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USGS2025

Shifting baselines of coral-reef species composition from the Late Pleistocene to the present in the Florida Keys

The ongoing global-scale reassembly of modern coral reefs is unprecedented compared with the observed stability of most late Quaternary reef assemblages. One notable exception is the marine isotope stage (MIS) 5e ( ca 130–116 thousand years ago [ka]) reefs in the Florida Keys, where the ubiquitous shallow-water coral, Acropora palmata , was near absent. Little is known, however, about reefs that grew during MIS5d–a ( ca 116–74 ka), between MIS5e and the Holocene. It is therefore unclear whether Florida's unique MIS5e coral assemblages represent a geologically brief anomaly or a more persistent departure from the western Atlantic coral-reef archetype. We addressed that question by reconstructing the composition of MIS5d–a reefs within 29 coral-reef cores collected throughout the Florida Keys. We then compared the relative composition of corals during MIS5d–a to existing datasets from MIS5e, Holocene and modern (1996 and 2022) reefs to evaluate how far today's reef assemblages have diverged from geological baselines. We show that although the proportion of reef frameworks built by corals was remarkably consistent ( ca 38%), species composition changed significantly through time. Acropora palmata was rare throughout MIS5, which we hypothesise was due to greater cold-temperature stress in Florida's subtropical reefs compared with the more climatically stable tropics. In contrast, the massive reef-building coral, Orbicella spp., was regionally dominant throughout the late Quaternary, but has become increasingly rare on modern reefs. By 2022, reefs in the Florida Keys were characterised by a truly novel coral assemblage dominated by Porites astreoides and Siderastrea siderea . In many ways, Florida's reefs defy the concept of a natural baseline; instead, their most persistent characteristic since the Late Pleistocene is their uniqueness. Yet, as reefs are increasingly subjected to unprecedented levels of environmental change, the exceptions to what was normal in the past could, paradoxically, provide the best geological analogues for the future.

Florida↗

USGS2012

A brief history and summary of the effects of river engineering and dams on the Mississippi River system and delta

The U.S. Geological Survey Forecast Mekong project is providing technical assistance and information to aid management decisions and build science capacity of institutions in the Mekong River Basin. A component of this effort is to produce a synthesis of the effects of dams and other engineering structures on large-river hydrology, sediment transport, geomorphology, ecology, water quality, and deltaic systems. The Mississippi River Basin (MRB) of the United States was used as the backdrop and context for this synthesis because it is a continental scale river system with a total annual water discharge proportional to the Mekong River, has been highly engineered over the past two centuries, and the effects of engineering have been widely studied and documented by scientists and engineers. The MRB is controlled and regulated by dams and river-engineering structures. These modifications have resulted in multiple benefits including navigation, flood control, hydropower, bank stabilization, and recreation. Dams and other river-engineering structures in the MRB have afforded the United States substantial socioeconomic benefits; however, these benefits also have transformed the hydrologic, sediment transport, geomorphic, water-quality, and ecologic characteristics of the river and its delta. Large dams on the middle Missouri River have substantially reduced the magnitude of peak floods, increased base discharges, and reduced the overall variability of intraannual discharges. The extensive system of levees and wing dikes throughout the MRB, although providing protection from intermediate magnitude floods, have reduced overall channel capacity and increased flood stage by up to 4 meters for higher magnitude floods. Prior to major river engineering, the estimated average annual sediment yield of the Mississippi River Basin was approximately 400 million metric tons. The construction of large main-channel reservoirs on the Missouri and Arkansas Rivers, sedimentation in dike fields, and protection of channel banks by revetments throughout the basin, have reduced the overall sediment yield of the MRB by more than 60 percent. The primary alterations to channel morphology by dams and other engineering projects have been (1) channel simplification and reduced dynamism; (2) lowering of channel-bed elevation; and (3) disconnection of the river channel from the flood plain, except during extreme flood events. Freshwater discharge from the Mississippi River and its associated sediment and nutrient loads strongly influence the physical and biological components in the northern Gulf of Mexico. Ninety percent of the nitrogen load reaching the Gulf of Mexico is from nonpoint sources with about 60 percent coming from fertilizer and mineralized soil nitrogen. Much of the phosphorus is from animal manure from pasture and rangelands followed by fertilizer applied to corn and soybeans. Increased nutrient enrichment in the northern Gulf of Mexico has resulted in the degradation of water quality as more phytoplankton grow, which increases turbidity and depletes oxygen in the lower depths creating what is known as the "dead zone." In 2002, the dead zone was 22,000 square kilometers (km2), an area similar to the size of the State of Massachusetts. Changes in the flow regime from engineered structures have had direct and indirect effects on the fish communities. The navigation pools in the upper Mississippi River have aged, and these overwintering habitats, which were created when the pools filled, have declined as sedimentation reduces water depth. Reproduction of paddlefish may have been adversely affected by dams, which impede access to suitable spawning habitats. Fishes that inhabit swift-current habitats in the unimpounded lower Mississippi River have not declined as much as in the upper Mississippi River. The decline of the pallid sturgeon may be attributable to channelization of the Missouri River above St. Louis, Missouri. The Missouri River supports a rich fish community and remains relatively intact. Nevertheless, the widespread and long history of human intervention in river discharge has contributed to the declines of about 25 percent of the species. The Mississippi River Delta Plain is built from six delta complexes composed of a massive area of coastal wetlands that support the largest commercial fishery in the conterminous United States. Since the early 20th century, approximately 4,900 km2 of coastal lands have been lost in Louisiana. One of the primary mechanisms of wetland loss on the Plaquemines-Balize complex is believed to be the disconnection of the river distributary network from the delta plain by the massive system of levees on the delta top, which prevent overbank flooding and replenishment of the delta top by sediment and nutrient deliveries. Efforts by Federal and State agencies to conserve and restore the Mississippi River Delta Plain began over three decades ago and have accelerated over the past decade. Regardless of these efforts, however, land losses are expected to continue because the reduced upstream sediment supplies are not sufficient to keep up with the projected depositional space being created by the combined forces of delta plain subsidence and global sea-level rise.

