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USGS2025

Assessing the Feasibility of Reintroducing San Francisco Gartersnakes ( Thamnophis sirtalis tetrataenia ) to La Honda Creek Open Space Preserve, San Mateo County, California

Reintroductions are used worldwide to increase the viability of species and restore native ecological communities. The success of reintroductions is usually judged by the establishment of self-sustaining populations, restoration of naturally occurring ecological communities, and the species resuming its ecological function. Recovery for the endangered San Francisco gartersnake (SFGS, Thamnophis sirtalis tetrataenia ), a subspecies with a small range in San Mateo and Santa Cruz counties in California, will likely require reintroduction and establishment of new populations within its historical range. La Honda Creek Open Space Preserve (LHC), managed by the Midpeninsula Regional Open Space District (MROSD), is one potential site for the reintroduction of SFGS. The La Honda Creek Open Space Preserve is a preserve managed for wildlife, recreation, grazing, and agriculture located near extant populations of SFGS inhabiting other open space preserves managed by MROSD (Cloverdale Ranch Open Space Preserve [CR]; Russian Ridge Open Space Preserve [RR]). We compared the habitat and prey communities at LHC to nearby open space preserves that support extant SFGS populations. Based on pond surveys done annually since 2008, the occurrence of California red-legged frogs ( Rana draytonii ), Sierran chorus frogs ( Pseudacris sierra ), and Pacific newts ( Taricha spp.) at LHC indicates a similar prey community at this preserve to those at CR and RR. Likewise, the landscape at LHC is a similar mosaic of wetlands, open grassland, shrub-dominated scrub, and coast redwood ( Sequoia sempervirens ) and Douglas fir ( Pseudotsuga menziesii ) forest that meets the habitat requirements for the life history of SFGS at CR and RR. One difference between LHC and preserves with SFGS populations is the lack of vegetative cover immediately adjacent to some wetlands at LHC, which could affect the ability of SFGS to disperse from wetlands and find terrestrial refuges. To evaluate alternative reintroduction strategies, we simulated population viability for a fixed number of SFGS released at LHC into one to six subpopulations (where each wetland represents a subpopulation) over a period from 5 to 20 years. Population simulations indicated that the highest average viability (in other words, the lowest probability of quasi-extinction) occurred when all SFGS were released into a single subpopulation and releases continued annually for 15 to 20 years. Our results indicate that LHC is a good candidate for reintroducing SFGS with suitable habitat, climate, and prey for this snake subspecies. Supporting SFGS populations at LHC could require habitat management to provide sufficient vegetative cover in the terrestrial environment near wetlands. Maintaining genetic diversity in the reintroduced population will also be paramount to ensure negative effects of inbreeding and homozygosity do not affect population viability.

California↗

USGS2026

Decadal shifts in groundwater age detected by environmental tracers across California, USA

Groundwater age offers important insight into recharge, storage, and contamination risk. Although models predict age changes can be driven by pumping and climate variability, direct observational evidence remains limited. Here, we analyzed paired environmental tracer suites (tritium, carbon-14, and tritiogenic helium-3) collected a decade apart from 268 wells across California to assess the prevalence of groundwater age transience. Travel-time distribution models and statistical tests indicated age transience at 29% of sites, occurring most often in agricultural regions, such as the San Joaquin Valley and Southern Coast Ranges, where large carbon-14 changes coincided with substantial nitrate and chloride shifts. Sites with tritiogenic helium-3 data showed more frequent age transience, underscoring the value of multi-tracer data sets. These results provide the first regional evidence of widespread groundwater age change and a method for detecting changing water balances with implications for groundwater sustainability and water quality.

