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Towards common ground in the biodiversity–disease debate

The disease ecology community has struggled to come to consensus on whether biodiversity reduces or increases infectious disease risk, a question that directly affects policy decisions for biodiversity conservation and public health. Here, we summarize the primary points of contention regarding biodiversity–disease relationships and suggest that vector-borne, generalist wildlife and zoonotic pathogens are the types of parasites most likely to be affected by changes to biodiversity. One synthesis on this topic revealed a positive correlation between biodiversity and human disease burden across countries, but as biodiversity changed over time within these countries, this correlation became weaker and more variable. Another synthesis—a meta-analysis of generally smaller-scale experimental and field studies—revealed a negative correlation between biodiversity and infectious diseases (a dilution effect) in various host taxa. These results raise the question of whether biodiversity–disease relationships are more negative at smaller spatial scales. If so, biodiversity conservation at the appropriate scales might prevent wildlife and zoonotic diseases from increasing in prevalence or becoming problematic (general proactive approaches). Further, protecting natural areas from human incursion should reduce zoonotic disease spillover. By contrast, for some infectious diseases, managing particular species or habitats and targeted biomedical approaches (targeted reactive approaches) might outperform biodiversity conservation as a tool for disease control. Importantly, biodiversity conservation and management need to be considered alongside other disease management options. These suggested guiding principles should provide common ground that can enhance scientific and policy clarity for those interested in simultaneously improving wildlife and human health.

Nature Ecology & Evolution↗

Effects of land use and surficial geology on flow and water quality of streams in the coal-mining region of southwestern Indiana, October 1979 through September 1980

An assessment of streams in the coal-mining region of southwestern Indiana was done from October 1979 through September 1980 during stable stream flows to provide baseline hydrologic and water-quality information and to document the effect of several natural and human-induced factors on water quality in the region. Streams in southwestern Indiana are generally well buffered against acidification from acid-mine drainage because they flow upon calcareous unconsolidated surficial deposits and bedrock. The pH of streams draining forested, agricultural, and reclaimed mined watersheds ranged from 6.3 to 8.8, which is generally within the range of natural waters. The pH of streams draining unreclaimed mined watersheds ranged from 3.8 to 7.9, which was much more variable than for streams draining lands used for other activities. Concentrations of major dissolved constituents in streams affected by coal mining were significantly higher than in streams unaffected by mining. The principal cause of the elevated concentrations of dissolved constituents was the oxidation of pyrite and marcasite and subsequent dissolution of calcite and dolomite. The principal water type of streams draining forested and agricultural watersheds was calcium bicarbonate, whereas the principal water types of streams draining mined watersheds were magnesium sulfate and magnesiumcalcium sulfate. Concentrations of boron, iron, manganese, nickel, and zinc were generally higher in streams draining mined areas than in streams draining forested and agricultural watersheds. Median concentrations of iron and manganese were lower in streams draining reclaimed mined watersheds than in streams draining unreclaimed mined watersheds; this suggests that post-1967 surface-mine reclamation techniques have been effective at reducing concentrations of these metals in streams. Concentrations of aluminum, iron, manganese, nickel, and zinc increased significantly as pH decreased below 6.0 in streams draining unreclaimed mined watersheds. The elevated concentrations of metals in waters and the low pH result from the oxidation of the sulfide in pyrite to sulfate, which releases dissolved ferrous iron, other metals, and acidity into the water. Median suspended-sediment concentrations of samples from streams draining agricultural and mined watersheds were 1.5 and 5.4 times those of streams draining forested watersheds. Suspended sediment in streams was composed primarily of silt and clay-sized particles. The effect of surficial geology on stream quality was evident for several dissolved constituents in forested and agricultural watersheds. In general, pH and concentrations of alkalinity and calcium were significantly higher in streams draining the Wisconsin glacial province than in streams draining the Illinoian glacial province and unglaciated regions. The higher pH and concentrations of these constituents suggests that there is greater dissolution of carbonate minerals in the Wisconsin glacial province than the other regions. Median concentrations of arsenic, lead, and manganese for streams draining the Wisconsin glacial province were significantly lower than for those constituents in streams draining the Illinoian province and unglaciated region. The median cadmium concentration for streams draining the Wisconsin glacial province was lower than for streams draining the unglaciated region. These differences may have been due to lower solubilities of metal and trace elements at higher pH values in the Wisconsin glacial province than in the Illinoian glacial province and the unglaciated region.

