Search USGSSearch

SEARCH · Search USGS

Results for “MICROscope”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 397 records · Page 22Linked to original sources

Maps showing mineralogical and geochemical data for heavy-mineral concentrates in the Tanacross quadrangle, Alaska

This series of maps showing the following data for heavy mineral concentrates: distribution and abundance of selected ore-related minerals, distribution and abundance of copper in the magnetic fraction, and distribution and abundance of lead, copper, tin, beryllium, tungsten and bismuth in the nonmagnetic fraction. The data are plotted on base maps showing generalized geology, base metal prospects in the Yukon-Tanana Upland, and the drainage pattern. The distribution and abundance of ore-related minerals (fig. A) were obtained by microscopic examination of the heavy-mineral concentrates. The number of mineral grains observed is shown in the map explanation. Figures B through H are geochemical maps showing the distribution and abundance of metals as determined by six-step semi-quantitative emission spectrography. The geochemical map symbols show sample sites and the actual values for the element in the sample as determined by spectrography. An explanation of sampling, preparation, and analytical procedure is given in Circular 734 which accompanies this folio. Complete analytical data for geochemical samples collected by the U.S. Geological Survey in the Tanacross quadrangle are available in an open-file report (O'Leary and others, 1976).

Alaska

Maps showing mineralogical data for nonmagnetic heavy-mineral concentrates in the Talkeetna Quadrangle, Alaska

Reconnaissance geochemical and mineralogical sampling was done in the Talkeetna Quadrangle during 1975 and 1976 as part of the Alaska Mineral Resource Assessment Program (AMRAP). These maps show the distribution of gold, scheelite, chalcopyrite, arsenopyrite, galena, fluorite, cinnabar, and malachite in the nonmagnetic fraction of heavy-mineral concentrates. Heavy-mineral concentrate samples were collected at 812 sites from active stream channels. The heavy-mineral concentrates were obtained by panning stream sediment in the field to remove most of the light minerals. The panned samples were then sieved through a 20-mesh (0.8 mm) sieve in the laboratory, and the minus-20-mesh fraction was further separated with bromoform (specific gravity, 2.86) to remove any remaining light-mineral grains. Magnetite and other strongly magnetic heavy minerals were removed from the heavy-mineral fraction by use of a hand magnet. The remaining sample was passed through a Frantz Isodynamic Separator and a nonmagnetic fraction was examined for its mineralogical content with the aid of a binocular microscope and an x-ray diffractometer. The nonmagnetic concentrates primarily contain phyllite fragments, muscovite, sphene, zircon, apatite, tourmaline, rutile, and anatase. Most ore and ore-related minerals also occur in this fraction.

Alaska

Mineralogical map showing the distribution and abundance of gold, scheelite, chalcopyrite, arsenopyrite, minium, and sapphire corundum in heavy-mineral concentrates in the Seward and Blying Sound quadrangles, Alaska

Reconnaissance geochemical and mineralogical sampling was done in the Seward and Blying Sound quadrangles during 1975 and 1976 as part of the Alaska Mineral Resources Assessment Program (AMRAP). These maps show the distribution and abundance of gold, scheelite, chalcopyrite, arsenopyrite, minium and sapphire corundum in heavy-mineral concentrates. Heavy-mineral concentrate samples were collected at 525 sites from active channels and, locally, from the interface of streambeds with intermediate- to low-tide beaches. The heavy-mineral concentrates were obtained by panning stream sediments in the field to remove most of the light minerals. The panned samples were sieved though a 20-mesh (0.8 mm) screen in the laboratory, and the minus-20 mesh fraction was further separated with bromoform (specific gravity: 2.86) to remove any remaining light-mineral grains. Magnetite and other strongly magnetic heavy minerals were removed from the heavy-mineral fraction by using a hand magnet. The remaining sample was passed through a Frantz Isodynamic Separator 1 and a nonmagnetic fraction was obtained at a setting of 0.6 amperes. A split of this nonmagnetic fraction was examined for its mineralogic content using a binocular microscope and X-ray diffraction. The nonmagnetic concentrates primarily contain muscovite, sphene, zircon, apatite, rutile, and anatase. Small amounts of other minerals such as gold, scheelite, minium, sapphire corundum, and most sulfides will also be found in this fraction. 1 The use of trade names is for descriptive purposes only and does not constitute endorsement of those products by the U.S. Geological Survey.

