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USGS2016

Off-road vehicles affect nesting behaviour and reproductive success of American Oystercatchers Haematopus palliatus

As human populations and associated development increase, interactions between humans and wildlife are occurring with greater frequency. The effects of these interactions, particularly on species whose populations are declining, are of great interest to ecologists, conservationists, land managers and natural resource policy-makers. The American Oystercatcher Haematopus palliatus , a species of conservation concern in the USA, nests on coastal beaches subject to various forms of anthropogenic disturbance, including aircraft overflights, off-road vehicles and pedestrians. This study assessed the effects of these human disturbances on the incubation behaviour and reproductive success of nesting American Oystercatchers at Cape Lookout National Seashore, on the Atlantic coast of the USA. We expanded on-going monitoring of Oystercatchers at Cape Lookout National Seashore by supplementing periodic visual observations with continuous 24-h video and audio recording at nests. Aircraft overflights were not associated with changes in Oystercatcher incubation behaviour, and we found no evidence that aircraft overflights influenced Oystercatcher reproductive success. However, Oystercatchers were on their nests significantly less often during off-road vehicle and pedestrian events than they were during control periods before the events, and an increase in the number of off-road vehicles passing a nest during incubation was consistently associated with significant reductions in daily nest survival (6% decrease in daily nest survival for a one-vehicle increase in the average number of vehicles passing a nest each day; odds ratio = 0.94; 95% confidence interval (CI) 0.90, 0.98) and hatching success (12% decrease in hatching success for a one-vehicle increase in the average number of vehicles passing a nest each day; odds ratio = 0.88; 95% CI 0.76, 0.97). Management of vehicles and pedestrians in areas of Oystercatcher breeding is important for the conservation of American Oystercatchers.

International Journal of Avian Science↗

USGS2014

Assessing effects of variation in global climate data sets on spatial predictions from climate envelope models

Climate change poses new challenges for natural resource managers. Predictive modeling of species–environment relationships using climate envelope models can enhance our understanding of climate change effects on biodiversity, assist in assessment of invasion risk by exotic organisms, and inform life-history understanding of individual species. While increasing interest has focused on the role of uncertainty in future conditions on model predictions, models also may be sensitive to the initial conditions on which they are trained. Although climate envelope models are usually trained using data on contemporary climate, we lack systematic comparisons of model performance and predictions across alternative climate data sets available for model training. Here, we seek to fill that gap by comparing variability in predictions between two contemporary climate data sets to variability in spatial predictions among three alternative projections of future climate. Overall, correlations between monthly temperature and precipitation variables were very high for both contemporary and future data. Model performance varied across algorithms, but not between two alternative contemporary climate data sets. Spatial predictions varied more among alternative general-circulation models describing future climate conditions than between contemporary climate data sets. However, we did find that climate envelope models with low Cohen's kappa scores made more discrepant spatial predictions between climate data sets for the contemporary period than did models with high Cohen's kappa scores. We suggest conservation planners evaluate multiple performance metrics and be aware of the importance of differences in initial conditions for spatial predictions from climate envelope models.

Journal of Fish and Wildlife Management↗

USGS2020

Feeding ecology of age-0 gar at Lake Texoma inferred from analysis of stable isotopes

Conservation and restoration of gar (Lepisosteidae) populations in North America are increasingly of interest to fisheries managers. Alligator Gar Atractosteus spatula are being stocked as age-0 fish in efforts to re-establish extirpated populations. However, gars are known to be highly cannibalistic in hatcheries, suggesting that age-0 Alligator Gar introduced into natural habitats may face predation pressures from other gar species, limiting the likelihood of released fish recruiting to the population. Furthermore, introduced age-0 gar may not have the proper prey resources for rapid growth that would facilitate recruitment to adulthood. Texoma Reservoir, located on the Oklahoma–Texas border, hosts four native gar species, including the Alligator Gar, whose population is supported by supplemental stocking of age-0 fingerlings. We investigated feeding by age-0 gar to obtain a baseline level of trophic ecology for this group of fishes, including the potential for poststocking cannibalism. Food webs were reconstructed via analysis of carbon (δ 13 C) and nitrogen (δ 15 N) isotopes using Bayesian mixing model approaches. Isotopic values for age-0 fish of all four gar species were similar. Invertebrates represented a large fraction of the diet for all gars, followed by Common Carp Cyprinus carpio and Grass Carp Ctenopharyngodon idella . Competitive interactions among Bluegill Lepomis macrochirus , White Bass Morone chrysops , White Crappie Pomoxis annularis , and young gar may occur for invertebrates, shads Dorosoma spp., and Western Mosquitofish Gambusia affinis but are likely short-lived due to the rapid growth of age-0 gar after their transition to piscivory. Trophic position of age-0 Alligator Gar, Longnose Gar Lepisosteus osseus , and Spotted Gar Lepisosteus oculatus was positively related to TL, but this relationship was not observed for Shortnose Gar Lepisosteus platostomus . In Texoma Reservoir, the four native gar species, including stocked Alligator Gar, appear to have adequate food resources for recruitment, with little indication of within-family or interspecific predation. This suggests that stocked Alligator Gar quickly acclimated to their new environment.

