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At least 397 records · Page 22Linked to original sources

USGS2016

Spatial and temporal variability of contaminants within estuarine sediments and native Olympia oysters: A contrast between a developed and an undeveloped estuary

Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from industrial, municipal, and urban lands, accidental spills, and atmospheric deposition. The diversity of potential sources contributes to the likelihood of contaminated marine waters and sediments and increases the probability of uptake by marine organisms. Despite widespread recognition of direct and indirect pathways for contaminant deposition and organismal exposure in coastal systems, spatial and temporal variability in contaminant composition, deposition, and uptake patterns are still poorly known. We investigated these patterns for a suite of persistent legacy contaminants including polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) and chemicals of emerging concern including pharmaceuticals within two Oregon coastal estuaries (Coos and Netarts Bays). In the more urbanized Coos Bay, native Olympia oyster ( Ostrea lurida ) tissue had approximately twice the number of PCB congeners at over seven times the total concentration, yet fewer PBDEs at one-tenth the concentration as compared to the more rural Netarts Bay. Different pharmaceutical suites were detected during each sampling season. Variability in contaminant types and concentrations across seasons and between species and media (organisms versus sediment) indicates the limitation of using indicator species and/or sampling annually to determine contaminant loads at a site or for specific species. The results indicate the prevalence of legacy contaminants and CECs in relatively undeveloped coastal environments highlighting the need to improve policy and management actions to reduce contaminant releases into estuarine and marine waters and to deal with legacy compounds that remain long after prohibition of use. Our results point to the need for better understanding of the ecological and human health risks of exposure to the diverse cocktail of pollutants and harmful compounds that will continue to leach from estuarine sediments over time.

Oregon↗

USGS2025

Phytoplankton biomass dynamics in wet (2019) and dry (2023) years in Lake Pontchartrain estuary, Louisiana from Sentinel 2-MSI and PACE-OCI observations

This study provides a comprehensive assessment of phytoplankton biomass dynamics in Lake Pontchartrain, Louisiana, by combining monthly water quality data with multispectral and hyperspectral satellite observations using a machine learning algorithm. A machine learning model based on Variational Autoencoder (VAE), globally applicable, was used to estimate phytoplankton biomass via chlorophyll- a (Chl- a ) from Sentinel 2-MSI and NASA's new hyperspectral mission, PACE-OCI, enabling the first direct comparison between the two sensors. The model performed well in this complex estuarine system, with higher accuracy from PACE-OCI (MAE: 1.48, RMSE: 10.40, slope: 0.87) than Sentinel 2-MSI (MAE: 1.57, RMSE: 11.08, slope: 0.83). This approach enabled continuous high-resolution monitoring of phytoplankton biomass across space and time. Comparative analysis of 2019, a wet year with Bonnet Carré Spillway (BCS) openings, and 2023, a dry year with extremely low riverine inputs, revealed distinct biomass dynamics. In 2019, BCS discharge initially suppressed Chl- a within turbid waters (<5 mg Chl- a m −3 ) but later acted as a nutrient and hydrodynamic driver, transporting nutrients toward the lake outlet and Mississippi coast, promoting high biomass (25–45 mg Chl- a m −3 ) near the entrance. In contrast, dry conditions in 2023 led to more frequent-than-expected high biomass (>35 mg Chl- a m −3 ), persisting in the lake center. Similar spatial patterns were observed again in 2024, revealed for the first time by PACE-OCI. This study demonstrates the value of satellite-derived observations for capturing transient phytoplankton biomass events and highlights the potential of PACE-OCI's hyperspectral capabilities to better distinguish phytoplankton communities and improve understanding of their responses to freshwater inflows and associated processes driving pulses into estuaries.

