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At least 397 records · Page 22Linked to original sources
USGS2025

Mapping global coral vulnerability to stony coral tissue loss disease: Implications for biosecurity and conservation

Stony Coral Tissue Loss Disease (SCTLD) has devastated Caribbean coral reefs since 2014, but its potential for global impact remains uncertain. We developed predictive models to assess the worldwide vulnerability of coral reefs to SCTLD under different origin and spread hypotheses. Using random forest regression models incorporating coral taxonomy and zooxanthellae clade associations from 52 taxa, we projected SCTLD susceptibility and mortality patterns globally using six indices: Mean susceptibility per genus per location, Summed susceptibilities across genera per location, Summed susceptibilities across genera per realm, Mean mortality per genus per location, Summed mortalities across genera per location, and Summed mortalities across genera per realm. Models demonstrated strong predictive performance (R² = 0.57 for susceptibility; R² = 0.73 for mortality) and revealed that about 7% of coral genera per location are potentially susceptible to SCTLD. While mean susceptibility and mortality per genus were highest in the Tropical Atlantic, the summed susceptibility and mortality across genera were much higher in the biodiverse Central Indo-Pacific. Natural barriers could limit SCTLD’s spread, including the mid-Atlantic gap and the low diversity of the Tropical Eastern Pacific, supporting the contained disease hypothesis. However, the widespread distribution of susceptible genera across coral reef realms indicates significant vulnerability should SCTLD circumvent these barriers through human-mediated transport, particularly via ballast water or the aquarium trade. If SCTLD is an invasive pathogen originating in the Pacific, as shipping patterns for the aquarium trade suggest, mortality in its native range would likely be lower than our projections. These findings point to targeted intervention strategies, including enhanced monitoring at key locations, assessment of biosecurity needs in high-risk areas, and prioritized conservation efforts in vulnerable high-diversity regions to prevent SCTLD from spreading globally.

Frontiers in Marine Science↗
USGS2022

Characterizing mauka-to-makai connections for aquatic ecosystem conservation on Maui, Hawaiʻi

Mauka-to-makai (mountain to sea in the Hawaiian language) hydrologic connectivity – commonly referred to as ridge-to-reef – directly affects biogeochemical processes and socioecological functions across terrestrial, freshwater, and marine systems. The supply of freshwater to estuarine and nearshore environments in a ridge-to-reef system supports the food, water, and habitats utilized by marine fauna . In addition, the ecosystem services derived from this land-to-sea connectivity support social and cultural practices (hereafter referred to as socio-cultural) including fishing, aquaculture, wetland agriculture, religious ceremonies, and recreational activities. To effectively guide island resource management, a better understanding of the linkages from ridge-to-reef across natural and social usages is critical, particularly in the context of climate change, with anticipated increasing temperature and shifting precipitation patterns. The objective of this study was to identify spatial linkages that promote multiple and diverse uses, following the ridge-to-reef concept, at an island-wide scale to identify regions of high conservation importance for aquatic resources. We selected the Island of Maui as a study representative of many Pacific islands. Diverse datasets, including agricultural lands within watersheds, wetland locations, presence of stream species, indicators of freshwater input from streams, coral cover, nearshore fish biomass, socio-cultural data such as fishpond locations, wetland taro cultivation, beach recreation use, and lastly the dynamically downscaled Coupled Model Intercomparison Project Phase (CMIP5) future climate projections scenarios (Representative Concentration Pathway (RCP) 4.5 & 8.5) were used to examine the spatial linkages through hydrological connectivity from land to the sea. Zonation spatial planning software was used to prioritize areas of high management and conservation value and to help inform aquatic resources management. The resulting prioritized areas included many minimally disturbed watersheds in east Maui and western nearshore and coastal zones that are adjacent to diverse coral reefs. These results are driven by the importance of fish biomass and coral reef distribution as well as traditional wetland taro cultivation and coastal access points for recreation. These results underline the importance of examining ridge-to-reef systems for aquatic resource management and including important social and cultural values in resource management upon planning adaptation strategies for climate change. Improving our understanding of diverse natural and socio-cultural influences on habitat conditions and their values in these areas provides an opportunity to strategically plan future management and conservation actions.