Alabama;Alberta;Arkansas;Colorado;Georgia;Illinois↗

USGS2012

National assessment of shoreline change: Historical shoreline change in the Hawaiian Islands

Sandy beaches of the United States are some of the most popular tourist and recreational destinations. Coastal property constitutes some of the most valuable real estate in the country. Beaches are an ephemeral environment between water and land with unique and fragile natural ecosystems that have evolved in equilibrium with the ever-changing winds, waves, and water levels. Beachfront lands are the site of intense residential and commercial development even though they are highly vulnerable to several natural hazards, including marine inundation, flooding and drainage problems, effects of storms, sea-level rise, and coastal erosion. Because the U.S. population continues to shift toward the coast where valuable coastal property is vulnerable to erosion, the U.S. Geological Survey (USGS) is conducting a national assessment of coastal change. One aspect of this effort, the National Assessment of Shoreline Change, uses shoreline position as a proxy for coastal change because shoreline position is one of the most commonly monitored indicators of environmental change (for example, Fletcher, 1992; Dolan and others, 1991; Douglas and others, 1998; Galgano and others, 1998). Additionally, the National Research Council (1990) recommended the use of historical shoreline analysis in the absence of a widely accepted model of shoreline change. A principal purpose of the USGS shoreline change research is to develop a common methodology so that shoreline change analyses for the continental U.S., portions of Hawaii, and Alaska can be updated periodically in a consistent and systematic manner. The primary objectives of this study were to (1) develop and implement improved methods of assessing and monitoring shoreline movement, and (2) improve current understanding of the processes controlling shoreline movement. Achieving these ongoing long-term objectives requires research that (1) examines the original sources of shoreline data (for example, maps, air photos, global positioning system (GPS), Light Detection and Ranging (lidar)); (2) evaluates the utility of different shoreline proxies (for example, geomorphic feature, water mark, tidal datum, elevation), including the errors associated with each; (3) investigates bias and potential errors associated with integrating different shoreline proxies from different sources; (4) develops standard, uniform methods of shoreline change analysis; (5) examines the effects of human activities on shoreline movement and rates of change; and (6) investigates alternative mathematical methods for calculating historical rates of change and uncertainties associated with them. This report summarizes historical shoreline changes on the three most densely populated islands of the eight main Hawaiian Islands: Kauai, Oahu, and Maui. The report emphasizes the hazard from “chronic” (decades to centuries) erosion at regional scales and strives to relate this hazard to the body of knowledge regarding coastal geology of Hawaii because of its potential impact on natural resources, the economy, and society. Results are organized by coastal regions (island side) and sub-regions (common littoral characteristics). This report of Hawaii coasts is part of a series of reports that include text summarizing methods, results, and implications of the results. In addition, geographic information system (GIS) data used in the analyses are made available for download (Romine and others, 2012). The rates of shoreline change and products presented in this report are not intended for site-specific analysis of shoreline movement, nor are they intended to replace any official source of shoreline change information identified by local or State government agencies, or other Federal entities that are used for regulatory purposes. Rates of shoreline change presented herein may differ from other published rates, and differences do not necessarily indicate that the other rates are inaccurate. Some discrepancies are to be expected, considering the many possible ways of determining shoreline positions and rates of change, and the inherent uncertainty in calculating these rates. Rates of shoreline change presented in this report represent shoreline movement under past conditions and are not intended for use in predicting future shoreline positions or future rates of shoreline change.

Hawai'i↗

USGS2020

Millennial-scale climate and human drivers of environmental change and fire activity in a dry, mixed-conifer forest of northwestern Montana

Warm summer temperatures and longer fire seasons are promoting larger, and in some cases, more fires that are severe in low- and mid-elevation, dry mixed-conifer forests of the Northern Rocky Mountains (NRM). Long-term historical fire conditions and human influence on past fire activity are not well understood for these topographically and biophysically heterogeneous forests. We developed reconstructions of millennial-scale fire activity, vegetation change, and human presence at Black Lake, a small closed-basin lake on the Flathead Indian Reservation in the Mission Valley, Northwestern Montana, United States. Fossil pollen, charcoal, and biomarkers associated with human presence were used to evaluate the interaction between climate variability, fire activity, vegetation change and human activity for the past 7000 years. Comparisons among multiple proxies suggest climate variability acted as the primary control on fire activity and vegetation change from the early Holocene until the late Holocene when records suggest fire activity and climate variability decoupled. Specific biomarkers (5β-stanols including coprostanol and epi-coprostanol) associated with human presence indicate humans were present within the Black Lake watershed for thousands of years, although the inferred intensity of human presence is highly variable. A strong relationship between climate variability and fire activity during the early and mid-Holocene weakens during the last few thousand years, suggesting possible increased influence of humans in mediating fire activity in recent millennia, and/or a shift in the interaction between the distribution and abundance of woody fuel and fire severity. Human-set fires during the cooler and wetter late Holocene may have been aimed at maintaining important cultural resources associated with the heterogeneous mosaic of mixed conifer forests within the Black Lake watershed. The paleoenvironmental reconstruction at Black Lake corroborates archeological records that show humans were present within the Black Lake watershed for over 7000 years. Further research is needed to evaluate the evidence for this continuous presence and the possible role that people played in shaping fire regimes and vegetation within low- to mid-elevation mixed-conifer ecosystems of the NRM.

Montana↗

USGS2024

Bringing traits back in the equation: A roadmap to understand species redistribution

Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift–trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.