Louisiana↗

USGS2001

The importance of propagule establishment and physical factors in mangrove distributional patterns in a Costa Rican estuary

Establishment of Laguncularia racemosa , Avicennia germinans , and A . bicolor was measured along intertidal gradients (mud bank (MB), lower intertidal (LI), and upper intertidal (UI)) on point bars and islands in a Costa Rican tropical estuary. Successful establishment showed the following order — Laguncularia : LI (73%)>MB (52%)>UI (18%), with UI significantly lower than LI and MB; Avicennia spp.: LI (66%)>UI (51%)>MB (29%), with LI significantly higher than MB. Establishment of Laguncularia in UI was significantly lower than Avicennia spp. due to selective crab herbivory. After 25 days, 52% of Laguncularia propagules were eaten compared to 5% for Avicennia spp. Total mortality of Laguncularia propagules and seedlings was significantly higher than that of Avicennia spp. in all three zones. The hydrological regime affected propagule establishment under controlled mesocosm conditions. Four hydrological treatments included flooded according to tidal cycle (FT), no flooding (NF), continuous flooding (F), and flooded according to tidal cycle with propagules additionally buried (FTB). Laguncularia establishment under NF (93%) and F (84%) was significantly greater than under FT (63%). A. germinans establishment under NF (97%) was greater than under FT (69%). Laguncularia showed significantly higher establishment than A. germinans under F conditions. Laguncularia propagules sank soon after their radicles protruded (5–8 days), and subsequently established under water. A. germinans propagules floated during the 25-day experiment and never established. Propagule establishment under FTB was greater for Laguncularia than for Avicennia (11 and 1%, respectively). Height increase of established Laguncularia seedlings was significantly different among treatments: FT (5.2 mm per day)>NF (3.4 mm per day)>F (2.4 mm per day). Growth of established A. germinans seedlings did not differ between FT (4.8 mm per day) and NF (5.0 mm per day), but it was significantly higher than Laguncularia under NF. These results show that both genera can successfully establish on the lower intertidal zone when artificially retained. However, propagule buoyancy, availability, dispersal, and the effect of water movement on propagule anchoring limit Avicennia spp. establishment in this regularly flooded environment. In the upper intertidal zone, however, differential predation on Laguncularia propagules favors Avicennia spp. establishment and dominance.

Bebedero River, Gulf of Nicoya, Tempisque River↗

USGS1998

Fish community changes in the St. Louis River estuary, Lake Superior, 1989-1996: Is it ruffe or population dynamics?

Ruffe ( Gymnocephalus cernuus ) have been implicated in density declines of native species through egg predation and competition for food in some European waters where they were introduced. Density estimates for ruffe and principal native fishes in the St. Louis River estuary (western Lake Superior) were developed for 1989 to 1996 to measure changes in the fish community in response to an unintentional introduction of ruffe. During the study, ruffe density increased and the densities of several native species decreased. The reductions of native stocks to the natural population dynamics of the same species from Chequamegon Bay, Lake Superior (an area with very few ruffe) were developed, where there was a 24-year record of density. Using these data, short- and long-term variations in catch and correlations among species within years were compared, and species-specific distributions were developed of observed trends in abundance of native fishes in Chequamegon Bay indexed by the slopes of densities across years. From these distributions and our observed trend-line slopes from the St. Louis River, probabilities of measuring negative change at the magnitude observed in the St. Louis River were estimated. Compared with trends in Chequamegon Bay, there was a high probability of obtaining the negative slopes measured for most species, which suggests natural population dynamics could explain, the declines rather than interactions with ruffe. Variable recruitment, which was not related to ruffe density, and associated density-dependent changes in mortality likely were responsible for density declines of native species.

Journal of Great Lakes Research↗

USGS2003

Use of retrospective data to assess ecotoxicological monitoring needs for terrestrial vertebrates residing in Atlantic coast estuaries

The “Contaminant Exposure and Effects–Terrestrial Vertebrates” (CEE-TV) database contains 4,336 records of ecotoxicological information for free-ranging amphibians, reptiles, birds, and mammals residing in Atlantic and Florida Gulf coast estuaries and their drainages. To identify spatial data gaps, those CEE-TV records for which the specific study location were known ( n =2,740) were combined with watershed and wildlife management unit boundaries using Geographic Information Systems software. The US Environmental Protection Agency's Index of Watershed Indicators (IWI), which classifies watersheds based on water quality and their vulnerability to pollution, was used to prioritize these data gaps. Of 136 watersheds in the study area, 15 that are classified by the IWI as having water quality problems or high vulnerability to pollution lacked terrestrial vertebrate ecotoxicological monitoring or research in the past decade. Older studies within some of these watersheds documented high levels of contaminants in wildlife tissues. Of 90 National Wildlife Refuge units, 42 without current data fall within watersheds of concern. Of 40 National Park units larger than 1 km 2 , 17 without current data fall within watersheds of concern. Issues encountered in this analysis highlighted the need for spatially and temporally replicated field monitoring programs that utilize random sampling. Without data from such studies, it will be difficult to perform unbiased assessments of regional trends in contaminant exposure and effects in terrestrial vertebrates.

