northwestern slopes of Mauna Loa and Hualālai. In 18 of the 24 aquifer systems on the island, estimated mean annual recharge for baseline conditions was higher than the recharge estimates used in the 2008 State of Hawaiʻi Water Resource Protection Plan (2008 WRPP). Baseline conditions for this study were 2008 land cover and mean annual rainfall from the period 1916–1983. Estimates of recharge for the Māhukona, Waimea, and Hāwī aquifer systems, however, were between 29 and 38 percent lower than the 2008 WRPP estimates, mainly because of much higher evapotranspiration estimates in this study compared to the 2008 WRPP. For the drought simulation (1991–95 rainfall), the estimates of recharge for these three aquifer systems were only 15 to 33 percent of the sustainable yields (maximum allowable pumping rates) set by the 2008 WRPP. This may be cause for concern, as these areas are experiencing a rapid growth in development and a related growth in water demand. Recent projections of change in rainfall owing to effects of ongoing climate change generally indicate a slight increase in islandwide rainfall, and estimates of annual recharge in the late 21st century are higher than baseline estimates for every aquifer system, except ʻAnaehoʻomalu. On average, these aquifer-system recharge estimates are higher by about 8 percent compared to baseline estimates. In the Kona area, estimated groundwater recharge during the period 1984–2008 was highest during 2004–8 and lowest during 1999–2003, with the 1999–2003 recharge being about 50 percent of the 2004–8 recharge. These extremes in recharge coincided with the periods of lowest and highest mean rainfall, respectively. No seasonal pattern in recharge is discernible. Spatially, the highest recharge occurred in a belt about 4 miles wide running parallel to the coast about 2 miles inland. The sensitivity of recharge estimates to input parameters is related to the climate and land-cover conditions of the particular area of study. For the wet, forested areas characteristic of the windward side of the island, recharge was most sensitive to the ratio of runoff to rainfall. For the dry, grassland areas characteristic of the northwestern leeward side of the island, recharge was most sensitive to root depth. For the Kona area, characterized by moderate rainfall and a wide variety of land cover, recharge was most sensitive to the pan coefficient and canopy-evaporation rates in

Hawai'i↗
USGS2012

Spot-mapping underestimates song-territory size and use of mature forest by breeding golden-winged warblers in Minnesota, USA

Studies of songbird breeding habitat often compare habitat characteristics of used and unused areas. Although there is usually meticulous effort to precisely and consistently measure habitat characteristics, accuracy of methods for estimating which areas are used versus which are unused by birds remains generally untested. To examine accuracy of spot-mapping to identify singing territories of golden-winged warblers ( Vermivora chrysoptera ), which are considered an early successional forest specialists, we used spot-mapping and radiotelemetry to record song perches and delineate song territories for breeding male golden-winged warblers in northwestern Minnesota, USA. We also used radiotelemetry to record locations (song and nonsong perches) of a subsample ( n  = 12) of males throughout the day to delineate home ranges. We found that telemetry-based estimates of song territories were 3 times larger and included more mature forest than those estimated from spot-mapping. In addition, home ranges estimated using radiotelemetry included more mature forest than spot-mapping- and telemetry-based song territories, with 75% of afternoon perches located in mature forest. Our results suggest that mature forest comprises a larger component of golden-winged warbler song territories and home ranges than is indicated based on spot-mapping in Minnesota. Because it appears that standard observational methods can underestimate territory size and misidentify cover-type associations for golden-winged warblers, we caution that management and conservation plans may be misinformed, and that similar studies are needed for golden-winged warblers across their range and for other songbird species.