Alaska

Lahar-hazard zonation for San Miguel volcano, El Salvador

San Miguel volcano, also known as Chaparrastique, is one of many volcanoes along the volcanic arc in El Salvador. The volcano, located in the eastern part of the country, rises to an altitude of about 2130 meters and towers above the communities of San Miguel, El Transito, San Rafael Oriente, and San Jorge. In addition to the larger communities that surround the volcano, several smaller communities and coffee plantations are located on or around the flanks of the volcano, and the PanAmerican and coastal highways cross the lowermost northern and southern flanks of the volcano. The population density around San Miguel volcano coupled with the proximity of major transportation routes increases the risk that even small volcano-related events, like landslides or eruptions, may have significant impact on people and infrastructure. San Miguel volcano is one of the most active volcanoes in El Salvador; it has erupted at least 29 times since 1699. Historical eruptions of the volcano consisted mainly of relatively quiescent emplacement of lava flows or minor explosions that generated modest tephra falls (erupted fragments of microscopic ash to meter sized blocks that are dispersed into the atmosphere and fall to the ground). Little is known, however, about prehistoric eruptions of the volcano. Chemical analyses of prehistoric lava flows and thin tephra falls from San Miguel volcano indicate that the volcano is composed dominantly of basalt (rock having silica content <53%), similar to the lava erupted by Hawaiian volcanoes. The chemical composition of eruptive products and the lack of evidence of large cataclysmic eruptions suggests that prehistoric eruptions probably were similar in nature to the historical eruptions. Unlike San Salvador and San Vicente volcanoes, San Miguel volcano does not appear to have had a history of violent explosive eruptions.

El Transito;San Jorge;San Miguel;San Rafael Orient

Abstracts of the annual Planetary Geologic Mappers Meeting, June 18-19, 2001, Albuquerque, New Mexico

The annual Planetary Geologic Mappers Meeting serves two purposes. In addition to giving mappers the opportunity to exchange ideas, experiences, victories, and problems with others, presentations are reviewed by the Geologic Mapping Subcommittee (GeMS) to provide input to the Planetary Geology and Geophysics Mapping Program review panel’s consideration of new proposals and progress reports that include mapping tasks. Funded mappers bring both oral presentation materials (slides or viewgraphs) and map products to post for review by GeMS and fellow mappers. Additionally, the annual meetings typically feature optional field trips offering earth analogs and parallels to planetary mapping problems. The 2001 Mappers Meeting, June 18-19, was convened by Tim Parker, Dave Senske, and Ken Tanaka and was hosted by Larry Crumpler and Jayne Aubele of the New Mexico Museum of Natural History and Science in Albuquerque, New Mexico. Oral presentations were given in the Museum’s Honeywell Auditorium, and maps were posted in the Sandia Room. In addition to active mappers, guests included local science teachers who had successfully competed for the right to attend and listen to the reports. It was a unique pleasure for mappers to have the opportunity to interact with and provide information to teachers responding so enthusiastically to the meeting presentation. On Sunday, June 17, Larry and Jayne conducted an optional pre-meeting field trip. The flanks of Rio Grande Rift, east and west of Albuquerque and Valles Caldera north of town presented tectonic, volcanic, and sedimentary examples of the Rift and adjoining areas analogous to observed features on Mars and Venus. The arid but volcanically and tectonically active environment of New Mexico’s rift valley enables focus on features that appear morphologically young and spectacular in satellite images and digital relief models. The theme of the trip was to see what, at orbiter resolution, "obvious" geologic features look like at lander (outcrop) scales. Trips to the top of the rift-flanking mountains (Sandia Peak, 10,600 ft) and the Valles Caldera, as well as various active spring deposits highlighted the day. After welcoming remarks from the host, Larry Crumpler, opening remarks by Tim Parker and Dave Senske and a report on mapping program status by Ken Tanaka, the mappers’ oral presentations began the morning of June 18, with a session on Venus Geologic Mapping. The afternoon continued with an exciting USGS Planetary GIS on the Web (PIGWAD) demonstration and ended with an open discussion of issues in planetary mapping. Posted maps of Venus quadrangles were viewed during the morning break. Tuesday’s Mars Geologic Mapping session began with a pep talk from Tim Parker encouraging mapping community input to the MER landing site selection committee and continued with Steve Saunders describing the potential contribution of Odyssey Mission data to the geologic mapping of Mars. A Mars map poster session was held during the morning break, and the meeting was adjourned mid-afternoon. After the mappers meeting on Tuesday, attendants were treated to a "Field trip to Mars." The Institute of Meteoritics at the University of New Mexico houses an outstanding collection of meteorites, including those that have been identified as originating from Mars. The Institute tour featured examples of most of the different lithologies exhibited by martian meteorites identified to date, as well as some of the analytical tests (scanning electron microscope) they are conducting on specimens from ALH84001. Wednesday, June 20, featured an optional post-meeting field trip to see a travertine quarry and nearby sites of travertine deposition, the Very Large Array near Socorro, and other volcanic features within the Rio Grande Rift.

