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Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—A synthesis of science, 2005 to 2012

This report is intended to synthesize the state of the scientific understanding of pallid sturgeon ecological requirements to provide recommendations for future science directions and context for Missouri River restoration and management decisions. Recruitment of pallid sturgeon has been low to non-existent throughout its range. Emerging understanding of the genetic structure of pallid sturgeon populations sets a broad framework for species and river management decisions, including decisions about managing the future genetic diversity of the species, but also decisions about where and what type of river restoration actions will be effective for subpopulations of this highly migratory species. Adult pallid sturgeon may migrate hundreds of kilometers (km) to spawn and their progeny may disperse even greater distances downstream as drifting free embryos. As a result of their complex life history pallid sturgeon naturally exploit a wide range of habitats during their life cycles. The construction of dams and reservoirs has fragmented habitats and may have shifted Missouri River subpopulations downstream. Research has not identified one primary biological or ecological constraint that appears to limit populations of the pallid sturgeon. With the present (2013) state of knowledge many life stages and life-stage transitions cannot be ruled out as contributing to recruitment failure. Biological opinions in 2000 (and amended in 2003) presented the dominant hypotheses for recruitment failure that existed at that time. Emphasis was on the role of the flow regime, specifically spring flow pulses (“spring rises”), to condition spawning substrate and cue reproductive aggregations and migrations, and on low flows and additional slow, shallow-water area to serve as rearing habitat for age-0 to juvenile pallid sturgeon. Studies on spawning habitat dynamics have documented that habitat patches selected for spawning by fish in the Lower Missouri River (Missouri River downstream from Gavins Point Dam to the confluence with the Mississippi River) are dominantly on outside, revetted bends in the deepest, fastest, and most turbulent water. Studies in more natural habitat on the Yellowstone River have documented spawning in convergent flow in the middle of the channel on discrete patches of gravel within a sand-dominated channel, an arrangement that may be more effective in attracting aggregations of reproductive fish compared to the nearly continuous revetment on the Lower Missouri River. Pallid sturgeon spawn in the spring and early summer during periods of increasing day length. Water temperature consistently exerts a threshold effect for spawning at 16–18 °C. In addition, the role of water temperature is indicated by pauses and reversals in upstream migrations that have been associated with cold weather fronts that create a transient decrease in water temperature. From 2005 to 2012 on the Lower Missouri River, no obvious relations between flow pulses and fish movements and spawning behaviors have been apparent. However, pallid sturgeon tracking at the Upper Missouri–Yellowstone confluence indicates that in most years, most telemetered pallid sturgeon migrate out of the Missouri River and into the Yellowstone River in the June–July timeframe in association with the spring pulse. This pattern was disrupted in 2011 when a high flow pulse with warm temperatures and high turbidity emanated from the Milk River, followed by record releases from Fort Peck Dam, and 36–39 percent of the telemetered population migrated up the Upper Missouri. This result supports the hypothesis that sufficiently large flow pulses may trigger migration and aggregation but it is not clear that functional pulses are within reservoir management authorities. Notably, a pallid sturgeon free embryo was captured on the Upper Missouri River in 2011 and another single, genetically confirmed embryo was captured on the Yellowstone River in 2012. Research on free-embryo drift has indicated the potential for hundreds of miles of downstream dispersal. Lack of distance to accommodate the extended downstream dispersal period of free embryos on the Upper Missouri and Yellowstone Rivers is the predominant hypothesis for recruitment failure in the upper basin. Long drift distances in the Lower Missouri River may be responsible for shifting Lower Missouri River sub-populations further into the Middle Mississippi River. Physical understanding of drift processes indicates that mean velocities could be slowed through decreased discharges or increased channel hydraulic radius (width and topographic diversity) to reduce free-embryo dispersal distances. In addition, the probability that free embryos are transported into and retained in channel-margin habitats is theoretically amenable to channel re-engineering that would increase cross-channel secondary currents in bends or channel expansions. Considerable uncertainty persists, however, about whether extended drift of Lower Missouri River larvae is responsible for recruitment failure. If drift distance is limiting, it is important to discern whether it would be advisable to retain larvae within the Missouri River, and where along the river restoration projects should be placed to optimize survival and growth of age-0 and juvenile sturgeon. Longitudinal differences in female pallid sturgeon fecundity lend support to the hypothesis that recruitment failure may be due, in part, to fish having insufficient nutrition to produce the numbers of gametes needed for the population to grow, perhaps because of simultaneous declines in prey-fish populations and their habitats. Establishing a chain of causality from habitat decline, to prey-fish populations, to sturgeon diets, to sturgeon fecundity, and to pallid sturgeon population growth presents a considerable scientific challenge. In addition to the dominant hypotheses relating pallid sturgeon populations to changes in flow regime and channel morphology, other factors have been identified that might be sources of stress and contribute to recruitment failure. Among these are water quality and contaminants. Ambient water-quality monitoring on the Missouri River has demonstrated summer episodes when dissolved oxygen dips below 5 milligrams per liter, a threshold that may be stressful especially to age-0 and juvenile sturgeon. Documented cases of intersex in shovelnose and pallid sturgeon indicate that agricultural and municipal sources of endocrine disrupting chemicals also may have a role in pallid sturgeon recruitment failure. Scientific understanding of the ecological requirements of pallid sturgeon has increased almost exponentially in the last two decades, and efforts are now turning from understanding fundamental biology of the species to quantifying how population dynamics relate to potential management actions. Progress in developing the science needed to inform management actions on the Missouri River may benefit from continuation of monitoring of reproductive cycles, reproductive movements, growth, and survival of telemetry tagged adults, increased emphasis on focused, complementary field and laboratory studies of factors influencing early life history, implementation of studies to resolve the role of food limitations in growth, survival, and reproductive condition, and implementation of studies designed specifically to parameterize models linking management to populations.