Indiana↗

Karst in evaporite rocks of the United States

Evaporites are the most soluble of common rocks; they are dissolved readily to form the same range of karst features that typically are found in limestones and dolomites. Evaporites, including gypsum (or anhydrite) and salt, are present in 32 of the 48 contiguous United States, and they underlie about 35-40% of the land area. Evaporite outcrops typically contain sinkholes, caves, disappearing streams, and springs. Other evidence of active karst in evaporites includes surface-collapse features and saline springs or saline plumes that result from dissolution of salt. Many evaporites, including some in the deeper subsurface, also contain evidence of paleokarst that is no longer active; this evidence includes dissolution breccias, breccia pipes, slumped beds, and collapse structures. Evaporites occur in 24 separate structural basins or geographic districts in the United States, and either local or extensive evaporite karst is known in almost all of these basins or districts. Human activities also have caused development of evaporite karst, primarily in salt deposits. Boreholes or underground mines may enable (either intentionally or inadvertently) unsaturated water to flow through or against salt deposits, thus allowing development of small to large dissolution cavities. If the dissolution cavity is large enough and shallow enough, successive roof failures can cause land subsidence or catastrophic collapse. Evaporite karst, both natural and human-induced, is far more prevalent than commonly believed.

Carbonates and Evaporites↗

Applying ecological criteria to marine reserve design: A case study from the California Channel Islands

Using ecological criteria as a theoretical framework, we describe the steps involved in designing a network of marine reserves for conservation and fisheries management. Although we describe the case study of the Channel Islands, the approach to marine reserve design may be effective in other regions where traditional management alone does not sustain marine resources. A group of agencies, organizations, and individuals established clear goals for marine reserves in the Channel Islands, including conservation of ecosystem biodiversity, sustainable fisheries, economic viability, natural and cultural heritage, and education. Given the constraints of risk management, experimental design, monitoring, and enforcement, scientists recommended at least one, but no more than four, reserves in each biogeographic region. In general, the percentage of an area to be included in a reserve network depends on the goals. In the Channel Islands, after consideration of both conservation goals and the risk from human threats and natural catastrophes, scientists recommended reserving an area of 30–50% of all representative habitats in each biogeographic region. For most species of concern, except pinnipeds and seabirds, information about distributions, dispersal, and population growth was limited. As an alternative to species distribution information, suitable habitats for species of concern were used to locate potential reserve sites. We used a simulated annealing algorithm to identify potential reserve network scenarios that would represent all habitats within the smallest area possible. The analysis produced an array of potential reserve network scenarios that all met the established goals.

California↗

Dams and Rivers: A Primer on the Downstream Effects of Dams

The U.S. Geological Survey is charged with monitoring the water and mineral resources of the United States. Beginning in 1889, the Survey established a network of water gaging stations across most of the country's rivers; some also measured sediment content of the water. Consequently, we now have valuable long-term data with which to track water supply, sediment transport, and the occurrence of floods. Many variables affect the flow of water from mountain brook to river delta. Some are short-term perturbations like summer thunderstorms. Others occur over a longer period of time, like the El Ninos that might be separated by a decade or more. We think of these variables as natural occurrences, but humans have exerted some of the most important changes -- water withdrawals for agriculture, inter-basin transfers, and especially the construction of an extensive system of dams. Dams have altered the flow of many of the Nation's rivers to meet societal needs. We expect floods to be contained. Irrigation is possible where deserts once existed. And water is released downstream not according to natural cycles but as dictated by a region's hour-by-hour needs for water or electricity. As a result, river channels below dams have changed dramatically. Depending on annual flow, flood peaks, and a river's sediment load, we might see changes such as sand building up in one channel, vegetation crowding into another, and extensive bank erosion in another. This Circular explores the emerging scientific arena of change in rivers below dams. This science tries first to understand and then anticipate changes to river beds and banks, and to riparian habitats and animal communities. To some degree, these downstream changes can be influenced by specific strategies of dam management. Scientists and resource managers have a duty to assemble this information and present it without bias to the rest of society. Society can then more intelligently choose a balance between the benefits and adverse downstream effects of dams.

Circular↗

Projected carbon stocks in the conterminous USA with land use and variable fire regimes

The dynamic global vegetation model (DGVM) MC2 was run over the conterminous USA at 30 arc sec (~800 m) to simulate the impacts of nine climate futures generated by 3GCMs (CSIRO, MIROC and CGCM3) using 3 emission scenarios (A2, A1B and B1) in the context of the LandCarbon national carbon sequestration assessment. It first simulated potential vegetation dynamics from coast to coast assuming no human impacts and naturally occurring wildfires. A moderate effect of increased atmospheric CO 2 on water use efficiency and growth enhanced carbon sequestration but did not greatly influence woody encroachment. The wildfires maintained prairie‐forest ecotones in the Great Plains. With simulated fire suppression, the number and impacts of wildfires was reduced as only catastrophic fires were allowed to escape. This greatly increased the expansion of forests and woodlands across the western USA and some of the ecotones disappeared. However, when fires did occur, their impacts (both extent and biomass consumed) were very large. We also evaluated the relative influence of human land use including forest and crop harvest by running the DGVM with land use (and fire suppression) and simple land management rules. From 2041 through 2060, carbon stocks (live biomass, soil and dead biomass) of US terrestrial ecosystems varied between 155 and 162 Pg C across the three emission scenarios when potential natural vegetation was simulated. With land use, periodic harvest of croplands and timberlands as well as the prevention of woody expansion across the West reduced carbon stocks to a range of 122–126 Pg C, while effective fire suppression reduced fire emissions by about 50%. Despite the simplicity of our approach, the differences between the size of the carbon stocks confirm other reports of the importance of land use on the carbon cycle over climate change.