New Mexico

Preliminary geochemical, microbiological, and epidemiological investigations into possible linkages between lignite aquifers, pathogenic microbes, and kidney disease in northwestern Louisiana

In May 2002, 15 wells and four surface water sites were sampled, and in September 2002, those same wells and sites plus four additional surface sites were sampled in five parishes of northwestern Louisiana. A geographic information system (GIS) was used to select residential water wells for sampling. Well water samples were analyzed for pH, conductivity, organic compounds, and nutrient and anion concentrations. All samples were further tested for presence of fungi (maintained for up to 28 days and colonies counted and identified microscopically), and metal and trace element concentration by inductively-coupled plasma mass spectrometry and atomic emission spectrometry. Surface water samples were tested for dissolved oxygen and evidence of leptospiral bacterial presence. A polymerase chain reaction protocol was optimized for detection of pathogenic leptospires, and the sensitivity of the assay was determined. The Spearman correlation method was used to assess the association between the endpoints for these field/laboratory analyses and the incidence of cancer of the renal pelvis obtained from the Louisiana Tumor Registry. Significant associations were revealed between the cancer rate and the overall number of organic compounds, the fungi Zygomycetes, the nutrients PO4 and NH3, and thirteen chemical elements (As, B, Br, Cl, Cr, F, Li, Na, P, Rb, Se, Sr, W) from the well water as compared to the controls. Among the species of fungi from the total of 136 isolates were 12 Penicillium spp., at least two Aspergillus spp., a number of other genera (Alternaria sp., Eupenicillium lapidosum, Cladosporium sp., Epicoccum sp., Trichoderma sp., Paecilomyces sp., Chrysosporium sp., Chloridium sp.), and Zygomycetes, and Coelmycetes -- some of which are known mycotoxin producers. The two control wells yielded a mean of 6.5 (SD = 3.5355) individual isolates, while the mean number of isolates from all other sites was 7.6 (SD = 4.4866). Presence of human pathogenic leptospires was detected in 4/8 (50 percent) of the surface water sites sampled. These initial results suggest that additional investigation into these relationships is warranted.