North American Journal of Fisheries Management↗

USGS2014

Reconnaissance of pharmaceuticals and wastewater indicators in streambed sediments of the lower Columbia River basin, Oregon and Washington

One by-product of advances in modern chemistry is the accumulation of synthetic chemicals in the natural environment. These compounds include contaminants of emerging concern (CECs), some of which are endocrine disrupting compounds (EDCs) that can have detrimental reproductive effects. The role of sediments in accumulating these types of chemicals and acting as a source of exposure for aquatic organisms is not well understood. Here we present a small-scale reconnaissance of CECs in bed sediments of the lower Columbia River and several tributaries and urban streams. Surficial bed sediment samples were collected from the Columbia River, the Willamette River, the Tualatin River, and several small urban creeks in Oregon. Thirty-nine compounds were detected at concentrations ranging from <1 to >1,000 ng [g sediment] -1 dry weight basis. Columbia River mainstem, suggesting a higher risk of exposure to aquatic life in lower order streams. Ten known or suspected EDCs were detected during the study. At least one EDC was detected at 21 of 23 sites sampled; several EDCs were detected in sediment from most sites. This study is the first to document the occurrence of a large suite of CECs in the sediments of the Columbia River basin. A better understanding of the role of sediment in the fate and effects of emerging contaminants is needed.

Oregon;Washington↗

USGS2016

Comparison of methods to monitor the distribution and impacts of unauthorized travel routes in a border park

The distribution and abundance of human-caused disturbances vary greatly through space and time and are cause for concern among land stewards in natural areas of the southwestern border-lands between the USA and Mexico. Human migration and border protection along the international boundary create Unauthorized Trail and Road (UTR) networks across National Park Service lands and other natural areas. UTRs may cause soil erosion and compaction, damage to vegetation and cultural resources, and may stress wildlife or impede their movements. We quantify the density and severity of UTR disturbances in relation to soils, and compare the use of previously established targeted trail assessments (hereafter — targeted assessments) against randomly placed transects to detect trail densities at Coronado National Memorial in Arizona in 2011. While trail distributions were similar between methods, targeted assessments estimated a large portion of the park to have the lowest density category (0–5 trail encounters per/km 2 ), whereas the random transects in 2011 estimated more of the park as having the higher density categories (e.g., 15–20 encounters per km 2 category). Soil vulnerability categories that were assigned, a priori, based on published soil texture and composition did not accurately predict the impact of UTRs on soil, indicating that empirical methods may be better suited for identifying severity of compaction. While the estimates of UTR encounter frequencies were greater using the random transects than the targeted assessments for a relatively short period of time, it is difficult to determine whether this difference is dependent on greater cross-border activity, differences in technique, or from confounding environmental factors. Future surveys using standardized sampling techniques would increase accuracy.