California↗

USGS1984

Analysis of the Carmel Valley alluvial ground-water basin, Monterey County, California

A two-dimensional, finite-element, digital model was developed for the Carmel Valley alluvial ground-water basin using measured, computed, and estimated discharge and recharge data for the basin. Discharge data included evapotranspiration by phreatophytes and agricultural, municipal, and domestic pumpage. Recharge data included river leakage, tributary runoff, and pumping return flow. Recharge from subsurface boundary flow and rainfall infiltration was assumed to be insignificant. From 1974 through 1978, the annual pumping rate ranged from 5,900 to 9,100 acre-feet per year with 55 percent allotted to municipal use principally exported out of the valley, 44 percent to agricultural use, and 1 percent to domestic use. The pumpage return flow within the valley ranged from 900 to 1,500 acre-feet per year. The aquifer properties of transmissivity (about 5,900 feet squared per day) and of the storage coefficient (0.19) were estimated from an average alluvial thickness of 75 feet and from less well-defined data on specific capacity and grain-size distribution. During calibration the values estimated for hydraulic conductivity and storage coefficient for the lower valley were reduced because of the smaller grain size there. The river characteristics were based on field and laboratory analyses of hydraulic conductivity and on altitude survey data. The model is intended principally for simulation of flow conditions using monthly time steps. Time variations in transmissivity and short-term, highrecharge potential are included in the model. The years 1974 through 1978 (including "pre-" and "post-" drought) were selected because of the extreme fluctuation in water levels between the low levels measured during dry years and the above-normal water levels measured during the preceding and following wet years. Also, during this time more hydrologic information was available. Significantly, computed water levels were generally within a few feet of the measured levels, and computed flows were close to gaged riverflows for this simulation. However, the nonuniqueness of solutions with respect to different sets of data indicates the model does not necessarily validate the correctness of the individual variables. The model might be improved with additional knowledge of the distribution of confining sediments in the lower end of the valley and the aquifer properties above and below them. The solution algorithm could account for confinement or partial confinement in the lower end of the valley plus contributions from the Tularcitos aquifer.

California↗

USGS2013

Groundwater quality in the Madera and Chowchilla subbasins of the San Joaquin Valley, California

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s untreated groundwater quality and increases public access to groundwater-quality information. The Madera and Chowchilla subbasins of the San Joaquin Valley constitute one of the study units being evaluated. The Madera-Chowchilla study unit is about 860 square miles and consists of the Madera and Chowchilla groundwater subbasins of the San Joaquin Valley Basin (California Department of Water Resources, 2003; Shelton and others, 2009). The study unit has hot, dry summers and cool, moist winters. Average annual rainfall ranges from 11 to 15 inches, most of which occurs between November and February. The main surface-water features in the study unit are the San Joaquin, Fresno, and Chowchilla Rivers, and the Madera and Chowchilla canals. Land use in the study unit is about 69 percent (%) agricultural, 28% natural (mainly grasslands), and 3% urban. The primary crops are orchards and vineyards. The largest urban area is the city of Madera. The primary aquifer system is defined as those parts of the aquifer corresponding to the perforated intervals of wells listed in the California Department of Public Health (CDPH) database. In the Madera-Chowchilla study unit, these wells typically are drilled to depths between 200 and 800 feet, consist of a solid casing from land surface to a depth of about 140 to 400 feet, and are perforated below the solid casing. Water quality in the primary aquifer system may differ from that in the shallower and deeper parts of the aquifer system. The primary aquifer system in the study unit consists of Quaternary-age alluvial-fan and fluvial deposits that were formed by the rivers draining the Sierra Nevada. Sediments consist of gravels, sands, silts, and clays and generally are coarser closest to the Sierra Nevada and become finer towards the center of the basin. The structure and composition of the deposits in the Madera-Chowchilla study unit are different from those in other parts of the eastern San Joaquin Valley because the Fresno and Chowchilla Rivers primarily drain the Sierra Nevada foothills, whereas the larger rivers drain higher elevations with greater sediment supply. These differences in the sources of sediments are important because they may affect the groundwater chemistry and the physical structure of the sedimentary deposits. Some of the clay layers are lacustrine deposits, the most extensive of which, the Corcoran Clay, underlies the western part of the study unit and divides the primary aquifer system into an unconfined to semi-confined upper system and a largely confined lower system. Regional lateral flow of groundwater is southwest towards the valley trough. Irrigation return flows are the major source of groundwater recharge, and groundwater pumping is the major source of discharge. Groundwater on a lateral flow path may be repeatedly extracted by pumping wells and reapplied at the surface multiple times before reaching the valley trough, resulting in a substantial component of downward vertical flow (Burow and others, 2004; Phillips and others, 2007; Faunt, 2009). This flow pattern enhances movement of water from shallow depths to the primary aquifer system.