Global Change Biology↗

Prediction of the probability of elevated nitrate concentrations at groundwater depths used for drinking-water supply in the Puget Sound basin, Washington, 2004–19

The Puget Sound basin encompasses the 13,700-square-mile area that drains to the Puget Sound and the adjacent marine waters of Washington State. Well more than 4 million people live within the basin, with numbers continuing to increase, who rely on the basin’s natural resources including groundwater. The Puget Sound Partnership was created by a Washington State statute to implement a science-based recovery of the Puget Sound to help address impacts to these resources. As part of the recovery, the partnership developed the Puget Sound Vital Signs as measures of ecosystem health that guide the assessment of progress toward Puget Sound recovery goals. The Puget Sound Partnership Leadership Council adopted a Drinking Water Vital Sign associated with human health and quality of life, recognizing certain indicators as integral to the sustainability of Puget Sound recovery efforts. One such Vital Sign indicator was the vulnerability of groundwater throughout the aquifers of the Puget Sound basin to elevated nitrate concentrations as defined by the probability of exceeding 2 milligrams/liter (mg/L) at a specific location and well depth. The U.S. Geological Survey (USGS) led the effort to characterize groundwater vulnerability. For this study, groundwater vulnerability refers to a probability with which a contaminant applied at or near the land surface can migrate to the aquifer of interest for a given set of land-use practices. Nitrate concentration data were selected for evaluation because elevated nitrate concentrations are typically caused by anthropogenic activities and have been associated with deleterious impacts on human health. To identify groundwater vulnerability to elevated nitrate concentrations, logistic regression was used to relate anthropogenic (human associated) and natural variables to the occurrence of elevated nitrate concentrations in untreated groundwater from large public water supply system wells found within the Washington State Department of Health Sentry database. Variables that were analyzed included well depth, soil hydraulic conductivity, precipitation, population density, fertilizer application amounts, and land-use types. Statistically significant models that predicted the probabilities of groundwater nitrate concentrations greater than 2 mg/L based on the predictor variables were created for the time periods 2000–04, 2005–09, 2010–14, and 2015–19. For all time periods, well depth and a measure of the abundance of urban and agricultural land over or near the well consistently helped explain the vulnerability of the well to elevated nitrate concentrations defined as a probability of exceeding 2 mg/L of nitrate. Precipitation and (or) soil hydraulic conductivity were also important predictor variables in the models. The models for each time period were used to create maps of groundwater vulnerability at 150- and 300-foot depths throughout the Puget Sound basin. As expected, the most vulnerable locations were associated with shallower well depths and increased agriculture and urban land cover. Across all four time periods, groundwater vulnerability throughout the Puget Sound was low, with probabilities of exceeding 2 mg/L concentrations of nitrate at depths at 150 and 300 feet typically less than 50 percent. Results also found a slight decrease in probabilities of elevated nitrate concentrations throughout the basin over time. More specifically, additional statistical tests found that groundwater with probabilities of less than about 60 percent declined from 2000 to 2019 and represented more than 75 percent of the modeled Puget Sound basin aquifer. Wells with greater than 60 percent probability increased over the same time period but represented only about 25 percent of the aquifer. The maps and statistical analysis presented in the study provide valuable and informative evaluation of the vulnerability of groundwater in the Puget Sound basin to elevated nitrate concentrations. The probability maps do not represent measured nitrate concentrations in groundwater, but rather they present the probability that nitrate concentrations exceed 2 mg/L. The models and predictions from this study are a viable indicator for the Puget Sound Partnership’s Healthy Human Population—Drinking Water Vital Sign. The logistic regression modeling approach presented here benefits water managers by allowing them to assess temporal trends in a range of probabilities, explore vulnerability changes as new regional land cover and anthropogenic data are generated, and distinguish vulnerabilities at different depths within the aquifer.