Minnesota↗
USGS2012

Aquatic organism passage at road-stream crossings—synthesis and guidelines for effectiveness monitoring

Restoration and maintenance of passage for aquatic organisms at road-stream crossings represents a major management priority, involving an investment of hundreds of millions of dollars (for example, U.S. Government Accounting Office, 2001). In recent years, passage at hundreds of crossings has been restored, primarily by replacing barrier road culverts with bridges or stream simulation culverts designed to pass all species and all life stages of aquatic life and simulate natural hydro-geomorphic processes (U.S. Forest Service, 2008). The current situation has motivated two general questions: 1. Are current design standards for stream simulation culverts adequately re-establishing passage for aquatic biota? and 2. How do we monitor and evaluate effectiveness of passage restoration? To address the latter question, a national workshop was held in March 2010, in Portland, Oregon. The workshop included experts on aquatic organism passage from across the nation (see table of participants, APPENDIX) who addressed four classes of methods for monitoring effectiveness of aquatic organism passage—individual movement, occupancy, demography, and genetics. This report has been written, in part, for field biologists who will be undertaking and evaluating the effectiveness of aquatic organism passage restoration projects at road-stream crossings. The report outlines basic methods for evaluating road-stream crossing passage impairment and restoration and discusses under what circumstances and conditions each method will be useful; what questions each method can potentially answer; how to design and implement an evaluation study; and points out the fundamental reality that most evaluation projects will require special funding and partnerships among researchers and resource managers. The report is organized into the following sections, which can be read independently: 1. Historical context: In this section, we provide a brief history of events leading up to the present situation involving aquatic organism passage as a useful context for the issues covered herein. 2. Importance of connectivity for aquatic organisms: In this section, we provide background information regarding the movement characteristics of aquatic organisms and their vulnerability to passage impairment, and the importance of connectivity for a broad diversity of aquatic vertebrates and invertebrates. This section should be useful for practitioners in selecting what species to monitor in relation to aquatic organism passage. 3. Methods for evaluating aquatic organism passage: In this section, we present a range of perspectives on alternatives for assessing and monitoring aquatic organism passage impairment and the effectiveness of passage restoration actions, including the following methods: Individual Movement, Occupancy Models, Abundance (Demography), and Molecular Genetic Markers. 4. Relevance, strengths, and limitations of the four methods: In this section, we discuss the utility of each of the methods as a tool for assessing and quantifying passage impairment and restoration effectiveness. 5. Guidelines for selecting a method: In this section, we review some fundamental criteria and guidelines to consider when selecting a method for monitoring in the context of answering three important questions that should be addressed when developing a plan for evaluating aquatic organism passage. 6. Study and monitoring design considerations: In this section, we discuss four key design elements that need to be considered when developing a monitoring design for assessing passage impairment and restoration. The basic objectives of the report are to: 1. Review the movement characteristics of five groups of aquatic organisms that inhabit streams and to assess their general vulnerability to passage impairment at road-stream crossings; 2. Review four methods for monitoring aquatic organism passage impairment and the effectiveness of actions to restore passage at road-stream crossing structures; 3. Assess the relevance, strengths, and limitations of each method as a monitoring tool; 4. Identify and discuss guidelines that will be useful for selecting a monitoring method; and 5. Discuss what we have identified as the four key elements that need to be considered when developing a monitoring design for assessing passage impairment and restoration at road-stream crossings.

Open-File Report↗
USGS2013

Identifying stakeholder-relevant climate change impacts: a case study in the Yakima River Basin, Washington, USA

Designing climate-related research so that study results will be useful to natural resource managers is a unique challenge. While decision makers increasingly recognize the need to consider climate change in their resource management plans, and climate scientists recognize the importance of providing locally-relevant climate data and projections, there often remains a gap between management needs and the information that is available or is being collected. We used decision analysis concepts to bring decision-maker and stakeholder perspectives into the applied research planning process. In 2009 we initiated a series of studies on the impacts of climate change in the Yakima River Basin (YRB) with a four-day stakeholder workshop, bringing together managers, stakeholders, and scientists to develop an integrated conceptual model of climate change and climate change impacts in the YRB. The conceptual model development highlighted areas of uncertainty that limit the understanding of the potential impacts of climate change and decision alternatives by those who will be most directly affected by those changes, and pointed to areas where additional study and engagement of stakeholders would be beneficial. The workshop and resulting conceptual model highlighted the importance of numerous different outcomes to stakeholders in the basin, including social and economic outcomes that go beyond the physical and biological outcomes typically reported in climate impacts studies. Subsequent studies addressed several of those areas of uncertainty, including changes in water temperatures, habitat quality, and bioenergetics of salmonid populations.