Ecotoxicology↗

USGS2002

Potential effects of global warming on the Sacramento/San Joaquin watershed and the San Francisco estuary

California's primary hydrologic system, the San Francisco estuary and its upstream watershed, is vulnerable to the regional hydrologic consequences of projected global climate change. Projected temperature anomalies from a global climate model are used to drive a combined model of watershed hydrology and estuarine dynamics. By 2090, a projected temperature increase of 2.1°C results in a loss of about half of the average April snowpack storage, with greatest losses in the northern headwaters. Consequently, spring runoff is reduced by 5.6 km 3 (&sim;20% of historical annual runoff), with associated increases in winter flood peaks. The smaller spring flows yield spring/summer salinity increases of up to 9 psu, with larger increases in wet years.

California↗

USGS2018

The role of the upper tidal estuary in wetland blue carbon storage and flux

Carbon (C) standing stocks, C mass balance, and soil C burial in tidal freshwater forested wetlands (TFFW) and TFFW transitioning to low‐salinity marshes along the upper estuary are not typically included in “blue carbon” accounting, but may represent a significant C sink. Results from two salinity transects along the tidal Waccamaw and Savannah rivers of the US Atlantic Coast show total C standing stocks were 321‐1264 Mg C ha ‐1 among all sites, generally shifting to greater soil storage as salinity increased. Carbon mass balance inputs (litterfall, woody growth, herbaceous growth, root growth, surface accumulation) minus C outputs (surface litter and root decomposition, gaseous C) over a period of up to 11 years were 340‐900 g C m ‐2 yr ‐1 . Soil C burial was variable (7‐337 g C m ‐2 yr ‐1 ), and lateral C export was estimated as C mass balance minus soil C burial as 267‐849 g C m ‐2 yr ‐1 . This represents a large amount of C export to support aquatic biogeochemical transformations. Despite reduced C persistence within emergent vegetation, decomposition of organic matter, and higher lateral C export, total C storage increased as forests converted to marsh with salinization. These tidal river wetlands exhibited high N mineralization in salinity‐stressed forested sites and considerable P mineralization in low salinity marshes. Large C standing stocks and rates of C sequestration suggest that TFFW and oligohaline marshes are considerably important globally to coastal C dynamics and in facilitating energy transformations in areas of the world in which they occur.

Georgia, South Carolina↗

USGS2018

Hydrologic controls of methane dynamics in karst subterranean estuaries

Karst subterranean estuaries (KSEs) extend into carbonate platforms along 12% of all coastlines. A recent study has shown that microbial methane (CH 4 ) consumption is an important component of the carbon cycle and food web dynamics within flooded caves that permeate KSEs. In this study, we obtained high‐resolution (~2.5‐day) temporal records of dissolved methane concentrations and its stable isotopic content (δ 13 C) to evaluate how regional meteorology and hydrology control methane dynamics in KSEs. Our records show that less methane was present in the anoxic fresh water during the wet season (4,361 ± 89 nM) than during the dry season (5,949 ± 132 nM), suggesting that the wet season hydrologic regime enhances mixing of methane and other constituents into the underlying brackish water. The δ 13 C of the methane (−38.1 ± 1.7‰) in the brackish water was consistently more 13 C‐enriched than fresh water methane (−65.4 ± 0.4‰), implying persistent methane oxidation in the cave. Using a hydrologically based mass balance model, we calculate that methane consumption in the KSE was 21–28 mg CH 4 ·m − 2 ·year − 1 during the 6‐month dry period, which equates to ~1.4 t of methane consumed within the 102‐ to 138‐km 2 catchment basin for the cave. Unless wet season methane consumption is much greater, the magnitude of methane oxidized within KSEs is not likely to affect the global methane budget. However, our estimates constrain the contribution of a critical resource for this widely distributed subterranean ecosystem.