Hawaii↗
USGS2019

Distribution of modern salt-marsh Foraminifera from the eastern Mississippi Sound, U.S.A.

This study documented surface distributions of live and dead foraminiferal assemblages in the low-gradient tidal marshes of the barrier island and estuarine complex of the eastern Mississippi Sound (Grand Bay, Pascagoula River, Fowl River, Dauphin Island). A total of 71,833 specimens representing 38 species were identified from a gradient of different elevation zones across the study area. We identified five live assemblages and nine biofacies for the dead assemblages from estuarine, low marsh, middle marsh, high marsh, and upland transition environments. Although dissolution of calcareous tests was observed in the dead assemblages, characteristic species and abundance patterns dependent on elevation in the intertidal zone were similar between living assemblages and dead biofacies. The assemblages from the eastern Mississippi Sound estuaries were dominated by Ammonia tepida, Cribroelphidium poeyanum, C. excavatum, and Paratrochammina simplissima. The low marshes were dominated by Ammotium salsum, Ammobaculites exiguus, and Miliammina fusca. The dominant species in the middle marshes was Arenoparrella mexicana. The most abundant species in the high marshes was Entzia macrescens. The upland–marsh transition zones were dominated by Trochamminita irregularis and Pseudothurammina limnetis. Canonical correspondence analysis was applied to assess the relationship between a priori defined biofacies and measured environmental data (elevation, grain size, organic matter, and salinity) to test the hypothesis that distribution of foraminiferal assemblages is driven by elevation and hence flooding frequency. Salinity was the second most important explanatory variable of dead assemblages. Riverine freshwater from the Pascagoula River markedly influenced the live and dead assemblages in the Pascagoula River marsh, which was represented by low diversity and densities and dominance by Ammoastuta inepta. The relationship between the measured environmental variables and assemblage distributions can be used in future Mississippi Sound paleo-environmental studies.

Mississippi↗
USGS2017

Effects of isolation on ant assemblages depend on microhabitat

How isolation affects biological communities is a fundamental question in ecology and conservation biology. Local diversity (α) and regional diversity (γ) are consistently lower in insular areas. The pattern of species turnover (β diversity) and the influence of isolation on competitive interactions are less predictable. Differences in communities across microhabitats within an isolated patch could contribute to the variability in patterns related to isolation. Trees form characteristically dense and sparse patches (low vs. high isolation) in floating marshes in coastal Louisiana, and canopy and root areas around these trees could support distinct ant communities. Consequently, trees in floating marshes provide an ideal environment to study the effects of isolation on community assemblages in different microhabitats. We sampled ant communities in 120 trees during the summer of 2016. We found ant α diversity was not different between the canopy and roots, and the magnitude and directional effects of isolation on ants were inconsistent between the canopy and root areas. In the roots of sparse sites, ant diversity (α, β, and γ) was lower, species composition was changed, and the signature of interspecific competition was more prominent compared to dense sites. In the canopy, however, significant differences between dense and sparse sites were only detected in α and γ diversity, and ant species co‐occurrence was not significantly different from a random distribution. The inconsistent responses of ants in canopy and root areas to isolation may be due to the differences of species pool size, environmental harshness, and species interactions between strata. In addition, these findings indicate that communities in distinct microenvironments can respond differentially to habitat isolation. We suggest incorporating organisms from different microhabitats into future research to better understand the influence of isolation on the assembly of biological communities.