Global Change Biology↗

USGS2023

Bee species richness through time in an urbanizing landscape of the southeastern United State

Compared to non-urban environments, cities host ecological communities with altered taxonomic diversity and functional trait composition. However, we know little about how these urban changes take shape over time. Using historical bee (Apoidea: Anthophila) museum specimens supplemented with online repositories and researcher collections, we investigated whether bee species richness tracked urban and human population growth over the past 118 years. We also determined which species were no longer collected, whether those species shared certain traits, and if collector behavior changed over time. We focused on Wake County, North Carolina, United States where human population size has increased over 16 times over the last century along with the urban area within its largest city, Raleigh, which has increased over four times. We estimated bee species richness with occupancy models, and rarefaction and extrapolation curves to account for imperfect detection and sample coverage. To determine if bee traits correlated with when species were collected, we compiled information on native status, nesting habits, diet breadth, and sociality. We used non-metric multidimensional scaling to determine if individual collectors contributed different bee assemblages over time. In total, there were 328 species collected in Wake County. We found that although bee species richness varied, there was no clear trend in bee species richness over time. However, recent collections (since 2003) were missing 195 species, and there was a shift in trait composition, particularly lost species were below-ground nesters. The top collectors in the dataset differed in how often they collected bee species, but this was not consistent between historic and contemporary time periods; some contemporary collectors grouped closer together than others, potentially due to focusing on urban habitats. Use of historical collections and complimentary analyses can fill knowledge gaps to help understand temporal patterns of species richness in taxonomic groups that may not have planned long-term data.

North Carolina↗

USGS2016

Reconstructing surface ocean circulation with 129 I time series records from corals

The long-lived radionuclide 129 I (half-life: 15.7 × 10 6 yr) is well-known as a useful environmental tracer. At present, the global 129 I in surface water is about 1–2 orders of magnitude higher than pre-1960 levels. Since the 1990s, anthropogenic 129 I produced from industrial nuclear fuels reprocessing plants has been the primary source of 129 I in marine surface waters of the Atlantic and around the globe. Here we present four coral 129 I time series records from: 1) Con Dao and 2) Xisha Islands, the South China Sea, 3) Rabaul, Papua New Guinea and 4) Guam. The Con Dao coral 129 I record features a sudden increase in 129 I in 1959. The Xisha coral shows similar peak values for 129 I as the Con Dao coral, punctuated by distinct low values, likely due to the upwelling in the central South China Sea. The Rabaul coral features much more gradual 129 I increases in the 1970s, similar to a published record from the Solomon Islands. The Guam coral 129 I record contains the largest measured values for any site, with two large peaks, in 1955 and 1959. Nuclear weapons testing was the primary 129 I source in the Western Pacific in the latter part of the 20th Century, notably from testing in the Marshall Islands. The Guam 1955 peak and Con Dao 1959 increases are likely from the 1954 Castle Bravo test, and the Operation Hardtack I test is the most likely source of the 1959 peak observed at Guam. Radiogenic iodine found in coral was carried primarily through surface ocean currents. The coral 129 I time series data provide a broad picture of the surface distribution and depth penetration of 129 I in the Pacific Ocean over the past 60 years.

Journal of Environmental Radioactivity↗

USGS2013

AMAP Assessment 2013: Arctic Ocean acidification

This assessment report presents the results of the 2013 AMAP Assessment of Arctic Ocean Acidification (AOA). This is the first such assessment dealing with AOA from an Arctic-wide perspective, and complements several assessments that AMAP has delivered over the past ten years concerning the effects of climate change on Arctic ecosystems and people. The Arctic Monitoring and Assessment Programme (AMAP) is a group working under the Arctic Council. The Arctic Council Ministers have requested AMAP to: - produce integrated assessment reports on the status and trends of the conditions of the Arctic ecosystems; - identify possible causes for the changing conditions; - detect emerging problems, their possible causes, and the potential risk to Arctic ecosystems including indigenous peoples and other Arctic residents; and to - recommend actions required to reduce risks to Arctic ecosystems. This report provides the accessible scientific basis and validation for the statements and recommendations made in the Arctic Ocean Acidification Assessment Summary for Policy-makers that was delivered to Arctic Council Ministers at their meeting in Kiruna, Sweden in May 2011 and the related AMAP State of the Arctic Environment report Arctic Ocean Acidification 2013: An Overview . It includes extensive background data and references to the scientific literature, and details the sources for figures reproduced in the overview report. Whereas the Summary for Policy-makers report contains recommendations that focus mainly on policy-relevant actions concerned with addressing the consequences of AOA, the conclusions and recommendations presented in this report also cover issues of a more scientific nature, such as proposals for filling gaps in knowledge, and recommendations relevant to future monitoring and research work. The AOA assessment was conducted between 2010 and 2013 by an international group of over 60 experts. Lead authors were selected based on an open nomination process coordinated by AMAP. A similar process was used to select international experts who independently reviewed this report. Information contained in this report is fully references and based on first and foremost peer-reviewed and published results of research and monitoring undertaken since 2006. It also incorporates some new (unpublished) information from monitoring and research conducted according to well-established and documented national and international standards of quality assurance/quality control protocols. Care has been taken to ensure that no critical probability statements are based on non-peer-reviewed materials. Access to reliable and up-to-date information is essential for the development of science-based decision-making regarding ongoing changes in the Arctic and their global implications. The AOA assessment summary reports and films have therefore been developed specifically for policy-makers, summarizing the main findings of the AOA assessment. The AOA lead authors have confirmed that both this report and its derivative products accurately and fully reflect their scientific assessment. The AOA reports and the films are freely available from the AMAP Secretariat and on the AMAP website: www.amap.no, and their use for educational purposes is encouraged. AMAP would like to express its appreciation to all experts who have contributed their time, efforts and data, in particular the lead authors who coordinated the production of this report. Thanks are also due to the reviewers who contributed to the AOA peer-review process and provided valuable comments that helped to ensure the quality of the report. A list of the main contributors is included at the start of each chapter. The list is not comprehensive. Specifically, it does not include the many national institutes, laboratories and organizations, and their staff, which have been involved in various countries in AOA-related monitoring and research. Apologies, and no lesser thanks are given to any individuals unintentionally omitted from the list. The support from the Arctic countries and non-Arctic countries implementing research and monitoring in the Arctic is vital to the success of AMAP. The AMAP work is essentially based on ongoing activities within these countries, and the countries that provide the necessary support for most the experts involved in the preparation of the AMAP assessments. In particular, AMAP would like to acknowledge Norway for taking the lead-country role in this assessment and thank Canada, Norway, Sweden, USA and the Nordic Council of Ministers for their financial support to the AOA work. The AMAP Working Group is pleased to present its assessment to the Arctic Council and the international science community. Richard Bellerby (AOA assessment Chair) Russel Shearer (AMAP Chair) Lars-Otto Reiersen (AMAP Executive Secretary) Oslo, May 2013