Arizona↗

USGS2005

Hydrologic properties of coal beds in the Powder River Basin, Montana I. Geophysical log analysis

As part of a multidisciplinary investigation designed to assess the implications of coal-bed methane development on water resources for the Powder River Basin of southeastern Montana, six wells were drilled through Paleocene-age coal bedsalong a 31-km east–west transect within the Tongue River drainage basin. Analysis of geophysical logs obtained in these wells provides insight into the hydrostratigraphic characteristics of the coal and interbedded siliciclastic rocks and their possible interaction with the local stress field. Natural gamma and electrical resistivity logs were effective in distinguishing individual coal beds. Full-waveform sonic logs were used to determine elastic properties of the coal and an attendant estimate of aquifer storage is in reasonable agreement with that computed from a pumping test. Inspection of magnetically oriented images of the borehole walls generated from both acoustic and optical televiewers and comparison with coal cores infer a face cleat orientation of approximately N33°E, in close agreement with regional lineament patterns and the northeast trend of the nearby Tongue River. The local tectonic stress field in this physiographic province as inferred from a nearby 1984 earthquake denotes an oblique strike-slip faulting regime with dominant east–west compression and north–south extension. These stress directions are coincident with those of the primary fracture sets identified from the televiewer logs and also with the principle axes of the drawdown ellipse produced from a complementary aquifer test, but oblique to apparent cleat orientation. Consequently, examination of these geophysical logs within the context of local hydrologic characteristics indicates that transverse transmissivity anisotropy in these coals is predominantly controlled by bedding configuration and perhaps a mechanical response to the contemporary stress field rather than solely by cleat structure.

Montana↗

USGS2024

Applying local and global sensitivity analysis to inform bigheaded carp management

Natural resource managers commonly use population-level models to aid in understanding the status of target populations or the potential implications of management actions. Sensitivity analyses, specifically, local sensitivity analysis (LSA) and global sensitivity analysis (GSA), exist as tools to improve understanding of these models, the importance of specific parameters to model outcomes, and the assumptions inherent to population models. However, applied ecology and closely related fields such as fisheries and wildlife management rarely use LSA or GSA. Here, we apply LSA and GSA to the Spatially Explicit Invasive Carp Population model, a population-level model used to simulate and compare management actions on the invasive silver carp Hypophthalmichthys molitrix population in the Illinois River. The spatial structure within the model arises from the navigation “pools” that exist between navigation lock-and-dam in the river and are also the focus of fisheries management in the river. We completed LSA and GSA for two reasons: (1) to compare the importance of model input parameters on simulated model populations and (2) to demonstrate the use of LSA and GSA for population-level models. In our system, the most important sensitivity values generally were detected in Alton Pool. This pool is the farthest downstream and includes a direct connection with the Mississippi River. These results indicate that the population dynamics in Alton Pool are an important driver of the population dynamics throughout the Illinois River. Management outcomes in this system will, therefore, be strongly dependent on the dynamics of Alton Pool.

Illinois↗

USGS2010

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

Data Series↗

USGS2004

Constraining the inferred paleohydrologic evolution of a deep unsaturated zone in the Amargosa Desert

Natural flow regimes in deep unsaturated zones of arid interfluvial environments are rarely in hydraulic equilibrium with near-surface boundary conditions imposed by present-day plant–soil–atmosphere dynamics. Nevertheless, assessments of water resources and contaminant transport require realistic estimates of gas, water, and solute fluxes under past, present, and projected conditions. Multimillennial transients that are captured in current hydraulic, chemical, and isotopic profiles can be interpreted to constrain alternative scenarios of paleohydrologic evolution following climatic and vegetational shifts from pluvial to arid conditions. However, interpreting profile data with numerical models presents formidable challenges in that boundary conditions must be prescribed throughout the entire Holocene, when we have at most a few decades of actual records. Models of profile development at the Amargosa Desert Research Site include substantial uncertainties from imperfectly known initial and boundary conditions when simulating flow and solute transport over millennial timescales. We show how multiple types of profile data, including matric potentials and porewater concentrations of Cl − , δD, δ 18 O, can be used in multiphase heat, flow, and transport models to expose and reduce uncertainty in paleohydrologic reconstructions. Results indicate that a dramatic shift in the near-surface water balance occurred approximately 16000 yr ago, but that transitions in precipitation, temperature, and vegetation were not necessarily synchronous. The timing of the hydraulic transition imparts the largest uncertainty to model-predicted contemporary fluxes. In contrast, the uncertainties associated with initial (late Pleistocene) conditions and boundary conditions during the Holocene impart only small uncertainties to model-predicted contemporaneous fluxes.