Ecosphere↗
USGS2024

Triggering the 2022 eruption of Mauna Loa

Distinguishing periods of intermittent unrest from the run-up to eruption is a major challenge at volcanoes around the globe. Comparing multidisciplinary monitoring data with mineral chemistry that records the physical and spatio-temporal evolution of magmas fundamentally advances our ability to forecast eruptions. The recent eruption of Mauna Loa, Earth’s largest active volcano, provides a unique opportunity to differentiate unrest from run-up and improve forecasting of future eruptions. After decades of intermittent seismic and geodetic activity over 38 years of repose, Mauna Loa began erupting on 27 November 2022. Here we present a multidisciplinary synthesis that tracks the spatio-temporal evolution of precursory activity by integrating mineral and melt chemistry, fluid inclusion barometry, numerical modeling of mineral zoning, syn-eruptive gas plume measurements, the distribution and frequency of earthquake hypocenters, seismic velocity changes, and ground deformation. These diverse data indicate that the eruption occurred following a 2-month period of sustained magma intrusion from depths of 3–5 km up to 1–2 km beneath the summit caldera, providing a new model of the plumbing system at this very high threat volcano. Careful correlation of both the geochemistry and instrumental monitoring data improves our ability to distinguish unrest from the run-up to eruption by providing deeper understanding of the both the monitoring data and the magmatic system—an approach that could be applied at other volcanic systems worldwide.

Hawaii↗
USGS2014

Discrete-storm water-table fluctuation method to estimate episodic recharge.

We have developed a method to identify and quantify recharge episodes, along with their associated infiltration-related inputs, by a consistent, systematic procedure. Our algorithm partitions a time series of water levels into discrete recharge episodes and intervals of no episodic recharge. It correlates each recharge episode with a specific interval of rainfall, so storm characteristics such as intensity and duration can be associated with the amount of recharge that results. To be useful in humid climates, the algorithm evaluates the separability of events, so that those whose recharge cannot be associated with a single storm can be appropriately lumped together. Elements of this method that are subject to subjectivity in the application of hydrologic judgment are values of lag time, fluctuation tolerance, and master recession parameters. Because these are determined once for a given site, they do not contribute subjective influences affecting episode-to-episode comparisons. By centralizing the elements requiring scientific judgment, our method facilitates such comparisons by keeping the most subjective elements openly apparent, making it easy to maintain consistency. If applied to a period of data long enough to include recharge episodes with broadly diverse characteristics, the method has value for predicting how climatic alterations in the distribution of storm intensities and seasonal duration may affect recharge.

Groundwater↗
USGS2016

Predictors of current and longer-term patterns of abundance of American pikas ( Ochotona princeps ) across a leading-edge protected area

American pikas ( Ochotona princeps ) have been heralded as indicators of montane-mammal response to contemporary climate change. Pikas no longer occupy the driest and lowest-elevation sites in numerous parts of their geographic range. Conversely, pikas have exhibited higher rates of occupancy and persistence in Rocky Mountain and Sierra Nevada montane ‘mainlands’. Research and monitoring efforts on pikas across the western USA have collectively shown the nuance and complexity with which climate will often act on species in diverse topographic and climatic contexts. However, to date no studies have investigated habitat, distribution, and abundance of pikas across hundreds of sites within a remote wilderness area. Additionally, relatively little is known about whether climate acts most strongly on pikas through direct or indirect (e.g., vegetation-mediated) mechanisms. During 2007–2009, we collectively hiked >16,000 km throughout the 410,077-ha Glacier National Park, Montana, USA, in an effort to identify topographic, microrefugial, and vegetative characteristics predictive of pika abundance. We identified 411 apparently pika-suitable habitat patches with binoculars ( in situ ), and surveyed 314 of them for pika signs. Ranking of alternative logistic-regression models based on AIC c scores revealed that short-term pika abundances were positively associated with intermediate elevations, greater cover of mosses, and taller forbs, and decreased each year, for a total decline of 68% during the three-year study; whereas longer-term abundances were associated only with static variables (longitude, elevation, gradient) and were lower on north-facing slopes. Earlier Julian date and time of day of the survey (i.e., midday vs. not) were associated with lower observed pika abundance. We recommend that wildlife monitoring account for this seasonal and diel variation when surveying pikas. Broad-scale information on status and abundance determinants of montane mammals, especially for remote protected areas, is crucial for land and wildlife-resource managers trying to anticipate mammalian responses to climate change.