Open-File Report

Spectral reflectance properties (0.4-2.5 um) of secondary Fe-oxide, Fe-hydroxide, and Fe-sulfate-hydrate minerals associated with sulfide-bearing mine waste

Fifteen Fe-oxide, Fe-hydroxide, and Fe-sulphate-hydrate mineral species commonly associated with sulphide bearing mine wastes were characterized by using X-ray powder diffraction and scanning electron microscope methods. Diffuse reflectance spectra of the samples show diagnostic absorption features related to electronic processes involving ferric and/or ferrous iron, and to vibrational processes involving water and hydroxyl ions. Such spectral features enable field and remote sensing based studies of the mineral distributions. Because secondary minerals are sensitive indicators of pH, Eh, relative humidity, and other environmental conditions, spectral mapping of these minerals promises to have important applications to mine waste remediation studies. This report releases digital (ascii) spectra (spectral_data_files.zip) of the fifteen mineral samples to facilitate usage of the data with spectral libraries and spectral analysis software. The spectral data are provided in a two-column format listing wavelength (in micrometers) and reflectance, respectively.

Open-File Report

Cenozoic Antarctic DiatomWare/BugCam: An aid for research and teaching

Cenozoic Antarctic DiatomWare/BugCam© is an interactive, icon-driven digital-image database/software package that displays over 500 illustrated Cenozoic Antarctic diatom taxa along with original descriptions (including over 100 generic and 20 family-group descriptions). This digital catalog is designed primarily for use by micropaleontologists working in the field (at sea or on the Antarctic continent) where hard-copy literature resources are limited. This new package will also be useful for classroom/lab teaching as well as for any paleontologists making or refining taxonomic identifications at the microscope. The database (Cenozoic Antarctic DiatomWare) is displayed via a custom software program (BugCam) written in Visual Basic for use on PCs running Windows 95 or later operating systems. BugCam is a flexible image display program that utilizes an intuitive thumbnail “tree” structure for navigation through the database. The data are stored on Micrsosoft EXCEL spread sheets, hence no separate relational database program is necessary to run the package

Open-File Report

Examination of Libby, Montana, Fill Material for Background Levels of Amphibole from the Rainy Creek Complex Using Scanning Electron Microscopy and X-Ray Microanalysis

Natural background levels of Libby-type amphibole in the sediment of the Libby valley in Montana have not, up to this point, been determined. The purpose of this report is to provide the preliminary findings of a study designed by both the U.S. Geological Survey and the U.S. Environmental Protection Agency and performed by the U.S. Geological Survey. The study worked to constrain the natural background levels of fibrous amphiboles potentially derived from the nearby Rainy Creek Complex. The material selected for this study was sampled from three localities, two of which are active open-pit sand and gravel mines. Seventy samples were collected in total and examined using a scanning electron microscope equipped with an energy dispersive x-ray spectrometer. All samples contained varying amounts of feldspars, ilmenite, magnetite, quartz, clay minerals, pyroxene minerals, and non-fibrous amphiboles such as tremolite, actinolite, and magnesiohornblende. Of the 70 samples collected, only three had detectable levels of fibrous amphiboles compatible with those found in the rainy creek complex. The maximum concentration, identified here, of the amphiboles potentially from the Rainy Creek Complex is 0.083 percent by weight.

Open-File Report

Microphotographs of cyanobacteria documenting the effects of various cell-lysis techniques