California, Nevada↗

USGS2021

Is there enough water? How bearish and bullish outlooks are linked to decision-maker perspectives on environmental flows

Policies that mandate environmental flows (e-flows) can be powerful tools for freshwater conservation, but implementation of these policies faces many hurdles. To better understand these challenges, we explored two key questions: (1) What additional data are needed to implement e-flows? and (2) What are the major socio-political barriers to implementing e-flows? We surveyed water and natural resource decision makers in the semi-arid Red River basin, Texas-Oklahoma, USA, and used social network analysis to analyze their communication patterns. Most respondents agreed that e-flows can provide important benefits and identified the same data needs. However, respondents sharply in their beliefs on other issues, and a clustering analysis revealed two distinct groups of decision makers. One cluster of decision makers tended to be bearish, or pessimistic, and believed that: current flow conditions are not adequate, there are many serious socio-political barriers to implementation, water conflicts will likely increase in the future, and climate change is likely to exacerbate these issues. The other cluster of respondents was bullish, or optimistic: they foresaw fewer future water conflicts and fewer socio-political barriers to implementation. Despite these differences, both clusters largely identified the same data needs and barriers to e-flows implementation. Our social network analysis revealed that the frequency of communication between clusters was not significantly different than the frequency of communication within clusters. Overall, our results suggest that the different perspectives of decision-makers could complicate efforts to implement e-flows and proactively plan for climate change. However, there are opportunities for collaboration on addressing common data needs and barriers to implementation. Overall, our study provides a key socio-environmental perspective on e-flows implementation from a semi-arid and socio-politically complex river basin and contextualizes the many challenges facing e-flows implementation in river basins globally.

Journal of Environmental Management↗

USGS2005

Groundwater recharge and sustainability in the High Plains aquifer in Kansas, USA

Sustainable use of groundwater must ensure not only that the future resource is not threatened by overuse, but also that natural environments that depend on the resource, such as stream baseflows, riparian vegetation, aquatic ecosystems, and wetlands are protected. To properly manage groundwater resources, accurate information about the inputs (recharge) and outputs (pumpage and natural discharge) within each groundwater basin is needed so that the long-term behavior of the aquifer and its sustainable yield can be estimated or reassessed. As a first step towards this effort, this work highlights some key groundwater recharge studies in the Kansas High Plains at different scales, such as regional soil-water budget and groundwater modeling studies, county-scale groundwater recharge studies, as well as field-experimental local studies, including some original new findings, with an emphasis on assumptions and limitations as well as on environmental factors affecting recharge processes. The general impact of irrigation and cultivation on recharge is to appreciably increase the amount of recharge, and in many cases to exceed precipitation as the predominant source of recharge. The imbalance between the water input (recharge) to the High Plains aquifer and the output (pumpage and stream baseflows primarily) is shown to be severe, and responses to stabilize the system by reducing water use, increasing irrigation efficiency, adopting water-saving land-use practices, and other measures are outlined. Finally, the basic steps necessary to move towards sustainable use of groundwater in the High Plains are delineated, such as improving the knowledge base, reporting and providing access to information, furthering public education, as well as promoting better understanding of the public's attitudinal motivations; adopting the ecosystem and adaptive management approaches to managing groundwater; further improving water efficiency; exploiting the full potential of dryland and biosaline agriculture; and adopting a goal of long-term sustainable use. ?? Springer-Verlag 2005.

Hydrogeology Journal↗

USGS1998

Influence of an igneous intrusion on the inorganic geochemistry of a bituminous coal from Pitkin County, Colorado