Global Biogeochemical Cycles↗

USGS2020

Dynamics of marsh-derived sediments in lagoon-type estuaries

Salt marshes are valuable ecosystems that must trap sediments and accrete in order to counteract the deleterious effect of sea‐level rise. Previous studies have shown that the capacity of marshes to build up vertically depends on both autogenous and exogenous processes including eco‐geomorphic feedbacks and sediment supply from in‐land and coastal ocean. There have been numerous efforts to quantify the role played by the sediments coming from marsh edge erosion on the resistance of salt marshes to sea‐level rise. However, the majority of existing studies investigating the interplay between lateral and vertical dynamics use simplified modelling approaches and they do not consider that marsh retreat can affect the regional scale hydrodynamics and sediment retention in back‐barrier basins. In this study, we evaluated the fate of the sediments originating from marsh lateral loss by using high‐resolution numerical model simulations of Jamaica Bay, a small lagoonal estuary located in New York City. Our findings show that up to 42% of the sediments released during marsh edge erosion deposits on the shallow areas of the basin and over the vegetated marsh platforms, contributing positively to the sediment budget of the remaining salt marshes. Furthermore, we demonstrate that with the present‐day sediment supply from the ocean the system cannot keep pace with sea‐level rise even accounting for the sediment liberated in the bay through marsh degradation. Our study highlights the relevance of multiple sediment sources for the maintenance of the marsh complex.

New York↗

USGS2024

Observations of flocs in an estuary and implications for computation of settling velocity

The settling velocity ( w s ) in estuarine environments can impact whether a region is eroding or accreting sediment on the bed, yet determining this rate can be an indirect process requiring a number of assumptions. Accurate determination of w s is especially needed for numerical models to reproduce observed sediment concentrations at the appropriate timescale. We collected information on suspended sediment flocculation at a channel site (13 m deep) and a shallows site (4 m deep) within South San Francisco Estuary, alongside timeseries of flow, wave statistics, turbulent shear, and bottle samples analyzed for both w s and particle size. Using the measurements of floc size and settling velocity, we performed a sensitivity analysis on the unknown parameters in the general explicit formula for settling velocity. The collected particle size distribution data show that multiple classes of flocs are present; these are characterized as flocculi, microflocs, and macroflocs. We show that w s of flocculi is closest to w s for the full distribution. The determined parameter values lead to near-bed mass-weighted settling velocities (standard deviation) of 1.18 (0.55) and 0.22 (0.15) mm/s at the channel and shallows sites, respectively. Modeling efforts can use this work to help select an appropriate sediment model and parameter values.

California↗

USGS2023

Impacts of a Cascadia subduction zone earthquake on water levels and wetlands of the lower Columbia River and Estuary

Subsidence after a subduction zone earthquake can cause major changes in estuarine bathymetry. Here, we quantify the impacts of earthquake-induced subsidence on hydrodynamics and habitat distributions in a major system, the lower Columbia River Estuary, using a hydrodynamic and habitat model. Model results indicate that coseismic subsidence increases tidal range, with the smallest changes at the coast and a maximum increase of ∼10% in a region of topographic convergence. All modeled scenarios reduce intertidal habitat by 24%–25% and shifts ∼93% of estuarine wetlands to lower-elevation habitat bands. Incorporating dynamic effects of tidal change from subsidence yields higher estimates of remaining habitat by multiples of 0–3.7, dependent on the habitat type. The persistent tidal change and chronic habitat disturbance after an earthquake poses strong challenges for estuarine management and wetland restoration planning, particularly when coupled with future sea-level rise effects.

Oregon, Washington↗

USGS2024

Hydroacoustic observations reveal drivers of mixing and salinization of a karst subterranean estuary during intense precipitation

Karst subterranean estuaries within globally ubiquitous carbonate aquifers are coastal groundwater ecosystems that provide an essential water resource for human populations. To understand the drivers of salinization within a coastal aquifer in the Yucatan Peninsula (Mexico), we employed hydroacoustics in flooded caves to observe how oceanic and atmospheric events facilitate mixing between the meteoric lens (fresh-brackish groundwater) and the saline groundwater on tidal and episodic timescales. Precipitation during Tropical Storm Carlotta increased the flow and salinity of the meteoric lens without evidence for vertical mixing across the halocline. We postulate that vertical migration of haloclines in the conduit relative to those within the rock matrix during precipitation creates lateral density gradients that drive mixing, and ultimately creates a brackish layer within the meteoric lens. These results provide a mechanistic explanation for vertical and lateral exchange in a coastal carbonate aquifer, which has implications for groundwater response to future climatic change.