Cyanotoxins are a group of organic compounds biosynthesized intracellularly by many species of cyanobacteria found in surface water. The United States Environmental Protection Agency has listed cyanotoxins on the Safe Drinking Water Act's Contaminant Candidate List 3 for consideration for future regulation to protect public health. Cyanotoxins also pose a risk to humans and other organisms in a variety of other exposure scenarios. Accurate and precise analytical measurements of cyanotoxins are critical to the evaluation of concentrations in surface water to address the human health and ecosystem effects. A common approach to total cyanotoxin measurement involves cell membrane disruption to release the cyanotoxins to the dissolved phase followed by filtration to remove cellular debris. Several methods have been used historically, however no standard protocols exist to ensure this process is consistent between laboratories before the dissolved phase is measured by an analytical technique for cyanotoxin identification and quantitation. No systematic evaluation has been conducted comparing the multiple laboratory sample processing techniques for physical disruption of cell membrane or cyanotoxins recovery. Surface water samples collected from lakes, reservoirs, and rivers containing mixed assemblages of organisms dominated by cyanobacteria, as well as laboratory cultures of species-specific cyanobacteria, were used as part of this study evaluating multiple laboratory cell-lysis techniques in partnership with the U.S. Environmental Protection Agency. Evaluated extraction techniques included boiling, autoclaving, sonication, chemical treatment, and freeze-thaw. Both treated and untreated samples were evaluated for cell membrane integrity microscopically via light, epifluorescence, and epifluorescence in the presence of a DNA stain. The DNA stain, which does not permeate live cells with intact membrane structures, was used as an indicator for cyanotoxin release into the dissolved phase. Of the five techniques, sonication (at 70 percent) was most effective at complete cell destruction while QuikLyse (Trademarked) was least effective. Autoclaving, boiling, and sequential freeze-thaw were moderately effective in physical destruction of colonies and filaments.

Open-File Report

Procedures for conducting underwater searches for invasive mussels (Dreissena sp.)

Zebra mussels (Dreissena polymorpha) were first detected in the Great Lakes in 1988. They were likely transported as larvae or young adults inside the ballast tanks of large ocean-going ships originating from Europe. Since their introduction, they have spread throughout the Eastern, Midwestern, and Southern United States. In 2007, Quagga mussels (Dreissena rostriformis bugensis) were found in the Western United States in Lake Mead, Nevada; part of the Lower Colorado River Basin. State and Federal managers are concerned that the mussels (hereafter referred to as dreissenid mussels or mussels) will continue to spread to the Columbia River Basin and have a major impact on the region?s ecosystem, water delivery infrastructure, hydroelectric projects, and the economy. The transport and use of recreational watercraft throughout the Western United States could easily result in spreading mussels to the Columbia River Basin. The number of recreational watercraft using Lake Mead can range from 350 to 3,500 a day (Bryan Moore, National Park Service, oral commun., June 21, 2008). Because recreational watercrafts are readily moved around and mussels may survive for a period of time when they are out of the water, there is a high potential to spread mussels from Lake Mead to other waterways in the Western United States. Efforts are being made to prevent the spread of mussels; however, there is great concern that these efforts will not be 100 percent successful. When prevention efforts fail, early detection of mussels may provide an opportunity to implement rapid response management actions to minimize the impact. Control and eradication efforts are more likely to be successful if they are implemented when the density of mussels is low and the area of infestation is small. Once the population grows and becomes established, the mussels are extremely difficult, if not impossible, to control. Although chemicals may be used to kill the mussels, the chemicals that are currently available also can kill other aquatic life. Early implementation of containment and eradication efforts requires getting reliable information to confirm the location of the infestation. One way to get this information is through the use of properly trained SCUBA divers. This document provides SCUBA divers with the necessary information to conduct underwater searchers for mussels. However, using SCUBA divers to search for mussels over a large geographic area is relatively expensive and inefficient. Early detection monitoring methods can be used to optimize the use of SCUBA divers. Early detection monitoring can be accomplished by collecting water samples or deploying artificial settlement substrates (fig. 1). Water samples are used to look for free-swimming larval mussels (called veligers). Because the veligers cannot be identified with the naked eye, the water samples are sent to a laboratory where they are examined under a microscope and/or analyzed using molecular techniques to detect veligers. To detect the presences of adult mussels, artificial substrates are deployed and periodically retrieved to determine if mussels have settled on the substrate. If veligers or adults are identified, SCUBA divers can be deployed to confirm the presence of mussels.