Missouri River

Katmai National Park and Preserve and Alagnak Wild River: Geologic resources inventory report

The Geologic Resources Inventory (GRI) is one of 12 inventories funded by the National Park Service (NPS) Inventory and Monitoring Program. The Geologic Resources Division of the NPS Natural Resource Stewardship and Science Directorate administers the GRI. This GRI report was written for resource managers to support science-informed decision making. It may also be useful for interpretation. The report was prepared using available geologic information. Chapters of the report discuss distinctive geologic features and processes, describe the geologic history leading to the present- day landscape, highlight geologic issues facing resource managers, and provide information about the associated GRI geologic map data. A poster (Plate 1, in pocket) illustrates these data.

Alaska

USGS Environmental health science strategy: providing environmental health science for a changing world: Public review release

America has an abundance of natural resources. We have bountiful clean water, fertile soil, and unrivaled national parks, wildlife refuges, and public lands. These resources enrich our lives and preserve our health and wellbeing. These resources have been maintained because of our history of respect for their value and an enduring commitment to their vigilant protection. Awareness of the social, economic, and personal value of the health of our environment is increasing. The emergence of environmentally driven diseases caused by environmental exposure to contaminants and pathogens is a growing concern worldwide. New health threats and patterns of established threats are affected by both natural and anthropogenic changes to the environment. Human activities are key drivers of emerging (new and re-emerging) health threats. Societal demands for land and natural resources, a better quality of life, improved economic prosperity, and the environmental impacts associated with these demands will continue to increase. Natural earth processes, climate trends, and related climatic events will add to the environmental impact of human activities. These environmental drivers will influence exposure to disease agents, including viral, bacterial, prion, and fungal pathogens, parasites, natural earth materials, toxins and other biogenic compounds, and synthetic chemicals and substances. The U.S. Geological Survey (USGS) defines environmental health science broadly as the interdisciplinary study of relations among the quality of the physical environment, the health of the living environment, and human health. The interactions among these three spheres are driven by human activities, ecological processes, and natural earth processes; the interactions affect exposure to contaminants and pathogens and the severity of environmentally driven diseases in animals and people. This definition provides USGS with a framework for synthesizing natural science information from across the Bureau and providing it to environmental, natural resource, agricultural, and public-health managers. The USGS is a Federal science agency with a broad range of natural science expertise relevant to environmental health. USGS provides scientific information and tools as a scientific basis for management and policy decision making. USGS specializes in science at the environment-health interface, by characterizing the processes that affect the interaction among the physical environment, the living environment, and people, and the resulting factors that affect ecological and human exposure to disease agents. This report describes a 10-year strategy that encompasses the portfolio of USGS environmental health science. It summarizes national environmental health priorities that USGS is best suited to address, and will serve as a strategic framework for USGS environmental health science goals, actions, and outcomes for the next decade. Implementation of this strategy is intended to aid coordination of USGS environmental health activities and to provide a focal point for disseminating information to stakeholders. The "One Health" paradigm advocated by the World Health Organization (WHO, 2011), and the American Veterinary Medicine Association (AVMA, 2008), among others, is based on a general recognition that the health of humans, animals, and the environment are inextricably linked. Thus, successful efforts to protect that health will require increased interdisciplinary research and increased communication and collaboration among the broader scientific and health community. This strategy is built upon that paradigm. The vision, mission, and five cornerstone goals of the USGS Environmental Health Science Strategy were developed with significant input from a wide range of stakeholders. Vision - The USGS is a premier source of the environmental health science needed to safeguard the health of the environment, fish, wildlife, and people. Mission - The mission of USGS in environmental health science is to contribute scientific information to environmental, natural resource, agricultural, and public-health managers, who use