California↗

USGS2018

The influence of spatiotemporally decoupled land use on honey bee colony health and pollination service delivery

Societal dependence on insects for pollination of agricultural crops has risen amidst concerns over pollinator declines. Habitat loss and lack of forage have been implicated in the decline of both managed and native pollinators. Land use changes in the Northern Great Plains of the US, a region supporting over 1 million honey bee colonies annually, have shifted away from historical grassland ecosystems bees rely on for forage toward landscapes dominated by corn, soybeans, and other row crops. We investigated how land use impacts honey bee colony population size during the growing season and subsequent colony population size for almond pollination in central California the following February. We provide estimates of how land use affects beekeeper economics by linking summer habitat with pollination service payments and later production of new colonies. Our results demonstrate that a greater presence of non-bee foraged agricultural crops surrounding apiaries in the summer results in smaller colonies by the end of the growing season. Apiaries with colonies exhibiting smaller population size in the autumn were also smaller during almond pollination the following spring; impacting the beekeeper with a reduced per colony rental fee for pollination services and reduced potential for creating new spring colonies, based on prior growing season land use. This study highlights the downstream effects of factors driving land use decisions on the ability of beekeepers to provide robust honey bee colonies to support the pollination industry on a national scale. It also demonstrates the direct linkages between habitat in the Northern Great Plains, bee health, and pollination services rendered elsewhere in the US.

Environmental Research Letters↗

USGS1993

Detailed study of water quality, bottom sediment, and biota associated with irrigation drainage in the Salton Sea area, California, 1988-90

Results of a detailed study by the National Irrigation Water-Quality Program (NIWQP), U.S. Department of the Interior, indicate that factors controlling contaminant concentrations in subsurface irrigation drainwater in the Imperial Valley are soil characteristics, hydrology, and agricultural practices. Higher contaminant concentrations commonly were associated with clayey soils, which retard the movement of irrigation water and thus increase the degree of evaporative concentration. Regression of hydrogen- and oxygen-isotope ratios in samples collected from sumps yields a linear drainwater evaporation line that extrapolates through the isotopic composition of Colorado River water, thus demonstrating that Colorado River water is the sole source of subsurface drainwater in the Imperial Valley. Ratios of selenium to chloride indicate that selenium present in subsurface drainwater throughout the Imperial Valley originates from the Colorado River. The selenium load discharged to the Salton Sea from the Alamo River, the largest contributor, is about 6.5 tons/yr. Biological sampling and analysis showed that drainwater contaminants, including selenium, boron, and DDE, are accumulating in tissues of migratory and resident birds that use food sources in the Imperial Valley and the Salton Sea. Selenium concentration in fish-eating birds, shorebirds, and the endangered Yuma clapper rail were at levels that could affect reproduction. Boron concentrations in migratory waterfowl and resident shorebirds were at levels that potentially could cause reduced growth in young. As a result of DDE contamination of food sources, waterfowl and fish-eating birds in the Imperial Valley may be experiencing reproductive impairment.

Water-Resources Investigations Report↗

USGS2020

Trihalomethane precursors: Land use hot spots, persistence during transport, and management options

To meet drinking water regulations, rather than investing in costly treatment plant operations, managers can look for ways to improve source water quality; this requires understanding watershed sources and fates of constituents of concern. Trihalomethanes (THMs) are one of the major classes of regulated disinfection byproducts, formed when a specific fraction of the organic carbon pool—referred to as THM precursors—reacts with chorine and/or bromine during treatment. Understanding the source, fate, timing and duration of the organic compounds that react to form THMs will allow identification of targeted and effective management actions. In this study we evaluated THM precursor contributions from multiple land use categories and hydrologic contexts, including novel data for urban land uses that demonstrate strong potential to release water with high THM formation potential (THMFP; median 618 μg L −1 ): greater than storm runoff integrated across a mixed-use (1/3 natural, 2/3 agricultural) watershed (median 460 μg L −1 ), irrigation runoff from agricultural systems (357 μg L −1 ), or runoff from a natural forested (median 123 μg L −1 ) and shrubland/grassland (median 259 μg L −1 ) watersheds. While individual storm events released high THM precursor concentrations over short periods, dry season agricultural irrigation as well as urban landscapes have the potential to release water high in THM precursors for several months. Experimental bioassays and sampling along 333 miles of the California Aqueduct confirmed bioavailability and photooxidation potential of less than 10% for THM precursors, suggesting that rivers with residence times of days to weeks may act as THM precursor conduits, shuttling THM precursors from hundreds of miles away to drinking water intakes with minimal degradation. This finding has considerable implications for water managers, who may therefore consider THM precursor management strategies that target even sources located far upstream.