Open-File Report

Monitoring of wild fish health at selected sites in the Great Lakes Basin: methods and preliminary results

During fall 2010 and spring 2011, a total of 119 brown bullhead ( Ameiurus nebulosus ), 136 white sucker ( Catostomus commersoni ), 73 smallmouth bass ( Micropterus dolomieu ), and 59 largemouth bass ( M. salmoides ) were collected from seven Great Lakes Basin Areas of Concern and one Reference Site. Comprehensive fish health assessments were conducted in order to document potential adverse affects from exposure to complex chemical mixtures. Fish were necropsied on site, blood samples obtained, pieces of liver, spleen, kidney, gill and any abnormalities placed in fixative for histopathology. Liver samples were saved for gene expression analysis and otoliths were removed for aging. A suite of fish health indicators was developed and implemented for site comparisons and to document seasonal effects and species differences in response to environmental conditions. Organism level (grossly visible lesions, condition factor), tissue level (microscopic pathology, organosomatic indices, micronuclei, and other nuclear abnormalities), plasma factors (reproductive steroid hormones, vitellogenin), and molecular (gene expression) indicators were included. This report describes the methods and preliminary results.

Great Lakes Basin

Assessment of the fish tumor beneficial use impairment in brown bullhead ( Ameiurus nebulosus ) at selected Great Lakes Areas of Concern

A total of 878 adult Brown Bullhead were collected at 11 sites within the Lake Erie and Lake Ontario drainages from 2011 to 2013. The sites included seven Areas of Concern (AOC; 670 individuals), one delisted AOC (50 individuals) and three non-AOC sites (158 individuals) used as reference sites. These fish were used to assess the “fish tumor or other deformities” beneficial use impairment. Fish were anesthetized, weighed, measured and any external abnormalities documented and removed. Abnormal orocutaneous and barbel tissue, as well as five to eight pieces of liver, were preserved for histopathological analyses. Otoliths were removed and used for age analyses. Visible external abnormalities included reddened (raised or eroded), melanistic areas and raised growths on lips, body surface, fins and barbels. Microscopically, these raised growths included papilloma, squamous cell carcinoma, osteoma and osteosarcoma. Proliferative lesions of the liver included bile duct hyperplasia, foci of cellular alteration, bile duct (cholangioma, cholangiocarcinoma) and hepatocellular (adenoma, hepatic cell carcinoma) neoplasia. The two reference sites (Long Point Inner Bay, Conneaut Creek), at which 30 or more bullhead were collected had a skin tumor prevalence of 10% or less and liver tumor prevalence of 4% or less. Presque Isle Bay, recently delisted, had a similar liver tumor prevalence (4%) and slightly higher prevalence (12%) of skin tumors. The prevalence of skin neoplasms was 15% or less at sites in the Black River, Cuyahoga River and Maumee AOCs, while more than 20% of the bullheads from the Rochester Embayment, Niagara River, Detroit River and Ashtabula River AOCs had skin tumors. The prevalence of liver tumors was greater than 4% at all AOC sites except the Old Channel site at the Cuyahoga River AOC, Wolf Creek within the Maumee AOC and the upper and lower sites within the Niagara River AOC.

Great Lakes;Lake Erie;Lake Ontario

Gallery of melt textures developed in Westerly Granite during high-pressure triaxial friction experiments

Introduction Melting occurred during stick-slip faulting of granite blocks sheared at room-dry, room-temperature conditions in a triaxial apparatus at 200–400 megapascals (MPa) confining pressure. Petrographic examinations of melt textures focused largely on the 400-MPa run products. This report presents an overview of the petrographic data collected on those samples, followed by brief descriptions of annotated versions of all the images. Scanning electron microscope (SEM) images of the starting materials and the three examined 400-MPa samples are presented in this report. Secondary-electron (SE) and backscattered-electron (BSE) imaging techniques were used on different samples. The SE images look down on the sawcut surfaces, yielding topographic and three-dimensional textural information. The BSE imaging was done on samples cut to provide cross-sectional views of the glass-filled shear band (or zone) that developed along the sawcut. Brightness in the BSE images increases with increasing mean atomic number of the material. Additional chemical information about the quenched melt and adjoining minerals was obtained using the energy dispersive system of the SEM during BSE examinations. However, the very narrow shear-band thicknesses and common occurrence of very fine lamellar compositional layering limited the usefulness of this technique for estimating melt chemistry.