Montana↗
USGS2006

Ostracods and facies of the Early and Middle Frasnian at Devils Gate in Nevada: Relationship to the Alamo Event

In order to document the Alamo Event and to investigate its influence on shallow-marine environments, we undertook a study of ostracods, conodonts, and analysis of the sedimentology of the lower member of the type Devils Gate Limestone, Six major carbonate microfacies (MF1-MF6) ranging from open-marine environments below storm wave base to pre-evaporitic supratidal lagoons were recognized. The sedimentological study detected no important sedimentological changes during the Alamo Event; only an influx of detrital material and lithoclasts indicate that an unusual event had occurred. Ostracods are generally rare or absent in the lower member of the Devils Gate Limestone, and only 2,000 carapaces, valves and fragments were extracted; from these some 26 taxa were identified. Two new species, Voronina? eureka and Serenida dorsoplicata are proposed. The ostracods belong to the Eifelian Mega-Assemblage and their distribution was influenced by strong salinity variations. Because of the rarity and low diversity of ostracods and conodonts in samples collected from the lower part of the lower member of the Devils Gate Limestone it is not adequate to demonstrate conclusively an extinction event close to the Alamo Event Bed. Nevertheless the greater abundance and diversity of ostracods above this bed seems to indicate that the Alamo Event did not result in significant extinction of ostracod taxa in this shallow water setting. The ostracod fauna present in the lower member of the Devils Gate Limestone suggests faunal exchanges between Nevada and the Russian Platform via the Western Canadian platform.

Nevada↗
USGS2000

Protection of fish spawning habitat for the conservation of warm-temperature reef-fish fisheries of shelf-edge reefs of Florida

We mapped and briefly describe the surficial geology of selected examples of shelf-edge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag ( Mycteroperca microlepis ), scamp ( M. phenax ), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Florida↗
USGS2000

Protection of fish spawning habitat for the conservation of warm temperate reef fish fisheries of shelf-edge reefs of Florida

We mapped and briefly describe the surficial geology of selected examples of shelf-edge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag ( Mycteroperca microlepis ), scamp ( M. phenax ), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Florida↗
USGS2022

Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within-species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: ( i ) Genetic Diversity; ( ii ) Genetic Differentiation; ( iii ) Inbreeding; and ( iv ) Effective Population Size ( N e ). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large-scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long-term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.

Biological Reviews↗
USGS2016

Distributions of small nongame fishes in the lower Yellowstone River

The Yellowstone River is the longest unimpounded river in the conterminous United States. It has a relatively natural flow regime, which helps maintain diverse habitats and fish assemblages uncommon in large rivers elsewhere. The lower Yellowstone River was thought to support a diverse nongame fish assemblage including several species of special concern. However, comprehensive data on the small nongame fish assemblage of the lower Yellowstone River is lacking. Therefore, we sampled the Yellowstone River downstream of its confluence with the Clark’s Fork using fyke nets and otter trawls to assess distributions and abundances of small nongame fishes. We captured 42 species (24 native and 18 nonnative) in the lower Yellowstone River with fyke nets. Native species constituted over 99% of the catch. Emerald shiners Notropis atherinoides , western silvery minnows Hybognathus argyritis , flathead chubs Platygobio gracilis , sand shiners Notropis stramineus , and longnose dace Rhinichthys cataractae composed nearly 94% of fyke net catch and were caught in every segment of the study area. We captured 24 species by otter trawling downstream of the Tongue River. Sturgeon chubs Macrhybopsis gelida , channel catfish Ictalurus punctatus , flathead chubs, stonecats Noturus flavus , and sicklefin chubs Macrhybopsis meeki composed 89% of the otter trawl catch. The upstream distributional limit of sturgeon chubs in the Yellowstone River was the Tongue River; few sicklefin chubs were captured above Intake Diversion Dam. This study not only provides biologists with baseline data for future monitoring efforts on the Yellowstone River but serves as a benchmark for management and conservation efforts in large rivers elsewhere as the Yellowstone River represents one of the best references for a naturally functioning Great Plains river.