California↗

USGS2014

Report of the committee on chemistry of natural waters, 1933–34

The personnel of this Committee during the past year, practically the same as during the previous year, has been as follows: C. S. Howard, Chairman—United States Geological Survey, Washington, D.C. L. C. Case—Gypsy Oil Company, Tulsa, Oklahoma. W. D. Collins—United States Geological Survey, Washington, D.C. H. F. Flynn—United States Engineer Office, 35 South Ninth Street, Philadelphia, Pennsylvania. W. P. Kelley—University of California, Riverside, California. Alfred C. Lane—Tufts College, Tufts College, Massachusetts. Augustus Locke—477 Mills Building, San Francisco, California. R. D. Leitch—United States Bureau of Mines, Pittsburgh, Pennsylvania. H. T. Logan—United States Bureau of Standards, Washington, D.C. Thomas S. Lovering—United States Geological Survey, Washington, D.C. Thomas E. Means—111 Sutter Street, San Francisco, California. F. B. Plummer—University of Texas, Austin, Texas. J. W. Sale—United States Food and Drug Administration, Washington, D.C. C S. Scofield—Bureau of Plant Industry, Department of Agriculture, Washington, D.C. Thomas G. Thompson—University of Washington, Seattle, Washington.

Eos, Transactions, American Geophysical Union↗

USGS2022

Yuma Ridgway’s rail selenium exposure and occupancy within managed and unmanaged emergent marshes at the Salton Sea

Yuma Ridgway’s rail ( Rallus obsoletus yumanensis , hereafter, rail) is an endangered species for which patches of emergent marsh within the Salton Sea watershed comprise a substantial part of habitat for the species’ disjointed range in the southwestern United States. These areas of emergent marsh include (1) marshes managed by federal (particularly the U.S. Fish and Wildlife Service’s Sonny Bono Salton Sea National Wildlife Refuge), state (California Department of Fish and Wildlife), and local (Imperial Irrigation District) resource agencies that are sustained by direct deliveries of Colorado River water and (2) unmanaged marshes sustained by agricultural drainage water. Management of rail habitat in this arid environment is complicated by increasingly limited availability of unimpaired freshwater owing to water management decisions associated with the Quantification Settlement Agreement and risks posed by potentially harmful concentrations of selenium found in agricultural drainage water that can readily bioaccumulate in aquatic food webs. To provide timely science for managers, herein we report summary statistics for managed and unmanaged emergent marshes sampled at the Salton Sea during the rail breeding season of 2016 pertaining to (1) selenium concentrations in food webs representing dietary pathways of selenium exposure and (2) patterns of rail occupancy and inter-marsh movements, estimated abundance, and regional population size of rail. For selenium-specific objectives, we sampled unfiltered surface water, midge larvae (Chironomidae), water boatmen (Corixidae), mosquitofish ( Gambusia spp.), and crayfish (Astacidae). Selenium samples were collected from 15 fixed sampling points, each in managed and unmanaged marshes, during late February, April, and June 2016, which corresponded to rail pre-nesting, nesting, and fledgling reproductive life-stages, respectively. Two areas within the two treatment types (managed versus unmanaged marsh) were of particular interest to help assess risks associated with changing sea dynamics and different water-management strategies: (1) a large unmanaged marsh (Morton Bay) unintentionally created in approximately 2008 when it became separated from the Salton Sea as water inflows began to drop and a berm formed from accumulated sediment and (2) a restored marsh (HZ9A) managed by the Sonny Bono Salton Sea National Wildlife Refuge, which is currently supplied with Colorado River water but may be sustained in the future by a blend of clean (that is, low selenium) Colorado River and agricultural drainage water with higher selenium from the Alamo River. Hence, baseline data for these marshes are important for future management decisions. We also report selenium concentrations in rail blood, head feathers, and breast feathers from rails captured as part of the movement study. Results indicated relatively higher risks from dietary selenium exposure for rails occupying unmanaged marshes compared to managed marshes and similar risks among unmanaged marshes. However, risks also were potentially elevated for rails occupying some managed marshes (that is, the Hazard Marshes), where relatively high proportions of Chironomidae and mosquitofish exceeded dietary thresholds for selenium effects on avian reproduction. For rail-specific objectives, we quantified occupancy and spatial distribution using call count data analyzed with imperfect detection models. Imperfect detection models allowed us to jointly estimate detection probability and abundance of detected rails in association with habitats. We then used estimates of detection probability and abundance at the habitat level to extrapolate rail population abundance for the Salton Sea region. Inter- and intra-marsh movements were described from over 5,000 locations obtained from 15 radio-marked rails. Resultant space use patterns indicated that, in general, selenium risk to individuals is not equally shared because of high levels of territoriality and very limited movement throughout the landscape. Moreover, the largest contiguous blocks of habitat are associated with unmanaged marshlands located on the former southeastern shoreline and outside traditional management areas and authorities. Thus, a substantial proportion of the rail population that is using unmanaged marsh on the southeastern shoreline may have disproportionate risk of elevated selenium exposure, yet how that risk translates to population-level effects remains unknown.