Ox Bel Ha cave system, Yucatan peninsula↗

USGS2025

Evidence of mineral alteration in a salt marsh subterranean estuary: Implications for carbon and trace element cycling

Subterranean estuaries (STE) in salt marshes are biogeochemically active zones where interactions between terrestrial groundwater and seawater drive complex cycling of carbon and trace elements, influenced by mineral dissolution. These systems, characterized by fine-grained organic-rich peat overlying permeable coastal aquifers, play a crucial role as a blue carbon sink, yet their geochemical dynamics remain poorly understood. We investigated dissolved trace elements, carbon, silica, and radium isotopes in a salt marsh STE (Sage Lot Pond, Waquoit Bay, MA) over seasonal and annual cycles. Our results reveal that groundwater and estuarine water circulation through marsh peat and aquifer sediments leads to enrichments of dissolved organic and inorganic carbon (DOC and DIC), Si, Ba, and Mn, with variable source/sink behavior of Fe and net removal of U. Submarine groundwater discharge dominated Ba fluxes, whereas pore water drainage from marsh peat acted as the main sink for U and source of Si. Fe cycling was variable, with terrestrial Fe largely removed as groundwater passed through the STE, consistent with Fe-sulfide and amorphous phase formation. Radium isotope ratios identified two distinct subsurface flow pathways, influenced by metal-oxide cycling and organic matter breakdown. Si production was decoupled from DIC, suggesting Si originates from mineral alteration, whereas DIC results from both mineral weathering and microbial respiration. Silicate mineral alteration, coupled with marsh pore water drainage, accounts for up to 16% of annual DIC exports (66 g C m −2 y −1 ), highlighting the importance of STEs in coastal carbon and trace element cycling, especially as marshes face environmental change.

Massachusetts↗

USGS1998

The discharge of nitrate-contaminated groundwater from developed shoreline to marsh-fringed estuary

As residential development, on-site wastewater disposal, and groundwater contamination increase in the coastal zone, assessment of nutrient removal by soil and sedimentary processes becomes increasingly important. Nitrogen removal efficiency depends largely on the specific flow paths taken by groundwater as it discharges into nitrogen-limited estuarine waters. Shoreline salinity surveys, hydraulic studies, and thermal infrared imagery indicated that groundwater discharge into the Nauset Marsh estuary (Eastham, Massachusetts) occurred in high-velocity seeps immediately seaward of the upland-fringing salt marsh. Discharge was highly variable spatially and occurred through permeable, sandy sediments during low tide. Seepage chamber monitoring showed that dissolved inorganic nitrogen (principally nitrate) traversed nearly conservatively from the aquifer through shallow estuarine sediments to coastal waters at flux rates of 1–3 mmol m −2 h −1 . A significant relationship between pore water NO 3 -N concentrations and NO 3 -N flux rates may provide a rapid method of estimating nitrogen loading from groundwater to the water column.

Massachusets↗

USGS2013

Contributions of atmospheric nitrogen deposition to U.S. estuaries: Summary and conclusions: Chapter 8

A NOAA project was initiated in 1998, with support from the U.S. EPA, to develop state-of-the-art estimates of atmospheric N deposition to estuarine watersheds and water surfaces and its delivery to the estuaries. Work groups were formed to address N deposition rates, indirect (from the watershed) yields from atmospheric and other anthropogenic sources, and direct deposition on the estuarine waterbodies, and to evaluate the levels of uncertainty within the estimates. Watershed N yields were estimated using both a land-use based process approach and a national (SPARROW) model, compared to each other, and compared to estimates of N yield from the literature. The total N yields predicted by the national model were similar to values found in the literature and the land-use derived estimates were consistently higher. Atmospheric N yield estimates were within a similar range for the two approaches, but tended to be higher in the land-use based estimates and were not wellcorrelated. Median atmospheric N yields were around 15% of the total N yield for both groups, but ranged as high as 60% when both direct and indirect deposition were considered. Although not the dominant source of anthropogenic N, atmospheric N is, and will undoubtedly continue to be, an important factor in culturally eutrophied estuarine systems, warranting additional research and management attention.