Washington↗

Shallow ground-water quality beneath rice areas in the Sacramento Valley, California, 1997

In 1997, the U.S. Geological Survey installed and sampled 28 wells in rice areas in the Sacramento Valley as part of the National Water-Quality Assessment Program. The purpose of the study was to assess the shallow ground-water quality and to determine whether any effects on water quality could be related to human activities and particularly rice agriculture. The wells installed and sampled were between 8.8 and 15.2 meters deep, and water levels were between 0.4 and 8.0 meters below land surface. Ground-water samples were analyzed for 6 field measurements, 29 inorganic constituents, 6 nutrient constituents, dissolved organic carbon, 86 pesticides, tritium (hydrogen- 3), deuterium (hydrogen-2), and oxygen-18. At least one health-related state or federal drinking-water standard (maximum contaminant or long-term health advisory level) was exceeded in 25 percent of the wells for barium, boron, cadmium, molybdenum, or sulfate. At least one state or federal secondary maximum contaminant level was exceeded in 79 percent of the wells for chloride, iron, manganese, specific conductance, or dissolved solids. Nitrate and nitrite were detected at concentrations below state and federal 2000 drinking-water standards; three wells had nitrate concentrations greater than 3 milligrams per liter, a level that may indicate impact from human activities. Ground-water redox conditions were anoxic in 26 out of 28 wells sampled (93 percent). Eleven pesticides and one pesticide degradation product were detected in ground-water samples. Four of the detected pesticides are or have been used on rice crops in the Sacramento Valley (bentazon, carbofuran, molinate, and thiobencarb). Pesticides were detected in 89 percent of the wells sampled, and rice pesticides were detected in 82 percent of the wells sampled. The most frequently detected pesticide was the rice herbicide bentazon, detected in 20 out of 28 wells (71 percent); the other pesticides detected have been used for rice, agricultural, and non-agricultural purposes. All pesticide concentrations were below state and federal 2000 drinking-water standards. The relation of the ground-water quality to natural processes and human activities was tested using statistical methods (Spearman rank correlation, Kruskal?Wallis, or rank-sum tests) to determine whether an influence from rice land-use or other human activities on ground-water chemistry could be identified. The detection of pesticides in 89 percent of the wells sampled indicates that human activities have affected shallow ground-water quality. Concentrations of dissolved solids and inorganic constituents that exceeded state or federal 2000 drinking-water standards showed a statistical relation to geomorphic unit. This is interpreted as a relation to natural processes and variations in geology in the Sacramento River Basin; the high concentrations of dissolved solids and most inorganic constituents did not appear to be related to rice land use. No correlation was found between nitrate concentration and pesticide occurrence, indicating that an absence of high nitrate concentrations is not a predictor of an absence of pesticide contamination in areas with reducing ground-water conditions in the Sacramento Valley. Tritium concentrations, pesticide detections, stable isotope data, and dissolved-solids concentrations suggest that shallow ground water in the ricegrowing areas of the Sacramento Valley is a mix of recently recharged ground water containing pesticides, nitrate, and tritium, and unknown sources of water that contains high concentrations of dissolved solids and some inorganic constituents and is enriched in oxygen-18. Evaporation of applied irrigation water, which leaves behind salt, accounts for some of the elevated concentrations of dissolved solids. More work needs to be done to understand the connections between the land surface, shallow ground water, deep ground water, and the drinking-water supplies in the Sacramento Valley.

Water-Resources Investigations Report↗

An opportunity and an imperative: Chapter 11 in United States-Mexican Borderlands: Facing tomorrow's challenges through USGS science

Along the nearly 3,200 kilometers (almost 2,000 miles) of the United States–Mexican border, we are witnessing the expression of the challenges of the 21st century. The Borderlands have become a microcosm for the entire United States and Mexico; the issues faced in that region are felt throughout both nations—water availability and quality, ecosystem health, natural resource needs, safety from natural hazards, and human socioeconomic well-being. If these issues were not challenging enough, we now recognize that the difficulties of addressing them are exacerbated by the onset of climate change, and as we come to better understand the complexities of the components of these challenge themes, we discover that each part is inextricably intertwined with other overarching issues. Further, because we are a creative and progressive society, we all seek to understand and appreciate the natural environments associated with the Borderlands while at the same time benefitting from the region’s many social and economic values. It is little wonder that we as a society find it increasingly difficult to ask the right questions, much less find suitable answers to the questions we do ask. For the many scientists who have worked in the Borderlands and contributed to the preceding chapters, this circular is a way to describe to the two nations of the region the capabilities the U.S. Geological Survey can provide to assist in that quest for knowledge and understanding in preparation for the future.