California↗

USGS2025

Updating and recalibrating the integrated Santa Rosa Plain Hydrologic Model to assess stream depletion and to simulate future climate and management scenarios in Santa Rosa, Sonoma County, California

The Santa Rosa Plain Hydrologic Model (SRPHM) was developed and published in 2014 through a collaboration between the U.S. Geological Survey (USGS) and Sonoma Water to analyze the hydrologic system in the Santa Rosa Plain watershed, help meet the increasing demand for fresh water, and prepare for future uncertainties in water resources. The original model simulated hydrological conditions and water use from water years 1975 to 2010. Recently (2023), the USGS, in cooperation with Sonoma Water and the California State Water Resources Control Board, updated the SRPHM model to extend its simulation period to the end of the 2018 calendar year, incorporate new estimates of rural and agricultural water use, and use efficient input format for climate variables. The updated model was recalibrated, and evaluation of the new model calibration is included in this report. This report presents the results of comparing the hydraulic heads, streamflow, and groundwater budget simulated by the updated model with those generated by the original model and observed data. The main difference in the simulated budget between the original and updated SRPHM is the estimates of agricultural pumping, rural domestic pumping, and return flow generated from rural water use that was not simulated in the original model. The revised agricultural pumping is simulated using the agricultural package, which constrains pumping to available groundwater. The use of the agricultural package leads to a more realistic estimation of agricultural water use, with revised agricultural pumping being one-third less than that in the original model. The revised rural pumping is about half of the pumping in the original model because of using detailed parcel data to estimate population density in rural areas instead of coarse census tracts. Overall, average total inflows for water years 2006–10 simulated by the updated model were about 2 percent less than the original model, and the average total updated outflows were nearly 5 percent less than the original model. The updated model was then used to generate stream depletion maps, simulate climate change scenarios during 2019–99, and simulate water rights allocation using the Model for Decision Support in Integrated River Basin Management (MODSIM). The results from simulating eight future climate scenarios indicated either an increase in groundwater storage or no significant change in the next 80 years, along with an increase in recharge, an increase in actual evapotranspiration in six out of eight climate projections, and an increase in surface runoff. The increases in the simulated future groundwater storage, recharge, evapotranspiration, and runoff in most climate projections are mainly driven by the projected increase in precipitation in most of the future climate scenarios. The updated model also was used to test a pilot case study demonstrating water-resource allocation among different users with different water rights using the integrated MODSIM-Groundwater and Surface-Water Flow Model (GSFLOW) platform. The updated SRPHM serves as a valuable tool for analyzing historical and future hydrologic conditions in the Santa Rosa Plain watershed and preparing for future uncertainties.