Report↗

USGS1999

Demography of the Yellowstone grizzly bears

We undertook a demographic analysis of the Yellowstone grizzly bears ( Ursus arctos ) to identify critical environmental factors controlling grizzly bear vital rates, and thereby to help evaluate the effectiveness of past management and to identify future conservation issues. We concluded that, within the limits of uncertainty implied by the available data and our methods of data analysis, the size of the Yellowstone grizzly bear population changed little from 1975 to 1995. We found that grizzly bear mortality rates are about double in years when the whitebark pine crop fails than in mast years, and that the population probably declines when the crop fails and increases in mast years. Our model suggests that natural variation in whitebark pine crop size over the last two decades explains more of the perceived fluctuations in Yellowstone grizzly population size than do other variables. Our analysis used demographic data from 202 radio-telemetered bears followed between 1975 and 1992 and accounted for whitebark pine ( Pinus albicaulis ) crop failures during 1993–1995. We used a maximum likelihood method to estimate demographic parameters and used the Akaike Information Criteria to judge the significance of various independent variables. We identified no independent variables correlated with grizzly bear fecundity. In order of importance, we found that grizzly bear mortality rates are correlated with season, whitebark pine crop size (mast vs. nonmast year), sex, management-trapping status (never management-trapped vs. mangement-trapped once or more), and age. The mortality rate of bears that were management-trapped at least once was almost double that of bears that were never management-trapped, implying a source/sink (i.e., never management-trapped/management-trapped) structure. The rate at which bears move between the source and sink, estimated as the management-trapping rate ( h ), is critical to estimating the finite rate of increase, λ͞ . We quantified h by estimating the rate at which bears that have never been management-trapped are management-trapped for the first time. It differed across seasons, was higher in nonmast than mast years, and varied with age. We calculate that λ͞ = 1.00 from 1975 to 1983 (four mast and five nonmast years) and 1.02 from 1984 to 1995 (seven mast and five nonmast years). Overall, we find that λ͞ = 1.01 ± 0.04 (mean ± 1 se ) from 1975 to 1995. Our models suggest that future management should concentrate on the threats to whitebark pine, such as those posed by white pine blister rust, global warming, and fire suppression. As is currently widely recognized by Yellowstone land managers, our model also suggests that future management must compensate for the increased grizzly bear mortality that is likely to be caused by an increasing number of humans in Yellowstone.

Idaho, Montana, Wyoming↗

USGS2022

Role of landscape features in resource selection by female Greater Prairie-chickens within a constrained environment

Greater Prairie-chickens ( Tympanuchus cupido ) historically occupied 20 states within the contiguous United States; however, due to habitat degradation and loss, they are currently found in 11 states, only four of which have a stable population. Kansas supports a relatively large abundance of Greater Prairie-chickens, where the Flint Hills ecoregion historically supported the largest population density of all ecoregions. In the past decade, the Flint Hills population has declined by 75 % to an estimated 8,334 individuals in 2021 from 34,180 individuals in 2015 due to landscape changes and intensification of grassland management practices. The Fort Riley Military Reservation in the northwest portion of the Flint Hills ecoregion is one of a few areas within the ecoregion that does not implement grazing or vast annual burning. The Greater Prairie-chicken population within Fort Riley has remained relatively stable over the past 25 years despite being constrained by surrounding landscape features and development. We analyzed multiple scales of resource selection by 46 female Greater Prairie-chickens during March-April 2019–2021 on Fort Riley to investigate why this population is doing relatively well compared to populations in surrounding areas. We tested landscape feature, vegetation, and burn mosaic variables to evaluate which variables had the greatest influence on resource selection. Landscape features had the greatest influence on resource selection. Females avoided trees within Fort Riley for both breeding season use and nest-site selection at a greater margin than any other study in Kansas. Additionally, fourth-order selection was not evident within this study system, contrary to studies within surrounding areas. Our findings join a growing body of literature that suggests containment of woody encroachment as a high priority for managers to maintain or expand prairie grouse habitat in many different environments. This containment is especially critical on Fort Riley because of its constrained environment, and further woody encroachment could lead to loss of habitat that is inescapable by the Greater Prairie-chicken population on Fort Riley. Spatially-explicit evaluations of habitat availability are increasingly important as more areas within the Greater Prairie-chicken range become constrained by urbanization, agricultural expansion, and intensive management practices.