Washington↗
USGS1983

Land resource information needs of county government : a case study in Larimer County, Colorado

My two colleagues on the study team, Rex Burns of the Larimer County Planning Department, and Glenn McCarty of the Fort Collins office of the Soil Conservation Service, contributed substantially to this report; many of their written words have found their way directly into the text. Jill O'Gara later replaced Rex Burns as the Larimer County coordinator in the study's final stages. John Rold, Colorado State Geologist, assisted in coordinating our efforts at the beginning of this study. Lou Campbell, State Cartographer, gave valuable advice and assistance throughout the effort. Wallace Hansen and James Blakey of the USGS Geologic and Water Resources Divisions, respectively, read the final manuscript and helped in many other ways. Joanna Trolinger served as research assistant and manuscript typist. Many others in the USGS, SCS, and other organizations helped in supplying information and advice. Tom Bates, then Chairman of the USGS Central Region Earth Science Applications Task Force, was the originator of the study, leader of the USGS participation effort, and guiding inspiration throughout. The study was carried out in association with the Program on Environment and Behavior, Institute of Behavioral Science, University of Colorado, Boulder.

Open-File Report↗
USGS2014

Methow River Studies, Washington: abundance estimates from Beaver Creek and the Chewuch River screw trap, methodology testing in the Whitefish Island side channel, and survival and detection estimates from hatchery fish releases, 2013