California↗

USGS1988

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in the Tulare Lake bed area, southern San Joaquin Valley, California, 1986-87

Concentrations of numerous toxic trace elements and pesticides were measured during 1986 in water, sediment, and biota from three areas near the Tulare Lake Bed, southern San Joaquin Valley, California: Kern National Wildlife Refuge, Pixley National Wildlife Refuge, and Westfarmers evaporation ponds about 5 mi west of Kern National Wildlife Refuge, to determine whether toxic constituents in agricultural-irrigation drainage pose a threat to beneficial uses of water, especially to uses by wildlife. Pesticide residues were found to be low at all three areas. Trace element concentrations were found to be comparatively low at the Kern and Pixley National Wildlife Refuge areas and high at the Westfarmers evaporation ponds. Dissolved selenium concentrations were < 1 micrograms/L (ug/L) in areas on and adjacent to the refuges, but ranged from 110 to 360 ug/L in the saline drainwater impounded in the evaporation ponds. The ratio of mean selenium concentrations in biota from Westfarmers ponds compared to biota from Kesterson National Wildlife Refuge (where adverse effects have been documented) is 5 for waterboatman, 2 for avocet liver, 1 for avocet eggs, and < 1 for widgeongrass. The low concentrations measured at Kern and Pixley National Wildlife Refuges suggest that trace elements and pesticides pose little threat to wildlife there; however, impounded subsurface drainage from agricultural irrigation does pose a threat to wildlife at the nearby Westfarmers ponds. Preliminary results of surveys conducted in 1987 indicated that there are adverse biological effects on shorebirds nesting at the ponds, although interpretation of the magnitude of the effects is premature, pending completion of ongoing studies by the U.S. Fish and Wildlife Service. (Author 's abstract)

Water-Resources Investigations Report↗

USGS2009

Water Budgets of the Walker River Basin and Walker Lake, California and Nevada

The Walker River is the main source of inflow to Walker Lake, a closed-basin lake in west-central Nevada. The only outflow from Walker Lake is evaporation from the lake surface. Between 1882 and 2008, upstream agricultural diversions resulted in a lake-level decline of more than 150 feet and storage loss of 7,400,000 acre-feet. Evaporative concentration increased dissolved solids from 2,500 to 17,000 milligrams per liter. The increase in salinity threatens the survival of the Lahontan cutthroat trout, a native species listed as threatened under the Endangered Species Act. This report describes streamflow in the Walker River basin and an updated water budget of Walker Lake with emphasis on the lower Walker River basin downstream from Wabuska, Nevada. Water budgets are based on average annual flows for a 30-year period (1971-2000). Total surface-water inflow to the upper Walker River basin upstream from Wabuska was estimated to be 387,000 acre-feet per year (acre-ft/yr). About 223,000 acre-ft/yr (58 percent) is from the West Fork of the Walker River; 145,000 acre-ft/yr (37 percent) is from the East Fork of the Walker River; 17,000 acre-ft/yr (4 percent) is from the Sweetwater Range; and 2,000 acre-ft/yr (less than 1 percent) is from the Bodie Mountains, Pine Grove Hills, and western Wassuk Range. Outflow from the upper Walker River basin is 138,000 acre-ft/yr at Wabuska. About 249,000 acre-ft/yr (64 percent) of inflow is diverted for irrigation, transpired by riparian vegetation, evaporates from lakes and reservoirs, and recharges alluvial aquifers. Stream losses in Antelope, Smith, and Bridgeport Valleys are due to evaporation from reservoirs and agricultural diversions with negligible stream infiltration or riparian evapotranspiration. Diversion rates in Antelope and Smith Valleys were estimated to be 3.0 feet per year (ft/yr) in each valley. Irrigated fields receive an additional 0.8 ft of precipitation, groundwater pumpage, or both for a total applied-water rate of 3.8 ft/yr. The average corrected total evapotranspiration rate for alfalfa is 3.2 ft/yr so about 0.6 ft/yr (15 percent) flushes salts from the soil. The diversion rate in Bridgeport Valley was estimated to be 1.1 ft/yr and precipitation is 1.3 ft/yr. The total applied-water rate of 2.4 ft/yr is used to irrigate pasture grass. The total applied water rate in the East Fork of the Walker River and Mason Valley was estimated to be 4.8 ft/yr in each valley. The higher rate likely is due to appreciable infiltration, riparian evapotranspiration, or both. Assuming a diversion rate of 3.0 ft/yr, stream loss due to infiltration and riparian evapotranspiration is about 3,000 acre-ft/yr along the East Fork of the Walker River and 14,000 acre-ft/yr in Mason Valley. In the lower Walker River basin, overall and groundwater budgets were calculated for Wabuska to Schurz, Nev., and Schurz to Walker Lake. An overall water budget was calculated for the combined reaches. Imbalances in the water budgets range from 1 to 7 percent, which are insignificant statistically, so the water budgets balance. Total inflow to the Wabuska-Walker Lake reach from the river and others sources is 140,000 acre-ft/yr. Stream and subsurface discharge into the northern end of Walker Lake totals 110,000 acre-ft/yr. About 30,000 acre-ft/yr is lost on the Walker River Indian Reservation from agricultural evapotranspiration, evapotranspiration by native and invasive vegetation, domestic pumpage, and subsurface outflow from the basin through Double Spring and the Wabuska lineament. Alfalfa fields in the upper Walker River basin are lush and have an average corrected total evapotranspiration rate of 3.2 ft/yr. Alfalfa fields on the Walker River Indian Reservation are not as lush and have a total corrected evapotranspiration rate of 1.6-2.1 ft/yr, which partly could be due to alkaline soils that were submerged by Pleistocene Lake Lahontan. The total applied-water rate is 7.0 ft/yr, almost twice the