Kansas↗

USGS2015

Geologic map of Kundelan ore deposits and prospects, Zabul Province, Afghanistan; modified from the 1971 original map compilations of K.I. Litvinenko and others

This map and cross sections are redrafted modified versions of the Geological map of the Kundelan ore deposit area, scale 1:10,000 (graphical supplement no. 18) and the Geological map of the Kundelan deposits, scale 1:2,000 (graphical supplement no. 3) both contained in an unpublished Soviet report by Litvinenko and others (1971) (report no. 0540). The unpublished Soviet report was prepared in cooperation with the Ministry of Mines and Industries of the Royal Government of Afghanistan in Kabul during 1971. This redrafted map and cross sections illustrate the geology of the main Kundelan copper-gold skarn deposit, located within the Kundelan copper and gold area of interest (AOI), Zabul Province, Afghanistan. Areas of interest (AOIs) of non-fuel mineral resources within Afghanistan were first described and defined by Peters and others (2007) and later by the work of Peters and others (2011a). The location of the main Kundelan copper-gold skarn deposit (area of this map) and the Kundelan copper and gold AOI is shown on the index map provided on this map sheet. The estimated resources of the Kundelan copper-gold skarn deposit are 21,400 metric tons (t) of copper, 1.6 t of gold, and 133.4 t of molybdenum at an average grade of 1.21 weight percent (wt. %) copper (ranging from 0.66 to 4.03 wt. % copper); 0.9 grams per metric ton (g/t) gold (ranging from 0.3 to 3.1 g/t gold); 0.14 wt. % molybdenum; and as much as 10 g/t silver and 0.03 wt. % bismuth (Peters and others, 2011b). Small past production of gold and base metals is also reported by Douvgal and others (1971) from many prospects within the Kundelan copper and gold AOI. Outside the skarn areas, argillic hydrothermal alteration is present (Abdullah and others, 1977). Most copper and gold prospects in the Kundelan copper and gold AOI are reported to contain commercial-grade ores of copper and (or) gold, and many prospect areas have potential for these commodities to be discovered in commercial volumes. Future initial mine exploration and later development in many of the prospects, and specifically in the Kundelan copper-gold skarn deposit, could result in near-term small- to medium-sized gold mining operations (Peters and others, 2011b). The redrafted map and cross sections reproduce the topology of rock units, contacts, faults, and so forth, of the original Soviet map and cross sections, and they include modifications based on our examination of these documents and our observations made during a brief field visit in August of 2010. We have attempted to translate the original Russian terminology and rock classifications into modern English geologic usage as literally as possible without changing any genetic or process-oriented implications in the original descriptions. We also use the age designations from the original Soviet maps, except for the phase I and II intrusive igneous rocks. Phase I and II igneous rocks are reassigned an Early Cretaceous age (from lower Paleogene) based on a uranium-lead (U-Pb) zircon SHRIMP analysis from quartz diorite, which yielded an age of 104±1 Ma (mega-annum). The information provided in the description of map units is from both the source report by Litvinenko and others (1971) and the original 1:10,000 scale map (graphical supplement no. 18), also from Litvinenko and others (1971). Because of the poor quality of the original map, some map features could not be identified and some features may be misinterpreted. The rock unit colors used on the redrafted maps and cross sections differ from the colors shown on the original Soviet version. Colors were selected according to the color and pattern scheme of the Commission for the Geological Map of the World (CGMW) at http://www.ccgm.org. Elevations on the cross sections are derived from the original Soviet topography and may not match the Global Digital Elevation Model (GDEM) topography used on the redrafted map of this report. Most hydrography derived from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) has not been included on our redrafted version of the map because of a poor fit with alluvial deposits from the unmodified original Soviet map (graphical supplement no. 18; Litvinenko and others, 1971).

Zabul Province↗

USGS2007

Fault locking, block rotation and crustal deformation in the Pacific Northwest

We interpret Global Positioning System (GPS) measurements in the northwestern United States and adjacent parts of western Canada to describe relative motions of crustal blocks, locking on faults and permanent deformation associated with convergence between the Juan de Fuca and North American plates. To estimate angular velocities of the oceanic Juan de Fuca and Explorer plates and several continental crustal blocks, we invert the GPS velocities together with seafloor spreading rates, earthquake slip vector azimuths and fault slip azimuths and rates. We also determine the degree to which faults are either creeping aseismically or, alternatively, locked on the block-bounding faults. The Cascadia subduction thrust is locked mainly offshore, except in central Oregon, where locking extends inland. Most of Oregon and southwest Washington rotate clockwise relative to North America at rates of 0.4–1.0 ° Myr −1 . No shear or extension along the Cascades volcanic arc has occurred at the mm/yr level during the past decade, suggesting that the shear deformation extending northward from the Walker Lane and eastern California shear zone south of Oregon is largely accommodated by block rotation in Oregon. The general agreement of vertical axis rotation rates derived from GPS velocities with those estimated from palaeomagnetic declination anomalies suggests that the rotations have been relatively steady for 10–15 Ma. Additional permanent dextral shear is indicated within the Oregon Coast Range near the coast. Block rotations in the Pacific Northwest do not result in net westward flux of crustal material—the crust is simply spinning and not escaping. On Vancouver Island, where the convergence obliquity is less than in Oregon and Washington, the contractional strain at the coast is more aligned with Juan de Fuca—North America motion. GPS velocities are fit significantly better when Vancouver Island and the southern Coast Mountains move relative to North America in a block-like fashion. The relative motions of the Oregon, western Washington and Vancouver Island crustal blocks indicate that the rate of permanent shortening, the type that causes upper plate earthquakes, across the Puget Sound region is 4.4 ± 0.3 mm yr −1 . This shortening is likely distributed over several faults but GPS data alone cannot determine the partitioning of slip on them. The transition from predominantly shear deformation within the continent south of the Mendocino Triple Junction to predominantly block rotations north of it is similar to changes in tectonic style at other transitions from shear to subduction. This similarity suggests that crustal block rotations are enhanced in the vicinity of subduction zones possibly due to lower resisting stress.