Salmon and steelhead populations have been severely depleted in the Columbia River from factors such as the presence of tributary dams, unscreened irrigation diversions, and habitat degradation from logging, mining, grazing, and others (Raymond, 1988). The U.S. Geological Survey (USGS) has been funded by the Bureau of Reclamation (Reclamation) to provide evaluation of on-going Reclamation funded efforts to recover Endangered Species Act (ESA) listed anadromous salmonid populations in the Methow River watershed, a watershed of the Columbia River in the Upper Columbia River Basin, in north-central Washington State (fig. 1). This monitoring and evaluation program was funded to document Reclamation’s effort to partially fulfill the 2008 Federal Columbia River Power System Biological Opinion (BiOp) (National Oceanographic and Atmospheric Administration, Fisheries Division 2003). This Biological Opinion includes Reasonable and Prudent Alternatives (RPA) to protect listed salmon and steelhead across their life cycle. Species of concern in the Methow River include Upper Columbia River (UCR) spring Chinook salmon ( Oncorhynchus tshawytscha ), UCR summer steelhead ( O. mykiss ), and bull trout ( Salvelinus confluentus ), which are all listed as threatened or endangered under the ESA. The work done by the USGS since 2004 has encompassed three phases of work. The first phase started in 2004 and continued through 2012. This first phase involved the evaluation of stream colonization and fish production in Beaver Creek following the modification of several water diversions (2000–2006) that were acting as barriers to upstream fish movement. Products to date from this work include: Ruttenburg (2007), Connolly and others (2008), Martens and Connolly (2008), Connolly (2010), Connolly and others (2010), Martens and Connolly (2010), Benjamin and others (2012), Romine and others (2013a), Weigel and others (2013a, 2013b, 2013c), and Martens and others (2014). The second phase, initiated in 2008, focuses on the evaluation of the M2 reach (rkm 66– 80) of the mainstem Methow River prior to restoration actions planned by Reclamation and Yakama Nation. The M2 study was designed to help understand the inter-relationships between stream habitat and the life history of various fish species to explain potential success or limitations in response to restoration actions. To help document changes derived by restoration, two reference reaches (Upper Methow between rkm 85 and 90, and Chewuch River between rkm 4 and 11) were identified based on relative lack of disturbance, proximity to the restoration reach, and relative unconfined geomorphology. A control reach (Lower Methow between rkm 57 and 64, also referred to as “Silver Reach”) was 2 identified based on its similar disturbance as the reference reach, proximity to the restoration reach, and relatively unconfined geomorphology. Products to date include Barber and others (2011), Bellmore (2011), Tibbits and others (2012), Bellmore and others (2013), Benjamin and others (2013), Romine and others (2013b), Bellmore and other (2014), Martens and others (2014), and Martens and Connolly (2014). The third phase of work has been to help with the development and to provide data for modeling efforts. Most of the planned M2 reach restoration is focused on the creation or improvement of offchannel habitat, especially side channels. The pre-restoration portion of this study has been documented by Martens and Connolly (2014). Side channel restoration actions were initiated in 2012 (Whitefish Island side channel, also referred to as SC3; rkm 76) and are planned to continue over the next several years. The Whitefish Island side channel was modified to maintain hydrological connection with the mainstem throughout the year. In addition, several log structures were installed and pools were deepened to create fish habitat. Prior to restoration, this side channel would lose hydrological connection with the mainstem Methow River, leaving one large pool near the bottom of the side channel and several shallow isolated pools that may or may not go dry. In seasonally connected side channels, juvenile salmonid survival in pools less than 100 cm average depth was lower than in pools greater than 100 cm average depth (Martens and Connolly, 2014). In this report, we document our field work and analysis completed in 2013. During 2013, USGS sampling efforts were focused on resampling of three reaches in Beaver Creek, testing methodology in the Whitefish Island side channel, conducting hatchery survival estimates, and operating a screw trap on the Chewuch River (funded by Yakama Nation; fig. 1). The Beaver Creek sampling effort was a revisit of three index sites sampled continuously from 2004 to 2007 to look at the fish response to barrier removal. Methodology testing in Whitefish Island side channel was done to determine the best method for evaluating fish populations after restoration efforts in side channels (previous sampling methods were determined to be ineffective after pools were deepened). Hatchery survival estimates were completed to monitor fish survival in the Methow and Columbia Rivers, while the screw trap was operated to estimate migrating fish populations in the Chewuch River and track passive integrated transponder (PIT)-tagged fish. In addition, we maintained a network of PIT-tag interrogation systems (PTIS), assisted Reclamation with fish removal events associated with stream restoration (two people for 9 days; 14 percent of summer field season), and conducted a stream metabolism study designed to help parameterize and calibrate the stream productivity model (Bellmore and others, 2014) with model validation.

Washington↗
USGS1994

National Water-Quality Assessment Program - South-Central Texas

In 1991, the U.S. Geological Survey (USGS), Department of the Interior, began a National Water-Quality Assessment (NAWQA) Program. The long-term goals of the NAWQA Program are to describe the status of and trends in the quality of a large, representative part of the Nation's surface- and ground-water resources and to identify the major natural and human factors that affect the quality of these resources. In addressing these goals, the program will produce a wealth of water-quality information that will be useful to policymakers and managers at national, State, and local levels. The NAWQA Program emphasis is on regional water-quality problems. The program will not diminish the need for smaller studies and monitoring presently designed and conducted by Federal, State, and local agencies to meet their individual needs. The NAWQA Program, however, will provide a large-area framework for conducting many of these activities and an understanding about national and regional water-quality conditions that cannot be acquired from individual, local programs and studies. Studies of 60 hydrologic systems that include parts of most major river basins and aquifer systems (study-unit investigations) are the building blocks of the national assessment. Areas of the 60 study units range in size from less than 1,000 to more than 60,000 square miles (mi 2 ) and represent 60 to 70 percent of the Nation's water use and population served by public water supplies. Twenty study-unit investigations were started in 1991, 20 additional started in 1994, and 20 are planned to start in 1997. Assessment activities in the South-Central Texas study area (see fig.) began in 1994.