Scientific Investigations Report↗

USGS1985

Chemical quality of ground water in Yolo and Solano counties, California

Ground-water-quality conditions were investigated in Yolo and Solano Counties during the summers of 1980 and 1981 by sampling 188 representative wells. Chemical analyses of the water samples show that the ground water is suitable for domestic and most agricultural purposes. Water samples from wells near the Sacramento River generally contained lower concentrations of dissolved solids and higher concentrations of trace elements than the rest of the study area. Ninety percent of the water sampled had a dissolved-solids concentration of less than 850 milligrams per liter. Chemical water types varied, with 72 percent of the wells sampled containing either sodium bicarbonate, magnesium bicarbonate, sodium-magnesium bicarbonate , or magnesium-sodium bicarbonate type water. A large part of the study area contains ground water with boron concentrations that exceed tolerance levels for many crops. Other toxic trace elements were present in negligible amounts. (USGS)

Water-Resources Investigations Report↗

USGS2012

Groundwater quality in the Mojave area, California

California↗

USGS2012

Groundwater quality in the Colorado River basins, California

Arizona, California↗

USGS2015

Defining population structure and genetic signatures of decline in the giant garter snake ( Thamnophis gigas ): implications for conserving threatened species within highly altered landscapes

Anthropogenic habitat fragmentation can disrupt the ability of species to disperse across landscapes, which can alter the levels and distribution of genetic diversity within populations and negatively impact long-term viability. The giant gartersnake ( Thamnophis gigas ) is a state and federally threatened species that historically occurred in the wetland habitats of California’s Great Central Valley. Despite the loss of 93 % of historic wetlands throughout the Central Valley, giant gartersnakes continue to persist in relatively small, isolated patches of highly modified agricultural wetlands. Gathering information regarding genetic diversity and effective population size represents an essential component for conservation management programs aimed at this species. Previous mitochondrial sequence studies have revealed historical patterns of differentiation, yet little is known about contemporary population structure and diversity. On the basis of 15 microsatellite loci, we estimate population structure and compare indices of genetic diversity among populations spanning seven drainage basins within the Central Valley. We sought to understand how habitat loss may have affected genetic differentiation, genetic diversity and effective population size, and what these patterns suggest in terms of management and restoration actions. We recovered five genetic clusters that were consistent with regional drainage basins, although three northern basins within the Sacramento Valley formed a single genetic cluster. Our results show that northern drainage basin populations have higher connectivity than among central and southern basins populations, and that greater differentiation exists among the more geographically isolated populations in the central and southern portion of the species’ range. Genetic diversity measures among basins were significantly different, and were generally lower in southern basin populations. Levels of inbreeding and evidence of population bottlenecks were detected in about half the populations we sampled, and effective population size estimates were well below recommended minimum thresholds to avoid inbreeding. Efforts focused on maintaining and enhancing existing wetlands to facilitate dispersal between basins and increase local effective population sizes may be critical for these otherwise isolated populations.