Open-File Report

Hurricane Sandy washover deposits on Fire Island, New York

Washover deposits on Fire Island, New York, from Hurricane Sandy in 2012 were investigated a year after the storm to document the sedimentary characteristics of hurricane washover features. Sediment data collected in the field includes stratigraphic descriptions and photos from trenches, bulk sediment samples, U-channels, and gouge and push cores. Samples and push cores were further analyzed in the laboratory for grain size, density variations using x-ray computed tomography (CT), and surface microtexture using a scanning electron microscope (SEM). Elevation profiles of washover features were measured using Differential Global Positioning System (DGPS) with Real Time Kinematic processing. The DGPS elevations were compared to lidar (light detection and ranging) data from pre- and post-Sandy surveys to assess the degree to which washover deposit thicknesses changed within the year following deposition. Hurricane Sandy washover deposits as much as 1 meter thick were observed in trenches. Initial results show that the upper parts of the deposits have been reworked significantly in some places by wind, but there are still areas where the deposits are almost entirely intact. Where mostly intact, the washover deposits consist of massive or weakly laminated sand near the base, overlain by more strongly laminated sands.

New York

Channel mapping river miles 29–62 of the Colorado River in Grand Canyon National Park, Arizona, May 2009

Bathymetric, topographic, and grain-size data were collected in May 2009 along a 33-mi reach of the Colorado River in Grand Canyon National Park, Arizona. The study reach is located from river miles 29 to 62 at the confluence of the Colorado and Little Colorado Rivers. Channel bathymetry was mapped using multibeam and singlebeam echosounders, subaerial topography was mapped using ground-based total-stations, and bed-sediment grain-size data were collected using an underwater digital microscope system. These data were combined to produce digital elevation models, spatially variable estimates of digital elevation model uncertainty, georeferenced grain-size data, and bed-sediment distribution maps. This project is a component of a larger effort to monitor the status and trends of sand storage along the Colorado River in Grand Canyon National Park. This report documents the survey methods and post-processing procedures, digital elevation model production and uncertainty assessment, and procedures for bed-sediment classification, and presents the datasets resulting from this study.

Arizona

Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom

The Lake Okeechobee and the Okeechobee Waterway (Lake Okeechobee, the St. Lucie Canal and River, and the Caloosahatchee River) experienced an extensive harmful algal bloom within Lake Okeechobee, the St. Lucie Canal and River and the Caloosahatchee River in 2016. In addition to the very visible bloom of the cyanobacterium Microcystis aeruginosa , several other cyanobacteria were present. These other species were less conspicuous; however, they have the potential to produce a variety of cyanotoxins, including anatoxins, cylindrospermopsins, and saxitoxins, in addition to the microcystins commonly associated with Microcystis. Some of these species were found before, during, and 2 weeks after the large Microcystis bloom and could provide a better understanding of bloom dynamics and succession. This report provides photographic documentation and taxonomic assessment of the cyanobacteria present from Lake Okeechobee and the Caloosahatchee River and St. Lucie Canal, with samples collected June 1st from the Caloosahatchee River and Lake Okeechobee and in July from the St. Lucie Canal. The majority of the images were of live organisms, allowing their natural complement of pigmentation to be captured. The report provides a digital image-based taxonomic record of the Lake Okeechobee and the Okeechobee Waterway microscopic flora. It is anticipated that these images will facilitate current and future studies on this system, such as understanding the timing of cyanobacteria blooms and their potential toxin production.