that science to support sound decision making. USGS provides the science to: - Goal 1: Identify, prioritize, and detect contaminants and pathogens of emerging environmental concern. - Goal 2: Reduce the impact of contaminants on the environment, fish, wildlife, and people. - Goal 3: Reduce the impact of pathogens on the environment, fish, wildlife, and people. - Goal 4: Discover the complex interactions and combined effects of exposure to contaminants and pathogens. - Goal 5: Prepare for and respond to environmental impacts and related health threats of natural and anthropogenic disasters. Goals 1 through 4 are intended to provide science to address environmental health threats in a logical order, from informing prevention and preparedness, to supporting systematic management response to environmental health issues. Goal 4 addresses the interaction among contaminants and pathogens, an issue of emerging concern in environmental health science. Goal 5 acknowledges the fact that natural and anthropogenic disasters can cause immediate and prolonged adverse environmental health threats. This strategy proposes that USGS take the following strategic science actions to achieve each of the five goals of this strategy: Goal 1: Identify, prioritize, and detect contaminants and pathogens of emerging environmental concern. - Strategic Science Action 1. - Prioritize contaminants and pathogens of emerging concern to guide research, detection, and management activities. - Strategic Science Action 2. - Conduct surveillance and monitoring to provide early warning of emerging health threats. - Strategic Science Action 3. - Develop approaches and tools that identify vulnerable environmental settings, ecosystems, and species. Goal 2: Reduce the impact of contaminants on the environment, fish, wildlife, and people. - Strategic Science Action 1. - Systematically characterize the sources, occurrence, transport and fate of environmental contaminants to guide efforts to manage and mitigate contamination. - Strategic Science Action 2. - Evaluate the threats of contamination on the health of the environment, fish, wildlife, and people, and inform the associated management and protection efforts. - Strategic Science Action 3. - Characterize potential human exposure to support establishment of health-based standards or guidelines and contamination-reduction efforts. Goal 3: Reduce the impact of pathogens on the environment, fish, wildlife, and people. - Strategic Science Action 1. - Determine the biotic and abiotic factors that control the ecology of infectious diseases affecting natural populations of aquatic and terrestrial species and potential transmission to other animals and humans. - Strategic Science Action 2. - Establish how natural and anthropogenic environmental changes affect the distribution and severity of infectious diseases in natural populations of aquatic and terrestrial species and potential transmission to other animals and humans. - Strategic Science Action 3. - Develop surveillance systems to identify changing patterns of disease activity in priority geographic areas. Goal 4: Discover the complex interactions and combined effects of exposure to contaminants and pathogens. - Strategic Science Action 1. - Identify how exposure to one class of disease agents (contaminants or pathogens) can make an organism more susceptible to effects from exposure to the other class of disease agents. - Strategic Science Action 2. - Implement interdisciplinary studies that characterize the effects of combined exposure to pathogens and contaminants. Goal 5: Prepare for and respond to the environmental impacts and related health threats of natural and anthropogenic disasters. - Strategic Science Action 1. - Establish a formal interdisciplinary science capability to rapidly assess the environmental health risks associated with disasters. - Strategic Science Action 2. - Enhance methods to anticipate, prepare for, and identify environmental, ecological, and related health impacts of future disasters. This strategy is one of seven USGS science strategies developed concurrently: - Climate and Land Use Change - Core Science Systems - Ecosystems - Energy and Mineral Resources - Environmental Health - Natural Hazards - Water. This strategy describes how USGS will address the highest priority environmental health issues facing the Nation. The ultimate intended outcome of this science strategy is prevention and reduction of adverse impacts to the quality of the environment, the health of our living resources, and human health. Communication with, and receiving input from, partners and stakeholders regarding their science needs is essential for successful implementation of this strategy. It is incumbent on USGS to reach out to all stakeholders to ensure that USGS efforts are focused on the highest priority environmental health issues and that products are provided in the most timely and usable form to all those who can use them. USGS must reach out to the scientific community, internally and externally, to ensure that our efforts are integrated with and take full advantage of the activities of others.