Montana↗
USGS2004

Hydrologic, soil, and vegetation gradients in remnant and constructed riparian wetlands in west-central Missouri, 2001-04

A study was conducted by the U.S. Geological Survey in cooperation with the Missouri Department of Conservation at the Four Rivers Conservation Area (west-central Missouri), between January 2001 and March 2004, to examine the relations between environmental factors (hydrology, soils, elevation, and landform type) and the spatial distribution of vegetation in remnant and constructed riparian wetlands. Vegetation characterization included species composition of ground, understory, and overstory layers in selected landforms of a remnant bottomland hardwood ecosystem, monitoring survival and growth of reforestation plots in leveed and partially leveed constructed wetlands, and determining gradients in colonization of herbaceous vegetation in a constructed wetland. Similar environmental factors accounted for variation in the distribution of ground, understory, and overstory vegetation in the remnant bottomland forest plots. The primary measured determining factors in the distribution of vegetation in the ground layer were elevation, soil texture (clay and silt content), flooding inundation duration, and ponding duration, while the distribution of vegetation in the understory layer was described by elevation, soil texture (clay, silt, and sand content), total flooding and ponding inundation duration, and distance from the Marmaton or Little Osage River. The primary measured determining factors in the distribution of overstory vegetation in Unit 1 were elevation, soil texture (clay, silt, and sand content), total flooding and ponding inundation duration, ponding duration, and to some extent, flooding inundation duration. Overall, the composition and structure of the remnant bottomland forest is indicative of a healthy, relatively undisturbed flood plain forest. Dominant species have a distribution of individuals that shows regeneration of these species with significant recruitment in the smaller size classes. The bottomland forest is an area whose overall hydrology has not been significantly altered; however, portions of the area have suffered from hydrologic alteration by a drainage ditch that is resulting in the displacement of swamp and marsh species by colonizing shrub and tree species. This area likely will continue to develop into an immature flood plain forest under the current (2004) hydrologic regime. Reforestation plots in constructed wetlands consisted of sampling survival and growth of multiple tree species (Quercus palustris, pin oak; Carya illinoiensis, pecan) established under several production methods and planted at multiple elevations. Comparison of survival between tree species and production types showed no significant differences for all comparisons. Survival was high for both species and all production types, with the highest mortality seen in the mounded root production method (RPM®) Quercus palustris (pin oak, 6.9 percent), while direct seeded Quercus palustris at middle elevation and bare root Quercus palustris seedlings at the low elevation plots had 100 percent survival. Measures of growth (diameter and height) were assessed among species, production types, and elevation by analyzing relative growth. The greatest rate of tree diameter (72.3 percent) and height (65.3 percent) growth was observed for direct seeded Quercus palustris trees planted at a middle elevation site. Natural colonized vegetation data were collected at multiple elevations within an abandoned cropland area of a constructed wetland. The primary measured determining factors in the distribution of herbaceous vegetation in this area were elevation, ponding duration, and soil texture. Richness, evenness, and diversity were all significantly greater in the highest elevation plots as a result of more recent disturbance in this area. While flood frequency and duration define the delivery mechanism for inundation on the flood plain, it is the duration of ponding and amount of “topographic capture” of these floodwaters in fluvial landforms that largely determines the survivability and distribution of tree species in both remnant and constructed wetlands. Ponding, flooding, ground-water levels, and precipitation all accounted for saturated conditions in the upper soil profiles in the Four Rivers Conservation Area monitoring sites. Of these processes, ponding and flooding were the primary factors accounting for soil saturation conditions. The identification of landform features in undisturbed settings, therefore, can be an important aide in predicting the sustainable spatial distribution of various plant species in riparian revegetation projects.