United States-Mexico Borderlands↗

Benchmarking high-resolution hydrologic model performance of long-term retrospective streamflow simulations in the contiguous United States

Because use of high-resolution hydrologic models is becoming more widespread and estimates are made over large domains, there is a pressing need for systematic evaluation of their performance. Most evaluation efforts to date have focused on smaller basins that have been relatively undisturbed by human activity, but there is also a need to benchmark model performance more comprehensively, including basins impacted by human activities. This study benchmarks the long-term performance of two process-oriented, high-resolution, continental-scale hydrologic models that have been developed to assess water availability and risks in the United States (US): the National Water Model v2.1 application of WRF-Hydro (NWMv2.1) and the National Hydrologic Model v1.0 application of the Precipitation–Runoff Modeling System (NHMv1.0). The evaluation is performed on 5390 streamflow gages from 1983 to 2016 ( ∼ 33 years) at a daily time step, including both natural and human-impacted catchments, representing one of the most comprehensive evaluations over the contiguous US. Using the Kling–Gupta efficiency as the main evaluation metric, the models are compared against a climatological benchmark that accounts for seasonality. Overall, the model applications show similar performance, with better performance in minimally disturbed basins than in those impacted by human activities. Relative regional differences are also similar: the best performance is found in the Northeast, followed by the Southeast, and generally worse performance is found in the Central and West areas. For both models, about 80 % of the sites exceed the seasonal climatological benchmark. Basins that do not exceed the climatological benchmark are further scrutinized to provide model diagnostics for each application. Using the underperforming subset, both models tend to overestimate streamflow volumes in the West, which could be attributed to not accounting for human activities, such as active management. Both models underestimate flow variability, especially the highest flows; this was more pronounced for NHMv1.0. Low flows tended to be overestimated by NWMv2.1, whereas there were both over and underestimations for NHMv1.0, but they were less severe. Although this study focused on model diagnostics for underperforming sites based on the seasonal climatological benchmark, metrics for all sites for both model applications are openly available online.

Hydrology and Earth System Sciences↗

Hydrogeology and water quality of the Mississippi River alluvium near Muscatine, Iowa, June 1992 through June 1994

A study of the Mississippi River alluvium near Muscatine, Iowa, was conducted to evaluate ground-water flow and water quality using data collected from June 1992 through June 1994. The study area included approximately 80 square miles in parts of Muscatine and Louisa Counties in Iowa and Rock Island and Mercer Counties in Illinois. A steady-state, ground-water flow model was constructed using February 1993 hydrologic conditions. Model results indicate that drawdown in the lower alluvium caused by the pumping centers in Iowa extends beneath the Muscatine Slough in the northwest part of the study area and beneath the Mississippi River in the central and northern parts of the area. The primary sources of ground water in the alluvium are recharge from precipitation, leakage from the Mississippi River, and infiltration of upland runoff. The bedrock is not a major contributor of ground water to the alluvium. The areal distribution of selected water-quality properties and constituents in ground water results from several factors. Localized large chloride and nitrite-plus-nitrate nitrogen concentrations could be indicative of contamination from human activity. Specific conductance and calcium, magnesium, and sulfate concentrations are larger in ground water near the boundary between the river valley and upland area and could result from infiltration of upland runoff or lithologic differences in the alluvium. Large iron or manganese concentrations occur in the ground water near the Mississippi River and Muscatine Slough that result from microbial processes and the presence of dissolved organic carbon. Temporal variations of concentrations for selected water-quality constituents in groundwater samples attest to the dynamic nature of the ground-water system as it responds to natural and human-induced changes in water quality. Leakage from the Mississippi River affects ground-water quality in the alluvium adjacent to the river. Temporal variations in water quality of the Mississippi River can be caused by seasonally, amount of discharge, or upstream human activities. The quality of ground water induced from discrete zones of the alluvium by the pumping centers in Iowa has implications for the entire ground-water resource. The ground-water flow model calculated that 10 percent of the water that enters the zone of active pumping on the Iowa side of the Mississippi River originates from the zone west and north of Muscatine Slough, and that 5.2 percent originates from the zone on the Illinois side of the Mississippi River east of the center of the river channel.

Illinois, Iowa↗

Preface paper to the Semi-Arid Land-Surface-Atmosphere (SALSA) Program special issue

The Semi-Arid Land-Surface-Atmosphere Program (SALSA) is a multi-agency, multi-national research effort that seeks to evaluate the consequences of natural and human-induced environmental change in semi-arid regions. The ultimate goal of SALSA is to advance scientific understanding of the semi-arid portion of the hydrosphere-biosphere interface in order to provide reliable information for environmental decision making. SALSA approaches this goal through a program of long-term, integrated observations, process research, modeling, assessment, and information management that is sustained by cooperation among scientists and information users. In this preface to the SALSA special issue, general program background information and the critical nature of semi-arid regions is presented. A brief description of the Upper San Pedro River Basin, the initial location for focused SALSA research follows. Several overarching research objectives under which much of the interdisciplinary research contained in the special issue was undertaken are discussed. Principal methods, primary research sites and data collection used by numerous investigators during 1997-1999 are then presented. Scientists from about 20 US, five European (four French and one Dutch), and three Mexican agencies and institutions have collaborated closely to make the research leading to this special issue a reality. The SALSA Program has served as a model of interagency cooperation by breaking new ground in the approach to large scale interdisciplinary science with relatively limited resources.