Open-File Report

Understanding tidal marsh trajectories: Evaluation of multiple indicators of marsh persistence

Robust assessments of ecosystem stability are critical for informing conservation and management decisions. Tidal marsh ecosystems provide vital services, yet are globally threatened by anthropogenic alterations to physical and biological processes. A variety of monitoring and modeling approaches have been undertaken to determine which tidal marshes are likely to persist into the future. Here, we conduct the most robust comparison of marsh metrics to date, building on two foundational studies that had previously and independently developed metrics for marsh condition. We characterized pairs of marshes with contrasting trajectories (of marsh cover ) across six regions of the United States, using a combination of remote-sensing and field-based metrics. We also quantified decadal trends in marsh conversion to mudflat/open water at these twelve marshes. Our results suggest that metrics quantifying the distribution of vegetation across an elevational gradient represent the best indicators of marsh trajectories. The unvegetated to vegetated ratio and flood-ebb sediment differential also served as valuable indicators. No single metric universally predicted marsh trajectories, and therefore a more robust approach includes a suite of spatially integrated, landscape-scale metrics that are mostly obtainable from remote sensing. Data from surface elevation tables and marker horizons revealed that degrading marshes can have higher rates of vertical accretion and elevation gain than more intact counterparts, likely due to longer inundation times potentially combined with internal recycling of material. A high rate of elevation gain relative to local sea-level rise has been considered critical to marsh persistence, but our results suggest that it also may serve as a signature of degradation in marshes that have already begun to deteriorate. This investigation, with rigorous comparison and integration of metrics initially developed independently, tested at a broad geographic scale, provides a model for collaborative science to develop management tools for improving conservation outcomes.

Environmental Research Letters

U.S. Geological Survey environmental health science strategy — Providing environmental health science for a changing world