Although the effects of igneous dikes on the organic matter in coal have been observed at many localities there is virtually no information on the effects of the intrusions of the inorganic constituents in the coal. Such a study may help to elucidate the behavior of trace elements during in situ gasification of coal and may provide insights into the resources potential for coal and coke affected by the intrusion. To determine the effects of an igneous intrusion on the inorganic chemistry of a coal we used a series of 11 samples of coal and natural coke that had been collected at intervals from 3 to 106 cm from a dike that intruded the bituminous Dutch Creek coal in Pitkin, CO. The samples were chemically analyzed for 66 elements. SEM-EDX and X-ray diffraction analysis were performed on selected samples. Volatile elements such as F, Cl, Hg, and Se are not depleted in the samples (coke and coal) nearest the dike that were exposed to the highest temperatures. Their presence in these samples is likely due to secondary enrichment following volatilization of the elements inherent in the coal. Equilibration with ground water may account for the uniform distribution of Na, B, and Cl. High concentrations of Ca, Mg, Fe, Mn, Sr, and CO2 in the coke region are attributed to the reaction of CO and CO2 generated during the coking of the coal with fluids from the intrusion, resulting in the precipitation of carbonates. Similarly, precipitation of sulfide minerals in the coke zone may account for the relatively high concentrations of Ag, Hg, Cu, Zn, and Fe. Most elements are concentrated at the juncture of the fluidized coke and the thermally metamorphosed coal. Many of the elements enriched in this region (for example, Ga, Ge, Mo, Rb, U, La, Ce, Al, K, and Si) may have been adsorbed on either the clays or the organic matter or on both.Although the effects of igneous dikes on the organic matter in coal have been observed at many localities there is virtually no information on the effects of the intrusions on the inorganic constituents in the coal. Such a study may help to elucidate the behavior of trace elements during in situ gasification of coal and may provide insights into the resource potential of coal and coke affected by the intrusion. To determine the effects of an igneous intrusion on the inorganic chemistry of a coal we used a series of 11 samples of coal and natural coke that had been collected at intervals from 3 to 106 cm from a dike that intruded the bituminous Dutch Creek coal in Pitkin, CO. The samples were chemically analyzed for 66 elements. SEM-EDX and X-ray diffraction analysis were performed on selected samples. Volatile elements such as F, Cl, Hg, and Se are not depleted in the samples (coke and coal) nearest the dike that were exposed to the highest temperatures. Their presence in these samples is likely due to secondary enrichment following volatilization of the elements inherent in the coal. Equilibration with ground water may account for the uniform distribution of Na, B, and Cl. High concentrations of Ca, Mg, Fe, Mn, Sr, and CO2 in the coke region are attributed to the reaction of CO and CO2 generated during the coking of the coal with fluids from the intrusion, resulting in the precipitation of carbonates. Similarly, precipitation of sulfide minerals in the coke zone may account for the relatively high concentrations of Ag, Hg, Cu, Zn, and Fe. Most elements are concentrated at the juncture of the fluidized coke and the thermally metamorphosed coal. Many of the elements enriched in this region (for example, Ga, Ge, Mo, Rb, U, La, Ce, Al, K, and Si) may have been adsorbed on either the clays or the organic matter or on both.

International Journal of Coal Geology↗

USGS1987

Instream water use in the United States: water laws and methods for determining flow requirements

Water use generally is divided into two primary classes - offstream use and instream use. In offstream use, sometimes called out-of-stream or diversionary use, water is withdrawn (diverted) from a stream or aquifer and transported to the place of use. Examples are irrigated agriculture, municipal water supply, and industrial use. Each of these offstream uses, which decreases the volume of water available downstream from the point of diversion, is discussed in previous articles in this volume. Instream use, which generally does not diminish the flow downstream from its point of use, and its importance are described in this article. One of the earliest instream uses of water in the United States was to turn the water wheels that powered much of the Nation's industry in the 18th and 19th centuries. Although a small volume of water might have been diverted to a mill near streamside, that water usually was returned to the stream near the point of diversion and, thus, the flow was not diminished downstream from the mill. Over time, the generation of hydroelectric power replaced mill wheels as a means of converting water flow into energy. Since the 1920's, the generation of hydroelectric power increasingly has become a major instream use of water. By 1985, more than 3 billion acre-feet of water (3,050,000 million gallons per day) was used annually for hydropower generation (Solley and others, 1988, p. 45)-enough water to cover the State of Colorado to a depth of 51 feet. Navigation is another instream use with a long history. The Lewis and Clark expedition journals and many of Mark Twain's novels illustrate the extent to which the Nation originally depended on adequate streamfiows for basic transportation. Navigation in the 1980's is still considered to be an instream use; however, it often is based upon a stream system that has been modified greatly through channelization, diking, and construction of dams and locks. The present (1987) inland water navigation system in the conterminous United States consists of about 12,000 miles of maintained waterways, over which about 500 million tons of cargo is carried each year (U.S. Army Corps of Engineers, 1988, p. 16). Although not so widely practiced in recent years, streams have been used to dispose of raw waste products from homes, communities, and factories. This use has been discouraged by law and public policy because of public health concerns and the damage it causes to the environment. Beginning in the mid-1960's, other instream uses gained new prominence in the water-resources arena-the assertion of a legal right to a free-flowing stream for biological, recreational, and esthetic purposes. These uses themselves, however, are not new. Riverine habitat always has produced fish, and the beauty of flowing water always has evoked a strong sense of esthetic appreciation. What is new is the emerging legitimacy and awareness of these noneconomic uses under State and Federal laws and regulations. In the past, environmental uses of flowing water were ignored, for the most part, under a long-standing legal tradition that favored offstream uses and certain instream uses that had a strong economic basis. The history of instream-flow policy debate really concerns those recently recognized types of interim uses. Although the more transitional water uses have been protected by law, the recognition of other in stream uses has resulted in substantial changes in State water laws. Although methods for determining the volume of water needed for most traditional water uses are relatively straight-forward and well-established, methods for determining water requirements for the in stream uses have been developed only recently and are continuing to evolve. Water laws that have favored the more traditional water uses, the inherent nature of conflict between instream and offstream water uses, and the special kinds of technological and philosophical problems posed by the "newer" types of instream uses are described below. Water laws that have been passed to accommodate the more recently recognized instream uses are summarized.