Texas↗
USGS1963

Specific Yield--Column drainage and centrifuge moisture content

The specific yield of a rock or soil, with respect to water, is the ratio of (1) the volume of water which, after being saturated, it will yield by gravity to (2) its own volume. Specific retention represents the water retained against gravity drainage. The specific yield and retention when added together are equal to the total interconnected porosity of the rock or soil. Because specific retention is more easily determined than specific yield, most methods for obtaining yield first require the determination of specific retention. Recognizing the great need for developing improved methods of determining the specific yield of water-bearing materials, the U.S. Geological Survey and the California Department of Water Resources initiated a cooperative investigation of this subject. The major objectives of this research are (1) to review pertinent literature on specific yield and related subjects, (2) to increase basic knowledge of specific yield and rate of drainage and to determine the most practical methods of obtaining them, (3) to compare and to attempt to correlate the principal laboratory and field methods now commonly used to obtain specific yield, and (4) to obtain improved estimates of specific yield of water-bearing deposits in California. An open-file report, 'Specific yield of porous media, an annotated bibliography,' by A. I. Johnson, D. A. Morris, and R. C. Prill, was released in 1960 in partial fulfillment of the first objective. This report describes the second phase of the specific-yield study by the U.S. Geological Survey Hydrologic Laboratory at Denver, Colo. Laboratory research on column drainage and centrifuge moisture equivalent, two methods for estimating specific retention of porous media, is summarized. In the column-drainage study, a wide variety of materials was packed into plastic columns of 1- to 8-inch diameter, wetted with Denver tap water, and drained under controlled conditions of temperature and humidity. The effects of cleaning the porous media; of different column diameters; of dye and time on drainage; and of different methods of drainage, wetting, and packing were all determined. To insure repeatability of porosity in duplicate columns, a mechanical technique of packing was developed. In the centrifuge moisture-content study, the centrifuge moisture-equivalent (the moisture content retained by a soil that has been first saturated and then subjected to a force equal to 1,000 times the force of gravity for 1 hour) test was first reviewed and evaluated. It was determined that for reproducible moisture-retention results the temperature and humidity should be controlled by use of a controlled-temperature centrifuge. In addition to refining this standard test, the study determined the effect of length of period of centrifuging and of applied tension on the drainage results. The plans for future work require the continuation of the laboratory standardization study qith emphasis on investigation of soil-moisture tension and unsaturated-permeability techniques. A detailed study in the field then will be followed by correlation and evaluation of laboratory and field methods.

Water Supply Paper↗
USGS2020

A comparative phylogeographic approach to facilitate recovery of an imperiled freshwater mussel (Bivalvia: Unionida: Potamilus inflatus)

North American freshwaters are among the world’s most threatened ecosystems, and freshwater mussels are among the most imperiled inhabiting these systems. A critical aspect of conservation biology is delineating patterns of genetic diversity, which can be difficult when a taxon has been extirpated from a significant portion of its historical range. In such cases, evaluating conservation and recovery options may benefit by using surrogate species as proxies when assessing overall patterns of genetic diversity. Here, we integrate the premise of surrogate species into a comparative phylogeographic framework to hypothesize genetic relationships between extant and extirpated populations of Potamilus inflatus by characterizing genetic structure in co-distributed congeners with similar life histories and dispersal capabilities. Our mitochondrial and nuclear sequence data exhibited variable patterns of genetic divergence between Potamilus spp. native to the Mobile and Pascagoula + Pearl + Pontchartrain (PPP) provinces. However, hierarchical Approximate Bayesian Computation indicated that the diversification between Mobile and PPP clades was synchronous and represents a genetic signature of a common history of vicariance. Recent fluctuations in sea-level appear to have caused Potamilus spp. in the PPP to form a single genetic cluster, providing justification for using individuals from the Amite River as a source of brood stock to re-establish extirpated populations of P. inflatus. Future studies utilizing eDNA and genome-wide molecular data are essential to better understand the distribution of P. inflatus and establish robust recovery plans. Given the imperilment status of freshwater mussels globally, our study represents a useful methodology for predicting relationships among extant and extirpated populations of imperiled species.