Conference Paper↗

Maps of estimated nitrate and arsenic concentrations in basin-fill aquifers of the southwestern United States

Human-health concerns and economic considerations associated with meeting drinking-water standards motivated a study of the vulnerability of basin-fill aquifers to nitrate contamination and arsenic enrichment in the southwestern United States. Statistical models were developed by using the random forest classifier algorithm to predict concentrations of nitrate and arsenic across a model grid representing about 190,600 square miles of basin-fill aquifers in parts of Arizona, California, Colorado, Nevada, New Mexico, and Utah. The statistical models, referred to as classifiers, reflect natural and human-related factors that affect aquifer vulnerability to contamination and relate nitrate and arsenic concentrations to explanatory variables representing local- and basin-scale measures of source and aquifer susceptibility conditions. Geochemical variables were not used in concentration predictions because they were not available for the entire study area. The models were calibrated to assess model accuracy on the basis of measured values. Only 2 percent of the area underlain by basin-fill aquifers in the study area was predicted to equal or exceed the U.S. Environmental Protection Agency drinking-water standard for nitrate as N (10 milligrams per liter), whereas 43 percent of the area was predicted to equal or exceed the standard for arsenic (10 micrograms per liter). Areas predicted to equal or exceed the drinking-water standard for nitrate include basins in central Arizona near Phoenix; the San Joaquin Valley, the Santa Ana Inland, and San Jacinto Basins of California; and the San Luis Valley of Colorado. Much of the area predicted to equal or exceed the drinking-water standard for arsenic is within a belt of basins along the western portion of the Basin and Range Physiographic Province that includes almost all of Nevada and parts of California and Arizona. Predicted nitrate and arsenic concentrations are substantially lower than the drinking-water standards in much of the study area-about 93 percent of the area underlain by basin-fill aquifers was less than one-half the standard for nitrate as N (5.0 milligrams per liter), and 50 percent was less than one-half the standard for arsenic (5.0 micrograms per liter). The predicted concentrations and the improved understanding of the susceptibility and vulnerability of southwestern basin-fill aquifers to nitrate contamination and arsenic enrichment can be used by water managers as a qualitative tool to assess and protect the quality of groundwater resources in the Southwest.

Arizona, California, Colorado, Idaho, Nevada, New ↗

Predicted nitrate and arsenic concentrations in basin-fill aquifers of the Southwestern United States

The National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey (USGS) is conducting a regional analysis of water quality in the principal aquifer systems across the United States. The Southwest Principal Aquifers (SWPA) study is building a better understanding of the susceptibility and vulnerability of basin-fill aquifers in the region to groundwater contamination by synthesizing baseline knowledge of groundwater-quality conditions in 16 basins previously studied by the NAWQA Program. The improved understanding of aquifer susceptibility and vulnerability to contamination is assisting in the development of tools that water managers can use to assess and protect the quality of groundwater resources. Human-health concerns and economic considerations associated with meeting drinking-water standards motivated a study of the vulnerability of basin-fill aquifers to nitrate con­tamination and arsenic enrichment in the southwestern United States. Statistical models were developed by using the random forest classifier algorithm to predict concentrations of nitrate and arsenic across a model grid that represents about 190,600 square miles of basin-fill aquifers in parts of Arizona, California, Colorado, Nevada, New Mexico, and Utah. The statistical models, referred to as classifiers, reflect natural and human-related factors that affect aquifer vulnerability to contamina­tion and relate nitrate and arsenic concentrations to explana­tory variables representing local- and basin-scale measures of source, aquifer susceptibility, and geochemical conditions. The classifiers were unbiased and fit the observed data well, and misclassifications were primarily due to statistical sampling error in the training datasets. The classifiers were designed to predict concentrations to be in one of six classes for nitrate, and one of seven classes for arsenic. Each classification scheme allowed for identification of areas with concentrations that were equal to or exceeding the U.S. Environmental Protection Agency drinking-water standard. Whereas 2.4 percent of the area underlain by basin-fill aquifers in the study area was predicted to equal or exceed this standard for nitrate (10 milligrams per liter as N; mg/L), 42.7 percent was predicted to equal or exceed the standard for arsenic (10 micrograms per liter; μg/L). Areas predicted to equal or exceed the drinking-water standard for nitrate include basins in central Arizona near Phoenix; the San Joaquin, Inland, and San Jacinto basins of California; and the San Luis Valley of Colorado. Much of the area predicted to equal or exceed the drinking-water standard for arsenic is within a belt of basins along the western portion of the Basin and Range Physiographic Province in Nevada, California, and Arizona. Predicted nitrate and arsenic concentrations are substantially lower than the drinking-water standards in much of the study area—about 93.0 percent of the area underlain by basin-fill aquifers was less than one-half the standard for nitrate (5.0 mg/L), and 50.2 percent was less than one-half the standard for arsenic (5.0 μg/L).