Report↗

USGS2017

Lizard activity and abundance greater in burned habitat of a xeric montane forest

Restoring the natural or historical state of ecosystems is a common objective among resource managers, but determining whether desired system responses to management actions are occurring is often protracted and challenging. For wildlife, the integration of mechanistic habitat modeling with population monitoring may provide expedited measures of management effectiveness and improve understanding of how management actions succeed or fail to recover populations. Southern Appalachia is a region of high biodiversity that has undergone dramatic change as a result of human activities such as historic logging, exotic invasions, and alteration of disturbance regimes—including reduction in application of fire. Contemporary efforts to restore fire-maintained ecosystems within southern Appalachian forests require tools to assess the effects of fire management practices on individual animal fitness and relate them to corresponding influences on species abundance. Using automated sensing equipment, we investigated the effects of burned forests on reptile habitat suitability within the western portion of Great Smoky Mountains National Park, Tennessee. Specifically, we used microclimate measurements to model northern fence lizard Sceloporus undulatus hyacinthinus diurnal activity budgets in unburned and variable burn age (3–27-y) forest stands. We estimated northern fence lizard occurrence and abundance along transects through burned and unburned forests. Burned forest stands had microclimates that resulted in longer modeled daily activity periods under most conditions during summer. S. undulatus abundance was 4.75 times greater on burned stands compared to paired unburned stands, although the relationship between burn age and abundance was not well determined. Results suggest the more open habitat structure of burned areas within these xeric pine–oak forests may benefit S. undulatus .

Tennesee↗

USGS2016

Influences of summer water temperatures on the movement, distribution, and resources use of fluvial Westslope Cutthroat Trout in the South Fork Clearwater River basin

Although many Westslope Cutthroat Trout Oncorhynchus clarkii lewisi populations in Idaho are robust and stable, population densities in some systems remain below management objectives. In many of those systems, such as in the South Fork Clearwater River (SFCR) system, environmental conditions (e.g., summer temperatures) are hypothesized to limit populations of Westslope Cutthroat Trout. Radiotelemetry and snorkeling methods were used to describe seasonal movement patterns, distribution, and habitat use of Westslope Cutthroat Trout in the SFCR during the summers of 2013 and 2014. Sixty-six radio transmitters were surgically implanted into Westslope Cutthroat Trout (170–405 mm TL) from May 30–June 25, 2013, and June 20–July 6, 2014. Sedentary and mobile summer movement patterns by Westslope Cutthroat Trout were observed in the SFCR. Westslope Cutthroat Trout were generally absent from the lower SFCR. In the upper region of the SFCR, fish generally moved from the main-stem SFCR into tributaries as water temperatures increased during the summer. Fish remained in the middle region of the SFCR where water temperatures were cooler than in the upper or lower regions of the SFCR. A spatially explicit water temperature model indicated that the upper and lower regions of the SFCR exceeded thermal tolerance levels of Westslope Cutthroat Trout throughout the summer. During snorkeling, 23 Westslope Cutthroat Trout were observed in 13 sites along the SFCR and at low density (mean ± SD, 0.0003 ± 0.0001 fish/m 2 ). The distribution of fish observed during snorkeling was consistent with the distribution of radio-tagged fish in the SFCR during the summer. Anthropogenic activities (i.e., grazing, mining, road construction, and timber harvest) in the SFCR basin likely altered the natural flow dynamics and temperature regime and thereby limited stream habitat in the SFCR system for Westslope Cutthroat Trout.