Florida, Alabama, Mississippi, Louisiana↗
USGS1982

Design concepts for a Global Telemetered Seismograph Network

This study represents a first step in developing an integrated, real-time global seismic data acquisition system a Global Telemetered Seismograph Network (GTSN). The principal objective of the GTSN will be to acquire reliable, high-quality, real-time seismic data for rapid location and analysis of seismic events. A secondary, but important, objective of the GTSN is to augment the existing off-line seismic data base available for research. The deployment of the GTSN will involve a variety of interrelated activities development of the data acquisition and receiving equipment, establishment of satellite and terrestrial communication links, site selection and preparation, training of station personnel, equipment installation, and establishment of support facilities. It is a complex program and the development of a sound management plan will be essential. The purpose of this study is not to fix design goals or dictate avenues of approach but to develop working concepts that may be used as a framework for program planning. The international exchange of seismic data has been an important factor in the progress that has been made during the past two decades in our understanding of earthquakes and global tectonics. The seismic data base available for analysis and research is derived principally from the Global Seismograph Network (GSN), which is funded and managed by the U.S. Geological Survey (USGS). The GSN comprises some 120 seismograph stations located in more than 60 countries of the world. Established during the 1960 s with the installation of the World-Wide Standardized Seismograph Network (WWSSN) , the GSN has been augmented in recent years by the installation of more advanced data systems, such as the Seismic Research Observatories (SRO), the modified High-Gain LongPeriod (ASRO) seismographs, and the digital WWSSN (DWWSSN). The SRO, ASRO, and DWWSSN stations have the common, distinctive feature of digital data recording, so they are known collectively as the Global Digital Seismograph Network (GDSN). The fundamental objective in operating the GSN is to create and update a seismic data base that is accessible without restrictions to organizations and research scientists throughout the world. The USGS provides cooperating stations with instrumentation, training, and continuing support, including supplies and on-site maintenance. In return, the host organization operates the equipment and sends the recorded data to the USGS. Analog data (seismograms) are microfilmed and about four million copies are requested annually by researchers. Digital data, which are recorded on magnetic tape, are organized by the USGS Albuquerque Seismological Laboratory (ASL) into networkday tapes and copies of the day tapes are furnished to data users through national and regional data centers. After copying, original data are returned to the stations and used for local research. Most of the stations in the GSN also provide the USGS with seismic readings « phase arrival times and amplitudes scaled from the seismograms. These readings are transmitted on a daily or biweekly basis via commercial or diplomatic communication channels. They are used by the USGS National Earthquake Information Service (NEIS) to determine the location and magnitude of earthquakes occurring throughout the world. The results are published monthly in bulletins that are distributed to the participating stations and virtually all scientific organizations that are involved in seismological studies. It is a much-valued service that provides a current, updated catalog of seismic activity on a global scale. The NEIS also has the responsibility for rapid reporting of large and potentially destructive earthquakes. The NEIS issues news bulletins as soon as possible after the occurrence of magnitude 6.5 or greater earthquakes (magnitude 5 or greater in the conterminous United States). The news bulletins are sent to disaster relief, public safety, and other interested organizations. Tsunami warnings issued to countries bordering the Pacific Ocean are based initially on earthquake location and magnitude data. Rapid reporting of earthquakes requires real-time waveform data or readings. Currently, signals are being telemetered from more than thirty stations in the United States to the NEIS, which is located in Golden, Colorado. An extension of the telemetry network to other countries will provide the seismological community with a significantly improved means of monitoring earthquake activity in real time; it will lower the response time for determining the location and magnitude of potentially destructive or tsunamigenic earthquakes and it will provide more timely information that may be needed by governments to respond promptly.