Conservation Genetics↗

USGS2002

Chemical evolution of the Salton Sea, California: Nutrient and selenium dynamics

The Salton Sea is a 1000-km 2 terminal lake located in the desert area of southeastern California. This saline (∼44 000 mg l −1 dissolved solids) lake started as fresh water in 1905–07 by accidental flooding of the Colorado River, and it is maintained by agricultural runoff of irrigation water diverted from the Colorado River. The Salton Sea and surrounding wetlands have recently acquired substantial ecological importance because of the death of large numbers of birds and fish, and the establishment of a program to restore the health of the Sea. In this report, we present new data on the salinity and concentration of selected chemicals in the Salton Sea water, porewater and sediments, emphasizing the constituents of concern: nutrients (N and P), Se and salinity. Chemical profiles from a Salton Sea core estimated to have a sedimentation rate of 2.3 mm yr −1 show increasing concentrations of OC, N, and P in younger sediment that are believed to reflect increasing eutrophication of the lake. Porewater profiles from two locations in the Sea show that diffusion from bottom sediment is only a minor source of nutrients to the overlying water as compared to irrigation water inputs. Although loss of N and Se by microbial-mediated volatilization is possible, comparison of selected element concentrations in river inputs and water and sediments from the Salton Sea indicates that most of the N (from fertilizer) and virtually all of the Se (delivered in irrigation water from the Colorado River) discharged to the Sea still reside within its bottom sediment. Laboratory simulation on mixtures of sediment and water from the Salton Sea suggest that sediment is a potential source of N and Se to the water column under aerobic conditions. Hence, it is important that any engineered changes made to the Salton Sea for remediation or for transfer of water out of the basin do not result in remobilization of nutrients and Se from the bottom sediment into the overlying water.

California↗

USGS2009

Using nitrate dual isotopic composition (δ15N and δ18O) as a tool for exploring sources and cycling of nitrate in an estuarine system: Elkhorn Slough, California

Nitrate (NO 3 − ) concentrations and dual isotopic composition ( δ 15 N and δ 18 O) were measured during various seasons and tidal conditions in Elkhorn Slough to evaluate mixing of sources of NO 3 − within this California estuary. We found the isotopic composition of NO 3 − was influenced most heavily by mixing of two primary sources with unique isotopic signatures, a marine (Monterey Bay) and terrestrial agricultural runoff source (Old Salinas River). However, our attempt to use a simple two end‐member mixing model to calculate the relative contribution of these two NO 3 − sources to the Slough was complicated by periods of nonconservative behavior and/or the presence of additional sources, particularly during the dry season when NO 3 − concentrations were low. Although multiple linear regression generally yielded good fits to the observed data, deviations from conservative mixing were still evident. After consideration of potential alternative sources, we concluded that deviations from two end‐member mixing were most likely derived from interactions with marsh sediments in regions of the Slough where high rates of NO 3 − uptake and nitrification result in NO 3 − with low δ 15 N and high δ 18 O values. A simple steady state dual isotope model is used to illustrate the impact of cycling processes in an estuarine setting which may play a primary role in controlling NO 3 − isotopic composition when and where cycling rates and water residence times are high. This work expands our understanding of nitrogen and oxygen isotopes as biogeochemical tools for investigating NO 3 − sources and cycling in estuaries, emphasizing the role that cycling processes may play in altering isotopic composition.

California↗