Idaho↗

USGS2012

Use of a seismic air gun to reduce survival of nonnative lake trout embryos: A tool for conservation?

The detrimental impacts of nonnative lake trout Salvelinus namaycush in the western USA have prompted natural resource management agencies in several states to implement lake trout suppression programs. Currently, these programs rely on mechanical removal methods (i.e., gill nets, trap nets, and angling) to capture subadult and adult lake trout. We conducted a study to explore the potential for using high-intensity sound from a relatively small (655.5 cm 3 [40 in 3 ]) seismic air gun to reduce survival of lake trout embryos. Lake trout embryos at multiple stages of development were exposed to a single discharge of the seismic air gun at two depths (5 and 15 m) and at two distances from the air gun (0.1 and 2.7 m). Control groups for each developmental stage, distance, and depth were treated identically except that the air gun was not discharged. Mortality in lake trout embryos treated at 0.1 m from the air gun was 100% at 74 daily temperature units in degrees Celsius (TU°C) at both depths. Median mortality in lake trout embryos treated at 0.1 m from the air gun at 207 TU°C (93%) and 267 °C (78%) appeared to be higher than that of controls (49% and 48%, respectively) at 15-m depth. Among the four lake trout developmental stages, exposure to the air gun at 0.1 m resulted in acute mortality up to 60% greater than that of controls. Mortality at a distance of 2.7 m did not appear to differ from that of controls at any developmental stage or at either depth. Our results indicate that seismic air guns have potential as an alternative tool for controlling nonnative lake trout, but further investigation is warranted.

North American Journal of Fisheries Management↗

USGS2011

Millennial precipitation reconstruction for the Jemez Mountains, New Mexico, reveals changing drought signal

Drought is a recurring phenomenon in the American Southwest. Since the frequency and severity of hydrologic droughts and other hydroclimatic events are of critical importance to the ecology and rapidly growing human population of this region, knowledge of long-term natural hydroclimatic variability is valuable for resource managers and policy-makers. An October–June precipitation reconstruction for the period AD 824–2007 was developed from multi-century tree-ring records of Pseudotsuga menziesii (Douglas-fir), Pinus strobiformis (Southwestern white pine) and Pinus ponderosa (Ponderosa pine) for the Jemez Mountains in Northern New Mexico. Calibration and verification statistics for the period 1896–2007 show a high level of skill, and account for a significant portion of the observed variance (>50%) irrespective of which period is used to develop or verify the regression model. Split-sample validation supports our use of a reconstruction model based on the full period of reliable observational data (1896–2007). A recent segment of the reconstruction (2000–2006) emerges as the driest 7-year period sensed by the trees in the entire record. That this period was only moderately dry in precipitation anomaly likely indicates accentuated stress from other factors, such as warmer temperatures. Correlation field maps of actual and reconstructed October–June total precipitation, sea surface temperatures and 500-mb geopotential heights show characteristics that are similar to those indicative of El Niño–Southern Oscillation patterns, particularly with regard to ocean and atmospheric conditions in the equatorial and north Pacific. Our 1184-year reconstruction of hydroclimatic variability provides long-term perspective on current and 20th century wet and dry events in Northern New Mexico, is useful to guide expectations of future variability, aids sustainable water management, provides scenarios for drought planning and as inputs for hydrologic models under a broader range of conditions than those provided by historical climate records.

New Mexico↗

USGS2006

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI’s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI’s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists’ League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program’s development and success. The value of ARMI’s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI’s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI’s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