Executive Summary America has an abundance of natural resources. We have bountiful clean water, fertile soil, and unrivaled national parks, wildlife refuges, and public lands. These resources enrich our lives and preserve our health and wellbeing. These resources have been maintained because of our history of respect for their value and an enduring commitment to their vigilant protection. Awareness of the social, economic, and personal value of the health of our environment is increasing. The emergence of environmentally driven diseases caused by exposure to contaminants and pathogens is a growing concern worldwide. New health threats and patterns of established threats are affected by both natural and anthropogenic changes to the environment. Human activities are key drivers of emerging (new and re-emerging) health threats. Societal demands for land and natural resources, quality of life, and economic prosperity lead to environmental change. Natural earth processes, climate trends, and related climatic events will compound the environmental impact of human activities. These environmental drivers will influence exposure to disease agents, including viral, bacterial, prion, and fungal pathogens, parasites, synthetic chemicals and substances, natural earth materials, toxins, and other biogenic compounds. The U.S. Geological Survey (USGS) defines environmental health science broadly as the interdisciplinary study of relations among the quality of the physical environment, the health of the living environment, and human health. The interactions among these three spheres are driven by human activities, ecological processes, and natural earth processes; the interactions affect exposure to contaminants and pathogens and the severity of environmentally driven diseases in animals and people. This definition provides USGS with a framework for synthesizing natural science information from across the Bureau and providing it to environmental, natural resource, agricultural, and public health managers. USGS specializes in science at the environment-health interface, by characterizing the processes that affect the interaction among the physical environment, the living environment, and people, and the resulting factors that affect ecological and human exposure to disease agents. The USGS is a Federal science agency with a broad range of natural science expertise relevant to environmental health. USGS provides scientific information and tools as a scientific basis for management and policy decisionmaking. This report describes a 10-year strategy that encompasses the portfolio of USGS environmental health science. It summarizes national environmental health priorities that USGS is best suited to address, and will serve as a strategic framework for USGS environmental health science goals, actions, and outcomes for the next decade. Implementation of this strategy is intended to aid coordination of USGS environmental health activities and to provide a focal point for disseminating information to stakeholders. The “One Health” paradigm advocated by the World Health Organization (WHO; World Health Organization, 2011), and the American Veterinary Medical Association (AVMA; American Veterinary Medical Association, 2008), among others, is based on a general recognition that the health of humans, animals, and the environment are inextricably linked. Thus, successful efforts to protect that health will require increased interdisciplinary research and increased communication and collaboration among the broader scientific and health community. This strategy is built upon that paradigm.

Circular

Mechanistic invasive species management models and their application in conservation

Management strategies to address the challenges associated with invasive species are critical for effective conservation. An increasing variety of mathematical models offer insight into invasive populations, and can help managers identify cost effective prevention, control, and eradication actions. Despite this, as model complexity grows, so does the inaccessibility of these tools to conservation practitioners making decisions about management. Here, we seek to narrow the science-practice gap by reviewing invasive species management models (ISMMs). We define ISMMs as mechanistic models used to explore invasive species management strategies, and include reaction-advection–diffusion models, integrodifference equations, gravity models, particle transport models, nonspatial and spatial discrete-time population growth models, cellular automata, and individual-based models. For each approach, we describe the model framework and its implementation, discuss strengths and weaknesses, and give examples of conservation applications. We conclude by discussing how ISMMs can be used in concert with adaptive management to address scientific uncertainties impeding action and with multiple objective decision processes to evaluate tradeoffs among management objectives. We undertook this review to support more effective decision-making involving invasive species by providing conservation practitioners with the information they need to identify tools most useful for their applications.

Conservation Science and Practice

Balancing monitoring and management in the adaptive management of an invasive species

Efficient allocation of managers' limited resources is necessary to effectively control invasive species, but determining how to allocate effort between monitoring and management over space and time remains a challenge. In an adaptive management context, monitoring data are key for gaining knowledge and iteratively improving management, but monitoring costs money. Community science or other opportunistic monitoring data present an opportunity for managers to gain critical knowledge without a substantial reduction in management funds. We designed a management strategy evaluation to investigate optimal spatial allocation of resources to monitoring and management, while also exploring the potential for community science data to improve decision-making, using adaptive management of invasive flowering rush ( Butomus umbellatus ) in the Columbia River, USA, as a case study. We evaluated management and monitoring alternatives under two invasion conditions, a well-established invasion and an emerging invasion, for both risk-neutral and risk-averse decision makers. Simulations revealed that regardless of invasion condition or managers' risk tolerance, allocating effort outward from the estimated center of invasion ( Epicenter prioritization) resulted in the lowest overall level of infestation at the end of management. This allocation outperformed alternatives in which management occurred in fixed areas ( Linear prioritization) and alternatives that targeted patchily distributed areas with the highest estimated infestation level of the invasive species ( High invasion prioritization). Additionally, management outcomes improved when more resources were allocated toward removal effort than monitoring effort, and the addition of community science data improved outcomes only under certain scenarios. Finally, actions that led to the best outcomes often did not produce the most accurate and precise estimates of parameters describing system function, emphasizing the importance of using value of information principles to guide monitoring. Our adaptive management approach is adaptable to many invasive species management contexts in which ongoing monitoring allows management strategies to be updated over time.