Geophysical Journal International↗

USGS2020

Holocene paleoclimate change in the western US: The importance of chronology in discerning patterns and drivers

Sediment in lakes and meadows forms a powerful archive that can be used to reconstruct environmental change through time. Reconstructions of lake level, of chemical, biological, and hydrological conditions, and of surrounding vegetation provide detailed information about past climate conditions, both locally and regionally. Indeed, most of our current knowledge of centennial- to millennial-scale climate variability in the arid western United States, where information about past hydroclimate is particularly important, comes from such sediment-based reconstructions. The pressing need for robust, precise predictions of future conditions is a significant motivation for paleoclimate science, and current research questions frequently require Holocene reconstructions to be resolved at sub-centennial timescales. Increasingly, regional syntheses seek to identify synoptic-scale patterns similar to those defined from modern observations (seasonal, interannual, multi-decadal, etc.) or to compare with the output of climate model simulations. However, the age control on existing records, especially those more than about 20 years old, is often sufficient only for millennial-scale interpretation. Here we assess the age control for 84 published and unpublished records from lakes and meadows in the Great Basin, California, and desert southwest, and use Bayesian modeling to evaluate the 95% uncertainty ranges for the 42 best-dated records. In the Late Holocene, about half of the 42 records have <400-year mean uncertainty ranges; however, high-precision age control is especially critical for young records, used to develop an accurate understanding of a proxy’s response to known climate variations. In the Middle Holocene, records vary from 400 to >800-year mean uncertainty and records of the Early Holocene have 600- to >1400-year mean uncertainty ranges. We find that the largest control on modeled uncertainties is dating density, with at least 2 dates/kyr being optimal and suggest obtaining “range-finder” dates at the onset of a study to better predict the total number of dates needed for an adequate age model. Such a density avoids a commonly observed phenomenon of significant peaks in uncertainty arising in gaps between age control points. Analysis of the uncertainties associated with proxy shifts reveal that more than half are >400 years. Although such large uncertainties currently prevent sub-centennial interpretations in most cases, increased dating density, strategic use of limited funds (including budgeting for a 2 date/kyr minimum at the proposal stage), construction of age-depth models with Bayesian methods, and critical evaluation of chronological uncertainty will shed light on past climate variability at finer timescales, enhancing our understanding of global and regional drivers of western U.S. climate.

California, Idaho, Nevada, Oregon, Utah↗

USGS2020

Trends in recent historical and projected climate data for the Colorado River Basin and potential effects on groundwater availability

Understanding recent historical and projected trends in precipitation and temperature in the Colorado River Basin, and estimating what the projected changes in these climate parameters may mean for groundwater resources in the region, is important for water managers and policymakers to sustainably manage water resources in the basin. Historical (1896–2019) precipitation and temperature data for the upper and lower Colorado River Basins were analyzed to better understand recent trends in climate data that may affect groundwater resources in the area. Historical data indicate multidecadal-scale cyclical patterns in precipitation in both the upper and lower basins. Although upper basin precipitation had no statistical trend over the recent historical period, the lower basin had a weak negative trend over this period. Multidecadal-scale cyclical patterns in temperature also are observed in historical climate data in both the upper and lower basins, at least until the early 1970s. Beginning at that time, both the upper and lower basins experienced strong, monotonic positive trends in temperature. Basic principles of hydrology indicate that periods of decreasing precipitation as well as increasing temperature would have a negative effect, that is, reduction in groundwater infiltration and hence, reduced recharge of aquifer systems. Projected climate data from 97 Coupled Model Intercomparison Project phase 5 (CMIP5) ensemble members across the full range of Representative Concentration Pathway (RCPs) from water years 1951 through 2099 were evaluated to understand what current global climate models are projecting about future conditions in the Colorado River Basin, and what this might mean for groundwater systems in the region. Precipitation in the upper basin is projected to increase throughout the rest of the century, rising to 6 percent above the 1951–2015 historical period by mid-century and to 9 percent above the historical period by the end of the century. Temperature in the upper basin also is projected to be above the recent historical median throughout the rest of the century, with steady warming in decadal average temperatures expected until the last quarter of this century. In contrast to projected precipitation in the upper basin, precipitation in the lower basin is projected to be the same as, or slightly less than, the historical period throughout most of the rest of this century. Like projected temperature in the upper basin, temperature in the lower basin also is projected to be above the recent historical median throughout the rest of the century. Comparing median projections for all future decades with median results from all historical decades, future precipitation is expected to be greater than that of the past in the upper basin, though no significant difference is projected for precipitation in the lower basin. Significant increases (p-value<0.05) are expected in temperature in both the upper and lower basins. To estimate the effects of projected precipitation and temperature on groundwater systems in the region, results from the 97 member CMIP5 climate projection ensemble were used as input in a Soil-Water Balance (SWB) groundwater infiltration model for the Colorado River Basin. SWB simulation results indicate that the upper Colorado River Basin is expected to experience decades of above-historical-average groundwater infiltration through the end of the century. For the lower Colorado River Basin, simulated groundwater infiltration is projected to be consistently less than the recent (1951–2015) historical period for most of the remaining century. A comparison of the distribution of all median simulated groundwater infiltration results between recent historical and future periods indicates projected groundwater infiltration in the upper basin is significantly (p-value<0.05) greater over the combined 2020–2099 future period than the recent (1951–2015) historical period. Moreover, in 41 of 71 (58 percent) possible future decades in this century, groundwater infiltration is projected to be greater than the 75th percentile of historical simulated groundwater infiltration. Projected groundwater infiltration in the lower Colorado River Basin across all future decades is significantly less than in the historical period. Of the 71 future decades in the century, projected groundwater infiltration in the lower basin is expected to be less than the 25th percentile of historical infiltration in 55 (77 percent) of the 10-year periods. Important differences in projected precipitation between the upper (increasing precipitation) and lower (decreasing precipitation) basins largely drive the different responses of simulated groundwater infiltration in the upper (increasing infiltration) and lower (decreasing infiltration) basins. It will be useful to revisit projections in groundwater infiltration in the Colorado River Basin when more up-to-date projections of precipitation become available from the next Coupled Model Intercomparison Project phases or by using climate input developments through Regional Climate Modeling efforts and stochastic weather generators.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2014