Arizona, California, Colorado, Nevada, New Mexico,↗

Native plants for effective coastal wetland restoration

Plant communities, along with soils and appropriate water regimes, are essential components of healthy wetland systems. In Louisiana, the loss of wetland habitat continues to be an issue of major concern. Wetland loss is caused by several interacting factors, both natural and human-induced (e.g., erosion and saltwater intrusion from the construction of canals and levees). Recent estimates of annual coastal land loss rates of about 62 km2 (24 mi2 ) over the past decade emphasize the magnitude of this problem. In an attempt to slow the rate of loss and perhaps halt the overall trend, resource managers in Louisiana apply various techniques to restore damaged or degraded habitats to functioning wetland systems. Researchers at the U.S. Geological Survey’s National Wetlands Research Center (NWRC) have cooperated with the Louisiana Department of Natural Resources in studies that address effective restoration strategies for coastal wetlands. The studies have identified differences in growth that naturally exist in native Louisiana wetland plant species and genetic varieties (i.e., clones) within species. Clones of a species have a distinctive genetic identity, and some clones may also have distinctive growth responses under various environmental conditions (i.e., preferences). Indeed, large areas of coastal marsh are typically populated by several clones of a plant species, each growing in a microenvironment suited to its preferences. These studies will provide information that will assist resource managers in selecting plant species and clones of species with known growth characteristics that can be matched to environmental conditions at potential restoration sites. Before the studies began, a collection of several clones from four plant species native to coastal Louisiana was established. The species collected included saltgrass (Distichlis spicata), common reed (Phragmites australis), giant bulrush (Schoenoplectus californicus), and saltmarsh bulrush (Schoenoplectus robustus). Plants connected by roots were collected from public lands across the coastal zone, and then allowed to grow several months and produce new stems and plants from underground stems called “rhizomes.” These procedures maintained the genetic identity of the clones and allowed the plants to adjust to greenhouse conditions before experimental treatments began.

Fact Sheet↗

Large carbon isotope fractionation associated with oxidation of methyl halides by methylotrophic bacteria

The largest biological fractionations of stable carbon isotopes observed in nature occur during production of methane by methanogenic archaea. These fractionations result in substantial (as much as ≈70‰) shifts in δ 13 C relative to the initial substrate. We now report that a stable carbon isotopic fractionation of comparable magnitude (up to 70‰) occurs during oxidation of methyl halides by methylotrophic bacteria. We have demonstrated biological fractionation with whole cells of three methylotrophs (strain IMB-1, strain CC495, and strain MB2) and, to a lesser extent, with the purified cobalamin-dependent methyltransferase enzyme obtained from strain CC495. Thus, the genetic similarities recently reported between methylotrophs, and methanogens with respect to their pathways for C 1 -unit metabolism are also reflected in the carbon isotopic fractionations achieved by these organisms. We found that only part of the observed fractionation of carbon isotopes could be accounted for by the activity of the corrinoid methyltransferase enzyme, suggesting fractionation by enzymes further along the degradation pathway. These observations are of potential biogeochemical significance in the application of stable carbon isotope ratios to constrain the tropospheric budgets for the ozone-depleting halocarbons, methyl bromide and methyl chloride. Methyl bromide (MeBr) and methyl chloride (MeCl) are, respectively, the most abundant volatile bromo- and chlorocarbons in the troposphere and are major contributors to stratospheric ozone destruction (1). Both compounds have natural and human-influenced sources and a predominant sink by reaction with OH in the troposphere (2–4). MeBr also has a bacterial soil sink (5) that represents about 20% of the estimated total removal from the troposphere, and it is likely that a soil sink of similar magnitude exists for MeCl (6). Hence, if an isotopic fractionation is associated with the soil sink, it will influence the isotopic compositions of MeBr and MeCl in the lower atmosphere (7). The δ 13 C value of industrially produced MeBr ranges between −43.5‰ and −66.4‰ (7), but δ 13 C values of tropospheric MeBr and natural sources are not yet known. The δ 13 C of atmospheric MeCl has been measured from −22‰ to −45‰ (8, 9). If carbon isotope ratios are to be used to constrain the budgets of these methyl halides, it is essential to determine the extent of carbon isotope fractionation that occurs during biological degradation of these compounds. Methylotrophic bacteria use C 1 compounds, which are simple organic molecules that contain no carbon–carbon bonds. Strains IMB-1, CC495, and MB2 are as-yet-unnamed facultative methylotrophs isolated from agricultural soil, woodland leaf litter, and coastal seawater, respectively (10–13), environments where methyl halides are produced. They are members of the α subgroup of the Proteobacteria . On the basis of 16S rRNA gene sequences, strains IMB-1 and CC495 show some phylogenetic alignment with the genus Rhizobium (10, 11) and are very closely related to the new genus Pseudoaminobacte r (I. McDonald, personal communication). Strain MB2 aligns within the Ruegeria clade [J. K. Schaefer, K. D. Goodwin, I. R. McDonald, J. C. Murrell and R.S.O., unpublished work]. All of these aerobic bacteria are methylotrophs in that they can grow by using MeBr or MeCl as their sole carbon source, but they do not metabolize methane. They oxidize MeBr, MeCl, and methyl iodide (MeI) to CO 2 . Soil bacteria are known to consume MeBr at the ambient tropospheric mixing ratio of around 10 parts per trillion by volume (5). Preliminary experiments with strain IMB-1 indicate that it can oxidize MeBr at these mixing ratios** and is therefore likely to be characteristic of bacteria associated with MeBr uptake by soils. We examined δ 13 C of MeCl, MeBr, and MeI during oxidation by whole-cell suspensions of IMB-1 and CC495 and also the change in δ 13 C values of the three methyl halides during oxidation by the marine strain MB2. In addition, we measured the fractionation of carbon isotopes during formation of methane thiol (MeSH) from MeCl by the purified cobalamin-dependent enzyme, halomethane:bisulphide/halide ion methyltransferase (11) from CC495, to determine whether this initial step in MeCl degradation could account for the observed fractionation by whole cells. Finally, we determined the fractionation associated with the degradation of MeBr during field studies with agricultural soil by monitoring MeBr concentration and δ 13 C of MeBr in the headspace of flux chambers under fumigation conditions.