Oregon, Washington

Long-term apparent survival of a cold-stunned subpopulation of juveniles green turtles

Understanding the effects of extreme weather on animal populations is fundamental to ecological and conservation sciences and species management. Climate change has resulted in both warm and cold temperature extremes, including an increased frequency of severe cold snaps at middle latitudes in North America. These unusually cold air masses cause rapid declines in nearshore ocean temperatures in coastal areas, with detrimental effects on marine organisms. Acute cold-stun events (hereafter cold stuns) occur when hundreds to thousands of resident juvenile sea turtles fail to escape shallow water during cold snaps. Human intervention through rescue and recovery largely mitigates direct juvenile sea turtle mortality, but delayed effects of cold stuns on rescued individuals are not well understood. Our objective was to examine long-term juvenile green turtle ( Chelonia mydas ) survival across four cold stuns of varying severity in St. Joseph Bay, Florida, between 2010 and 2018. We used the classic Cormack–Jolly–Seber model in a hierarchical Bayesian framework to estimate apparent survival (i.e., emigration and mortality) of rescued turtles at different time intervals. Our results indicated about half of a cohort rescued during a severe cold stun in January 2010 likely remained in the population 1 year later, with 10%–20% remaining 4 years later, and as few as 5% by 2018. The results also suggested higher apparent survival for cohorts rescued during two subsequent milder cold stuns. Emigration was a more plausible ecological explanation for low apparent survival than delayed mortality. Potential ecological mechanisms underlying emigration include a reduction in food availability and a behavioral response to either the severe weather event or handling during rescue (or both). However, the typical annual turnover of juvenile green turtles, though assumed low, is not well known in St. Joseph Bay. Thus, our apparent survival estimates may be reflective of higher-than-expected emigration in the broader population. Our study provides important baseline information about long-term juvenile sea turtle survival after cold stuns in temperate regions. We also highlight the importance of strategic monitoring between cold stuns to examine additional ecological questions.

Florida

Long-term ecosystem and biogeochemical research in Loch Vale watershed, Rocky Mountain National Park, Colorado

Loch Vale watershed was instrumented in 1983 with initial support from the National Acid Precipitation Assessment Program to ask whether ecosystems of Rocky Mountain National Park (RMNP) were affected by acidic atmospheric deposition. Research and monitoring activities were expanded in 1991 by the U.S. Geological Survey Water, Energy, and Biogeochemical Budgets program to understand the processes, and their interactions, controlling water, energy, and biogeochemical fluxes. With help from many collaborators we have characterized trends and patterns in atmospheric deposition, climate, and hydrology, including glaciers and other ice features. Instead of acidic deposition, we documented high atmospheric inputs of reactive nitrogen (Nr), and have studied the ecological consequences in soils, surface water, and vegetation. Using paleolimnology, we documented the onset of human-caused change to lake primary producers ca. 1950 in response to increased Nr deposition and warming. Our results provided the basis for the Colorado Nitrogen Deposition Reduction Plan, a state policy that aims to reduce Nr emissions to protect resources in RMNP by 2032. Carbon cycle research revealed mountain wetlands now release more carbon than they store, and respiration and methane flux occurs even during winter through deep snow packs. Trend analyses found export of Nr to be closely tied to atmospheric inputs, but can lag in response to drought. Current research explores consequences of the combination of warming, changes in precipitation dynamics, and atmospheric deposition of Nr and dust on stream and lake CO 2 dynamics, lake biology and trophic state, and soil carbon composition. Dramatic increases in park visitors have prompted studies on the effects of recreational use on water quality. New tools such as remote sensing and high frequency instream water quality sensors are being applied to lake and stream studies. Monitoring, combined with experiments, models, and spatial comparisons is an essential foundation for science-based resource management.