Book chapter↗

USGS2024

The value of marsh restoration for flood risk reduction in an urban estuary

The use of nature-based solutions (NBS) for coastal climate adaptation has broad and growing interest, but NBS are rarely assessed with the same rigor as traditional engineering solutions or with respect to future climate change scenarios. These gaps pose challenges for the use of NBS for climate adaptation. Here, we value the flood protection benefits of stakeholder-identified marsh restoration under current and future climate change within San Francisco Bay, a densely urbanized estuary, and specifically on the shores of San Mateo County, the county most vulnerable to future flooding in California. Marsh restoration provides a present value of 21 million dollars which increases to over 100 million dollars with 0.5 m of sea level rise (SLR), and to about 500 million dollars with 1 m of SLR. There are hotspots within the county where marsh restoration delivers very high benefits for adaptation, which reach 9 million dollars/hectare with likely future sea level and storm conditions. Today’s investments in nature and community resilience can result in increasing payoffs as climate change progresses and risk increases.

California↗

USGS2025

Stock composition of cryptic Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) in the Restigouche River and estuary, Canada

The Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) is an important species in eastern North America due to its conservation status and cultural significance. Local Mi'gmaw fishers have reported an increase in sturgeon sightings over the last decade in the Restigouche River and estuary. Mi’gmaw Knowledge, oral history, and archaeological finds attest to their historical presence in the region; however, the river is not a documented habitat for Atlantic sturgeon in Western literature. Based on community interest and concern, the Gespe’gewa’gi Institute of Natural Understanding co-developed a Two-Eyed Seeing collaboration to learn more about these sturgeon. Here, we investigate their genetic origin via microsatellite analyses and hypothesized that they would originate from the closest spawning habitat, the St. Lawrence River. We found that, overall, the largest contributor to our Atlantic sturgeon sampled from the Restigouche River system was the St. Lawrence River (85.7% of samples), followed by the Wolastoq (3.6%), then a mixture of the St. Lawrence, the Wolastoq, the Kennebec, and/or the Hudson River populations (10.7%). Improving our understanding of the distribution of Atlantic sturgeon through microsatellite analyses and leveraging range-wide genetic baselines directly assesses the genetic origin of unknown stock compositions and can support the future co-management of the species.

Restigouche River and estuary↗

USGS2025

Mitigating flood risks in urban estuaries: Tidal dynamics, shoreline hardening, nature-based solutions, and floodgates in San Francisco Bay

Hydrodynamic models are valuable tools for understanding the primary factors influencing daily and peak water levels and for guiding discussions on potential adaptation strategies for managing flood risk in coastal areas. This analysis uses the Delft3D San Francisco Bay-Delta Community Model to simulate water levels and incorporates the effects of a number of adaptation measures in the urban San Francisco Bay estuary, California. In particular, we examine the influence of shoreline hardening, nature-based solutions, and subregional floodgates on regional water levels. The result shows that under present conditions, tidal amplification is responsible for generating a wide distribution of extreme water levels across San Francisco Bay. Tidal amplification is found to decrease under sea level rise, thereby producing a relative damping effect on extremes. A comparison of different shoreline scenarios demonstrates that hard frontal shorelines result in higher tidal amplification, whereas restored (soft) shorelines lower amplification. The current shoreline configuration has both hard and soft characteristics and results in an intermediate tidal response. In some areas, wetland restoration reduces extreme water levels by as much as 20 cm, whereas hard-shoreline addition elevates them by as much as 10 cm for 1.5 m of sea level rise. Furthermore, local floodgates can significantly reduce high water levels without major adverse effects elsewhere in San Francisco Bay. These findings point toward the justification for a range of adaptive measures across political boundaries, weighing hard and soft options in addressing the mounting danger of sea level rise.

California↗