Florida

Assessing causes of mortality for endangered juvenile Lost River suckers (Deltistes luxatus) in mesocosms in Upper Klamath Lake, south-central Oregon, 2016

Executive Summary The recovery of endangered Lost River suckers ( Deltistes luxatus ) in Upper Klamath Lake, south-central Oregon, has been impeded because juveniles are not recruiting into adult spawning populations. Adult sucker populations spawn each spring but mortality of age-0 suckers during their first summer is excessively high, and recruitment of juveniles into adult populations does not occur in most years. The last significant year class to join spawning aggregations was hatched in 1991. Capture rates for age-0 Lost River suckers decrease so substantially each summer that it is thought that mortality is nearly 100 percent within the first year of life each year. Causes of mortality are not understood but poor water quality, parasites, disease, predation, and non-native species are suspected to contribute to mortality. Upper Klamath Lake is hypereutrophic and summer water-quality conditions have large diurnal and seasonal fluctuations. Photosynthesis of Aphanizomenon flos-aquae , the most abundant cyanobacterium in Upper Klamath Lake, is responsible for large fluctuations in dissolved-oxygen (DO) concentrations and pH. We introduced hatchery-raised, passive integrated transponder-tagged juvenile Lost River suckers into large mesocosms located at Fish Banks, Mid North, and Rattlesnake Point in Upper Klamath Lake, Oregon, to assess sucker mortality relative to water-quality conditions. We identified the date of death for each sucker by assessing movement patterns among vertically stratified antennas. We modeled daily mortality using known fate models relative to water-quality conditions measured by sondes. Histopathology was used to understand causes of eminent mortality for moribund suckers. Fish mortality, growth, health, and movement patterns varied among locations, but it was unclear whether this variation was due to water-quality or other factors. Seasonal mortality was 58.8 percent at Fish Banks, 27.4 percent at Mid North, and 11.5 percent at Rattlesnake Point. Growth over the 109-day study period was lowest at Fish Banks (34.5 ±10.0 millimeters [mm] standard length (SL); 18.6 ±7.7 grams [g]), intermediate at Mid North (57.5 ±13.6 mm SL; 40.1 ±15.4 g), and greatest at Rattlesnake Point (78.4 ±13.0 mm SL; 72.5 ±18.7 g). Our ability to assess causes of juvenile sucker mortality in mesocosms using our modelling approach was limited by low daily mortality. Zero to 3 mortalities occurred per day, except on July 30 at Fish Banks when 7 mortalities occurred. Relative to any other measured and tested water-quality condition, mortality was more likely to occur on days with large fluctuations in oxygen percent saturation. When we assessed the fit of the most parsimonious model, performance was poor, which suggested that other factors were contributing to mortality. Our ability to assess the relationship between seasonal patterns in water quality and fish mortality were limited by the absence of substantial differences in water quality among sites, inconsistency in the depth at which measurements were collected, and no clear pattern in conditions leading up to and during mortality events. Except for DO at Rattlesnake Point and diel temperature variations at Fish Banks, seasonally summarized water-quality factors were similar among sites. The locations of water-quality monitors within the water column likely explain the differences in DO at Rattlesnake Point and temperature variation at Fish Banks. Furthermore, DO concentrations and other water-quality factors occurring during and prior to mortality events were inconsistent. Microscopic assessments indicated severe gill hyperplasia, fusion of the secondary lamellae, and severe Ichthyobodo sp. infestations on the gills of most moribund suckers. Liver glycogen was usually depleted in suckers with severe Ichthyobodo sp. infestations. Ichthyobodo sp. infestations probably were the immediate cause of death and probably originated from the Klamath Tribes Fish Research Facility, although this parasite also is present in Upper Klamath Lake and severe water-quality conditions may have contributed to morbidity. As suckers in the mesocosms died, they were replaced with suckers from the Fish Research Facility that likely were heavily parasitized with Ichthyobodo sp. Therefore, it is possible that the gradient in mortality rate among sites was owing to site-varying differences in inadvertent increases in introduced parasite loads.

Oregon