Accounting for imperfect detection and survey bias in statistical analysis of presence-only data

Aim During the past decade ecologists have attempted to estimate the parameters of species distribution models by combining locations of species presence observed in opportunistic surveys with spatially referenced covariates of occurrence. Several statistical models have been proposed for the analysis of presence-only data, but these models have largely ignored the effects of imperfect detection and survey bias. In this paper I describe a model-based approach for the analysis of presence-only data that accounts for errors in the detection of individuals and for biased selection of survey locations. Innovation I develop a hierarchical, statistical model that allows presence-only data to be analysed in conjunction with data acquired independently in planned surveys. One component of the model specifies the spatial distribution of individuals within a bounded, geographic region as a realization of a spatial point process. A second component of the model specifies two kinds of observations, the detection of individuals encountered during opportunistic surveys and the detection of individuals encountered during planned surveys. Main conclusions Using mathematical proof and simulation-based comparisons, I demonstrate that biases induced by errors in detection or biased selection of survey locations can be reduced or eliminated by using the hierarchical model to analyse presence-only data in conjunction with counts observed in planned surveys. I show that a relatively small number of high-quality data (from planned surveys) can be used to leverage the information in presence-only observations, which usually have broad spatial coverage but may not be informative of both occurrence and detectability of individuals. Because a variety of sampling protocols can be used in planned surveys, this approach to the analysis of presence-only data is widely applicable. In addition, since the point-process model is formulated at the level of an individual, it can be extended to account for biological interactions between individuals and temporal changes in their spatial distributions.

Global Ecology and Biogeography↗

USGS2020

Evaluation of Arctic warming in mid-Pliocene climate simulations

Palaeoclimate simulations improve our understanding of the climate, inform us about the performance of climate models in a different climate scenario, and help to identify robust features of the climate system. Here, we analyse Arctic warming in an ensemble of 16 simulations of the mid-Pliocene Warm Period (mPWP), derived from the Pliocene Model Intercomparison Project Phase 2 (PlioMIP2). The PlioMIP2 ensemble simulates Arctic (60–90 ∘ N) annual mean surface air temperature (SAT) increases of 3.7 to 11.6 ∘ C compared to the pre-industrial period, with a multi-model mean (MMM) increase of 7.2 ∘ C. The Arctic warming amplification ratio relative to global SAT anomalies in the ensemble ranges from 1.8 to 3.1 (MMM is 2.3). Sea ice extent anomalies range from −3.0 to - 10.4 × 10 6 "> − 10.4 × 10 6 km 2 , with a MMM anomaly of - 5.6 × 10 6 "> − 5.6 × 10 6 km 2 , which constitutes a decrease of 53 % compared to the pre-industrial period. The majority (11 out of 16) of models simulate summer sea-ice-free conditions ( ≤ 1 × 10 6 "> ≤ 1 × 10 6 km 2 ) in their mPWP simulation. The ensemble tends to underestimate SAT in the Arctic when compared to available reconstructions, although the degree of underestimation varies strongly between the simulations. The simulations with the highest Arctic SAT anomalies tend to match the proxy dataset in its current form better. The ensemble shows some agreement with reconstructions of sea ice, particularly with regard to seasonal sea ice. Large uncertainties limit the confidence that can be placed in the findings and the compatibility of the different proxy datasets. We show that while reducing uncertainties in the reconstructions could decrease the SAT data–model discord substantially, further improvements are likely to be found in enhanced boundary conditions or model physics. Lastly, we compare the Arctic warming in the mPWP to projections of future Arctic warming and find that the PlioMIP2 ensemble simulates greater Arctic amplification than CMIP5 future climate simulations and an increase instead of a decrease in Atlantic Meridional Overturning Circulation (AMOC) strength compared to pre-industrial period. The results highlight the importance of slow feedbacks in equilibrium climate simulations, and that caution must be taken when using simulations of the mPWP as an analogue for future climate change.