Missouri↗
USGS2019

Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher

Habitat loss and fragmentation are primary threats to biodiversity worldwide. We studied the impacts of habitat loss and fragmentation on genetic connectivity and diversity among local aggregations of the California gnatcatcher ( Polioptila californica californica ) across its U.S. range. With a dataset of 268 individuals genotyped at 19 microsatellite loci, we analyzed genetic structure across the range using clustering analyses, exact tests for population differentiation, and a pedigree analysis to examine the spatial distribution of first-order relatives throughout the study area. In addition, we developed a habitat suitability model and related percent suitable habitat to genetic diversity indices within aggregations at two spatial scales. We detected a single genetic cluster across the range, with weak genetic structure among recently geographically isolated aggregations in the northern part of the range. The pedigree analysis detected closely related individuals across disparate aggregations and across large geographic distances in the majority of the sampled range, demonstrating that recent long-distance dispersal has occurred within this species. Genetic diversity was independent of suitable habitat at a local 5-km scale, but increased in a non-linear fashion with habitat availability at a broader, 30-km scale. Diversity declined steeply when suitable habitat within 30-km fell below 10%. Together, our results suggest that California gnatcatchers retain genetic connectivity across the majority of the current distribution of coastal sage scrub fragments, with the exception of some outlying aggregations. Connectivity may help support long-term persistence under current conservation and management strategies. However, emerging structure among more remote aggregations and associations between available habitat and genetic diversity also suggest that continued loss of habitat could threaten diversity and connectivity in the future.

California↗
USGS2019

Phenology and species diversity in a Lake Huron ichthyoplankton community: Ecological implications of invasive species dominance

Ichthyoplankton communities are dynamic and vary spatiotemporally based on factors such as wind, water currents, and phenology. Nonetheless, ichthyoplankton are an indicator of spawning success in fish populations and examining their community diversity and composition can serve to provide information on ecosystem integrity. Although some ichthyoplankton species may be transient, understanding their distribution in space and time provides information on species composition, abundance, and habitat use during critical early life stages. We sampled the spring-summer ichthyoplankton community during 2008 and 2009 in northern Lake Huron to determine species succession, abundance, and species diversity along physical and environmental gradients. Seasonal succession of species was similar during both years, indicating well-defined patterns in spawning by local populations. Invasive alewife, rainbow smelt, and round goby were the dominant species during both years, with native stickleback species also abundant. Shannon Entropy (H’) increased with increasing water temperature until late summer when H’ declined. H’ decreased with increasing bottom depth and distance to tributary mouth indicating the important ecological role of these habitat features during early life stages. Although ichthyoplankton diversity was comparable to or higher than that reported for other areas of the Great Lakes, the prominence of invasive species in our study is reflective of the degraded state of the Lake Huron fish community, despite large reductions in invasive planktivorous fish since 2004. Continued monitoring of ichthyoplankton communities will be important for measuring the impacts of species invasions or other ecosystem stressors on fish community structure in the Great Lakes.

Lake Huron↗
USGS2013

Factors related to occurrence and distribution of selected bacterial and protozoan pathogens in Pennsylvania streams

The occurrence and distribution of fecal indicator bacteria (FIB) and bacterial and protozoan pathogens are controlled by diverse factors. To investigate these factors in Pennsylvania streams, 217 samples were collected quarterly from a 27-station water-quality monitoring network from July 2007 through August 2009. Samples were analyzed for concentrations of Escherichia coli (EC) and enterococci (ENT) indicator bacteria, concentrations of Cryptosporidium oocysts and Giardia cysts, and the presence of four genes related to pathogenic types of EC ( eae A, stx 2, stx 1, rfb O157 ) plus three microbial source tracking (MST) gene markers that are also associated with pathogenic ENT and EC ( esp , LTIIa, STII). Water samples were concurrently analyzed for basic water chemistry, physical measures of water quality, nutrients, metals, and a suite of 79 organic compounds that included hormones, pharmaceuticals, and antibiotics. For each sample location, stream discharge was measured by using standardized methods at the time of sample collection, and ancillary sample site information, such as land use and geological characteristics, was compiled. Samples exceeding recreational water quality criteria were more likely to contain all measured pathogen genes but not Cryptosporidium or Giardia (oo)cysts. FIB and Giardia density and frequency of eae A gene occurrence were significantly related to season. When discharge at a sampling location was high (>75th percentile of daily mean discharge), there were greater densities of FIB and Giardia , and the stx2 , rfb O157 , STII, and esp genes were found more frequently than at other discharge conditions. Giardia occurrence was likely related to nonpoint sources, which are highly influential during seasonal overland transport resulting from snowmelt and elevated precipitation in late winter and spring in Pennsylvania. When MST markers of human, swine, or bovine origin were present, samples more frequently carried the eae A, stx 2, stx 1, and rfb O157 genes, but no genes were related exclusively to an individual MST marker. The human source pharmaceuticals (HSPs) acetaminophen and caffeine were correlated with Giardia , and the presence of HSPs proved to be more useful than MST markers in distinguishing the occurrence of Giardia . The HSPs caffeine and carbamazepine were correlated with the sum total of pathogen genes detected in a sample, demonstrating the value of using HSPs as an indicator of fecally derived pathogens. Sites influenced by urban land use with less forest were more likely to have greater FIB and Giardia densities and sum of the array of pathogen genes. Sites dominated by shallow carbonate bedrock in the upstream catchment were likely to have greater FIB densities and higher sum totals of pathogen genes but no correlation with Giardia detection. Our study provides a range of specific environmental, chemical, geologic, and land-use variables related to occurrence and distribution of FIB and selected bacterial and protozoan pathogens in Pennsylvania streams. The information presented could be useful for resource managers in understanding bacterial and protozoan pathogen occurrence and their relation to fecal indicator bacteria in similar settings.