Proceedings of the National Academy of Sciences of↗

Ecological impacts of winter water level drawdowns on lake littoral zones: A review

Freshwater littoral zones harbor diverse ecological communities and serve numerous ecosystem functions that are controlled, in part, by natural water level fluctuations. However, human alteration of lake hydrologic regimes beyond natural fluctuations threaten littoral zone ecological integrity. One type of hydrologic alteration in lakes is winter water level drawdowns, which are frequently employed for hydropower, flood control, and macrophyte control, among other purposes. Here, we synthesize the abiotic and biotic responses to annual and novel winter water level drawdowns in littoral zones of lakes and reservoirs. The dewatering, freezing, and increased erosion of exposed lakebeds drive changes in the littoral zone. Shoreline-specific physicochemical conditions such as littoral slope and shoreline exposure further induce modifications. Loss of fine sediment decreases nutrient availability over time, but desiccation may promote a temporary nutrient pulse upon re-inundation. Annual winter drawdowns can decrease taxonomic richness of macrophytes and benthic invertebrates and shift assemblage composition to favor taxa with r-selected life history strategies and with functional traits resistant to direct and indirect drawdown effects. Fish assemblages, though less directly affected by winter drawdowns (except where there is critically low dissolved oxygen), experience negative effects via indirect pathways like decreased food resources and spawning habitat. We identify eight general research gaps to guide future research that could improve our understanding about the complex effects of winter drawdowns on littoral zone ecology.

Aquatic Sciences↗

Environmentalism and natural aggregate mining

Sustaining a developed economy and expanding a developing one require the use of large volumes of natural aggregate. Almost all human activity (commercial, recreational, or leisure) is transacted in or on facilities constructed from natural aggregate. In our urban and suburban worlds, we are almost totally dependent on supplies of water collected behind dams and transported through aqueducts made from concrete. Natural aggregate is essential to the facilities that produce energy—hydroelectric dams and coal-fired powerplants. Ironically, the utility created for mankind by the use of natural aggregate is rarely compared favorably with the environmental impacts of mining it. Instead, the empty quarries and pits are seen as large negative environmental consequences. At the root of this disassociation is the philosophy of environmentalism, which flavors our perceptions of the excavation, processing, and distribution of natural aggregate. The two end-member ideas in this philosophy are ecocentrism and anthropocentrism. Ecocentrism takes the position that the natural world is a organism whose arteries are the rivers—their flow must not be altered. The soil is another vital organ and must not be covered with concrete and asphalt. The motto of the ecocentrist is “man must live more lightly on the land.” The anthropocentrist wants clean water and air and an uncluttered landscape for human use. Mining is allowed and even encouraged, but dust and noise from quarry and pit operations must be minimized. The large volume of truck traffic is viewed as a real menace to human life and should be regulated and isolated. The environmental problems that the producers of natural aggregate (crushed stone and sand and gravel) face today are mostly difficult social and political concerns associated with the large holes dug in the ground and the large volume of heavy truck traffic associated with quarry and pit operations. These concerns have increased in recent years as society's demand for living space has encroached on the sites of production; in other words, the act of production has engendered condemnation. Many other environmental problems that are associated with dust and noise and blasting from quarry and pit operations have been reduced through the efficient use of technology. Recycling concrete in buildings, bridges, and roads and asphaltic pavements will ultimately reduce the demand for virgin natural aggregate. The impact created by the large holes in the ground required for the mining of natural aggregate can be greatly reduced by planning their reclamation before mining begins.

Natural Resources Research↗