Open-File Report↗
USGS2009

The spatial and temporal variability of groundwater recharge in a forested basin in northern Wisconsin

Recharge varies spatially and temporally as it depends on a wide variety of factors (e.g. vegetation, precipitation, climate, topography, geology, and soil type), making it one of the most difficult, complex, and uncertain hydrologic parameters to quantify. Despite its inherent variability, groundwater modellers, planners, and policy makers often ignore recharge variability and assume a single average recharge value for an entire watershed. Relatively few attempts have been made to quantify or incorporate spatial and temporal recharge variability into water resource planning or groundwater modelling efforts. In this study, a simple, daily soil-water balance model was developed and used to estimate the spatial and temporal distribution of groundwater recharge of the Trout Lake basin of northern Wisconsin for 1996-2000 as a means to quantify recharge variability. For the 5 years of study, annual recharge varied spatially by as much as 18 cm across the basin; vegetation was the predominant control on this variability. Recharge also varied temporally with a threefold annual difference over the 5-year period. Intra-annually, recharge was limited to a few isolated events each year and exhibited a distinct seasonal pattern. The results suggest that ignoring recharge variability may not only be inappropriate, but also, depending on the application, may invalidate model results and predictions for regional and local water budget calculations, water resource management, nutrient cycling, and contaminant transport studies. Recharge is spatially and temporally variable, and should be modelled as such. Copyright ?? 2009 John Wiley & Sons, Ltd.

Hydrological Processes↗
USGS2018

Climate change implications for irrigation and groundwater in the Republican River Basin, U.S.A.

This study investigates the influence of climate change on groundwater availability, and thereby, irrigation across political boundaries within the United States’ High Plains aquifer. A regression model is developed to predict changes in irrigation according to predicted changes in precipitation and temperature from a downscaled dataset of 32 general circulation models (GCMs). Precipitation recharge changes are calculated with precipitation-recharge curves developed for prognostic representations of precipitation across the Nebraska-Colorado-Kansas area and within the Republican River Basin focal landscape. Irrigation-recharge changes are scaled with changes in irrigation. The groundwater responses to climate forcings are then simulated under new pumping and recharge rates using a MODFLOW groundwater flow model. Results show that groundwater pumping and recharge both will increase and that the effects of groundwater pumping will overshadow those from natural fluctuations. Groundwater levels will decline more in areas with irrigation-driven decreasing trends in the baseline. The methodologies and predictions of this study can inform long-term water planning and the design of management strategies that help avoid and resolve water-related conflicts, enabling irrigation sustainability.

Colorado, Kansas, Nebraska↗
USGS2014

Predicting impacts of future human population growth and development on occupancy rates of forest-dependent birds

Forest loss and fragmentation are among the largest threats to forest-dwelling wildlife species today, and projected increases in human population growth are expected to increase these threats in the next century. We combined spatially-explicit growth models with wildlife distribution models to predict the effects of human development on 5 forest-dependent bird species in Vermont, New Hampshire, and Massachusetts, USA. We used single-species occupancy models to derive the probability of occupancy for each species across the study area in the years 2000 and 2050. Over half a million new housing units were predicted to be added to the landscape. The maximum change in housing density was nearly 30 houses per hectare; however, 30% of the towns in the study area were projected to add less than 1 housing unit per hectare. In the face of predicted human growth, the overall occupancy of each species decreased by as much as 38% (ranging from 19% to 38% declines in the worst-case scenario) in the year 2050. These declines were greater outside of protected areas than within protected lands. Ninety-seven percent of towns experienced some decline in species occupancy within their borders, highlighting the value of spatially-explicit models. The mean decrease in occupancy probability within towns ranged from 3% for hairy woodpecker to 8% for ovenbird and hermit thrush. Reductions in occupancy probability occurred on the perimeters of cities and towns where exurban development is predicted to increase in the study area. This spatial approach to wildlife planning provides data to evaluate trade-offs between development scenarios and forest-dependent wildlife species.

Biological Conservation↗