Pennsylvania↗
USGS2016

Disentangling vegetation diversity from climate–energy and habitat heterogeneity for explaining animal geographic patterns

Broad-scale animal diversity patterns have been traditionally explained by hypotheses focused on climate–energy and habitat heterogeneity, without considering the direct influence of vegetation structure and composition. However, integrating these factors when considering plant–animal correlates still poses a major challenge because plant communities are controlled by abiotic factors that may, at the same time, influence animal distributions. By testing whether the number and variation of plant community types in Europe explain country-level diversity in six animal groups, we propose a conceptual framework in which vegetation diversity represents a bridge between abiotic factors and animal diversity. We show that vegetation diversity explains variation in animal richness not accounted for by altitudinal range or potential evapotranspiration, being the best predictor for butterflies, beetles, and amphibians. Moreover, the dissimilarity of plant community types explains the highest proportion of variation in animal assemblages across the studied regions, an effect that outperforms the effect of climate and their shared contribution with pure spatial variation. Our results at the country level suggest that vegetation diversity, as estimated from broad-scale classifications of plant communities, may contribute to our understanding of animal richness and may be disentangled, at least to a degree, from climate–energy and abiotic habitat heterogeneity.

Ecology and Evolution↗
USGS1999

Temporal and spatial variability in thalweg profiles of a gravel-bed river

This study used successive longitudinal thalweg profiles in gravel-bed rivers to monitor changes in bed topography following floods and associated large sediment inputs. Variations in channel bed elevations, distributions of residual water depths, percentage of channel length occupied by riffles, and a spatial autocorrelation coefficient (Moran's I ) were used to quantify changes in morphological diversity and spatial structure in Redwood Creek basin, northwestern California. Bed topography in Redwood Creek and its major tributaries consists primarily of a series of pools and riffles. The size, frequency and spatial distribution of the pools and riffles have changed significantly during the past 20 years. Following large floods and high sediment input in Redwood Creek and its tributaries in 1975, variation in channel bed elevations was low and the percentage of the channel length occupied by riffles was high. Over the next 20 years, variation in bed elevations increased while the length of channel occupied by riffles decreased. An index [(standard deviation of residual water depth/bankfull depth) × 100] was developed to compare variations in bed elevation over a range of stream sizes, with a higher index being indicative of greater morphological diversity. Spatial autocorrelation in the bed elevation data was apparent at both fine and coarse scales in many of the thalweg profiles and the observed spatial pattern of bed elevations was found to be related to the dominant channel material and the time since disturbance. River reaches in which forced pools dominated, and in which large woody debris and bed particles could not be easily mobilized, exhibited a random distribution of bed elevations. In contrast, in reaches where alternate bars dominated, and both wood and gravel were readily transported, regularly spaced bed topography developed at a spacing that increased with time since disturbance. This pattern of regularly spaced bed features was reversed following a 12-year flood when bed elevations became more randomly arranged.

Earth Surface Processes and Landforms↗