Climate of the Past↗

USGS2010

Secular variation in economic geology

The temporal pattern of ore deposits on a constantly evolving Earth reflects the complex interplay between the evolving global tectonic regime, episodic mantle plume events, overall changes in global heat flow, atmospheric and oceanic redox states, and even singular impact and glaciation events. Within this framework, a particular ore deposit type will tend to have a time-bound nature. In other words, there are times in Earth history when particular deposit types are absent, times when these deposits are present but scarce, times when they are abundant, and still other times for which we lack sufficient data. Understanding of such secular variation provides a critical first-order tool for exploration targeting, because rocks that have formed or were deformed during a certain time slice may be very permissive for a given deposit type, whereas identification of rocks of less favorable ages would help eliminate large areas during exploration programs. Secular analysis, therefore, is potentially a powerful tool for mineral resource assessment in poorly known terranes, providing a quick filter for favorability of a given deposit type using age of host rocks. Factors bearing on the known age distribution of a particular type of deposit include the following: (1) uneven preservation, (2) data gaps, (3) contingencies of plate motions, and (4) long-term secular changes in the Earth System. The present special issue of Economic Geology is focused on the latter factor, although all of these are interrelated. The selective preservation of certain mineral deposit types and the greater susceptibility for shallowly formed ores in tectonically active environments to be lost to erosion define a pattern that is superimposed on the secular formational trends (e.g., Groves et al., 2005a , b ; Kerrich et al., 2005 ). With improved geochronological methods and the availability of information on important mineral deposits from most parts of the world, data gaps for defining broad temporal distributions of ore types are becoming smaller. It has been increasingly recognized that ore deposit formation is also correlated with plate tectonic setting. Nevertheless, a complex Earth history of supercontinent assembly and breakup has led to the fragmentation of many Paleozoic and Precambrian mineral provinces. The use of plate reconstructions in economic geology, although extremely controversial and conjectural before the late Paleozoic, is critical for defining these provinces prior to the added complications resulting from post-ore plate motions. It is now well established that the temporal patterns of many types of mineral deposits (Fig. 1 1 ) reflect the formation or break-up of supercontinents and the preservation potential of deposits formed during these periods ( Barley and Groves, 1992 ; Titley, 1993 ; Kerrich et al., 2005 ; Goldfarb et al., 2009 ). Approximate time periods for such formation and break-up, respectively, include 2800–2500 and 2450–2100 Ma for Kenorland, 2100–1800 and 1600–1300 Ma for Nuna/Columbia, 1300–1100 and 850–600 Ma for Rodinia, and 600–300 Ma and 200–60 Ma for Gondwanaland-Pangea. A new supercontinent, Amasia, has begun to form during the past 250 m.y., thus overlapping Pangea break-up. Many of the formation-preservation patterns are themselves controlled by progressive cooling of Earth, the change from a mantle-plume buoyancy style to subduction-dominated tectonics, a decreasing buoyancy of the subcontinental lithospheric mantle, and depth of ore formation. In general, orogenic Au, volcanogenic massive sulfide (VMS), epithermal Au-Ag, and porphyry Cu±Au and Mo porphyry deposits form in active margins during periods of supercontinent assembly. Numerous other ore deposit types show an association with supercontinent formation, but develop inland of the active margin. These include many of the MVT Pb-Zn deposits and unconformity-type U deposits. The Tertiary Carlin-type deposits within the deformed shelf sequences along the North American craton margin also appear to have formed during the ongoing growth of Amasia. Those ores associated with periods of supercontinent breakup or attempted breakup are more difficult to define. They probably include diamond, Bushveld-type Ni-Cu-PGE, IOCG, and clastic-dominated Pb-Zn (or SEDEX) deposits in intracontinental areas of failed rifting, and other clastic-dominated Pb-Zn deposits in areas of actual breakup. In all cases, however, these temporal/spatial distributions are ultimately controlled by the secular character of Earth history.

Economic Geology↗

USGS2006

Geohydrological characterization, water-chemistry, and ground-water flow simulation model of the Sonoma Valley area, Sonoma County, California

The Sonoma Valley, located about 30 miles north of San Francisco, is one of several basins in Sonoma County that use a combination of ground water and water delivered from the Russian River for supply. Over the past 30 years, Sonoma Valley has experienced rapid population growth and land-use changes. In particular, there has been a significant increase in irrigated agriculture, predominantly vineyards. To provide a better understanding of the ground-water/surface-water system in Sonoma Valley, the U.S. Geological Survey compiled and evaluated existing data, collected and analyzed new data, and developed a ground-water flow model to better understand and manage the ground-water system. The new data collected include subsurface lithology, gravity measurements, groundwater levels, streamflow gains and losses, temperature, water chemistry, and stable isotopes. Sonoma Valley is drained by Sonoma Creek, which discharges into San Pablo Bay. The long-term average annual volume of precipitation in the watershed is estimated to be 269,000 acre-feet. Recharge to the ground-water system is primarily from direct precipitation and Sonoma Creek. Discharge from the ground-water system is predominantly outflow to Sonoma Creek, pumpage, and outflow to marshlands and to San Pablo Bay. Geologic units of most importance for groundwater supply are the Quaternary alluvial deposits, the Glen Ellen Formation, the Huichica Formation, and the Sonoma Volcanics. In this report, the ground-water system is divided into three depth-based geohydrologic units: upper (less than 200 feet below land surface), middle (between 200 and 500 feet), and lower (greater than 500 feet). Synoptic streamflow measurements were made along Sonoma Creek and indicate those reaches with statistically significant gains or losses. Changes in ground-water levels in wells were analyzed by comparing historical contour maps with the contour map for 2003. In addition, individual hydrographs were evaluated to assess temporal changes by region. In recent years, pumping depressions have developed southeast of Sonoma and southwest of El Verano. Water-chemistry data for samples collected from 75 wells during 2002-04 indicate that the ground-water quality in the study area generally is acceptable for potable use. The water from some wells, however, contains one or more constituents in excess of the recommended standards for drinking water. The chemical composition of water from creeks, springs, and wells sampled for major ions plot within three groups on a trilinear diagram: mixed-bicarbonate, sodium-mixed anion, and sodium-bicarbonate. An area of saline ground water in the southern part of the Sonoma Valley appears to have shifted since the late 1940s and early 1950s, expanding in one area, but receding in another. Sparse temperature data from wells southwest of the known occurrence of thermal water suggest that thermal water may be present beneath a larger part of the valley than previously thought. Thermal water contains higher concentrations of dissolved minerals than nonthermal waters because mineral solubilities generally increase with temperature. Geohydrologic Characterization, Water-Chemistry, and Ground-Water Flow Simulation Model of the Sonoma Valley Area, Sonoma County, California Oxygen-18 (d18 O) and deuterium (dD) values for water from most wells plot along the global meteoric water line, indicating that recharge primarily is derived from the direct infiltration of precipitation or the infiltration of seepage from creeks. Samples from shallow- and intermediate-depth wells located near Sonoma Creek and (or) in the vicinity of Shellville plot to the right of the global meteoric water line, indicating that these waters are partly evaporated. The d18 O and dD composition of water from sampled wells indicates that water from wells deeper than 200 feet is isotopically lighter (more negative) than water from wells less than 200 feet deep, possibly indicating that older ground wate

California↗