Colorado

Specific storage volumes: A useful tool for CO2 storage capacity assessment

Subsurface geologic strata have the potential to store billions of tons of anthropogenic CO2; therefore, geologic carbon sequestration can be an effective mitigation tool used to slow the rate at which levels of atmospheric CO2 are increasing. Oil and gas reservoirs, coal beds, and saline reservoirs can be used for CO2 storage; however, it is difficult to assess and compare the relative storage capacities of these different settings. Typically, CO2 emissions are reported in units of mass, which are not directly applicable to comparing the CO2 storage capacities of the various storage targets. However, if the emission values are recalculated to volumes per unit mass (specific volume) then the volumes of geologic reservoirs necessary to store CO2 emissions from large point sources can be estimated. The factors necessary to convert the mass of CO2 emissions to geologic storage volume (referred to here as Specific Storage Volume or 'SSV') can be reported in units of cubic meters, cubic feet, and petroleum barrels. The SSVs can be used to estimate the reservoir volume needed to store CO2 produced over the lifetime of an individual point source, and to identify CO2 storage targets of sufficient size to meet the demand from that given point source. These storage volumes also can then be projected onto the land surface to outline a representative "footprint," which marks the areal extent of storage. This footprint can be compared with the terrestrial carbon sequestration capacity of the same land area. The overall utility of this application is that the total storage capacity of any given parcel of land (from surface to basement) can be determined, and may assist in making land management decisions. ?? Springer Science+Business Media, LLC 2006.

Natural Resources Research

Stock assessment in inland fisheries: a foundation for sustainable use and conservation

Fisheries stock assessments are essential for science-based fisheries management. Inland fisheries pose challenges, but also provide opportunities for biological assessments that differ from those encountered in large marine fisheries for which many of our assessment methods have been developed. These include the number and diversity of fisheries, high levels of ecological and environmental variation, and relative lack of institutional capacity for assessment. In addition, anthropogenic impacts on habitats, widespread presence of non-native species and the frequent use of enhancement and restoration measures such as stocking affect stock dynamics. This paper outlines various stock assessment and data collection approaches that can be adapted to a wide range of different inland fisheries and management challenges. Although this paper identifies challenges in assessment, it focuses on solutions that are practical, scalable and transferrable. A path forward is suggested in which biological assessment generates some of the critical information needed by fisheries managers to make effective decisions that benefit the resource and stakeholders.

Reviews in Fish Biology and Fisheries

Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: A review

Mangrove ecosystems are considered vulnerable to climate change as coastal development limits the ecosystem services and adaptations important to their survival. Although they appear rather simple in terms of species diversity, their ecology is complex due to interacting geophysical forces of tides, surface runoff, river and groundwater discharge, waves, and constituents of sediment, nutrients and saltwater. These interactions limit developing a comprehensive framework for science-based sustainable management practices. A suite of models have been developed independently by various academic and government institutions worldwide to understand the dynamics of mangrove ecosystems and to provide ecological forecasting capabilities under different management scenarios and natural disturbance regimes. The models have progressed from statistical tables representing growth and yield to more sophisticated models describing various system components and processes. Among these models are three individual-based models (IBMs) (FORMAN, KIWI, and MANGRO). A comparison of models’ designs reveal differences in the details of process description, particularly, regarding neighbor competition among trees. Each model has thus its specific range of applications. Whereas FORMAN and KIWI are most suitable to address mangrove forest dynamics of stands, MANGRO focuses on landscape dynamics on larger spatial scale. A comparison of the models and a comparison of the models with empirical knowledge further reveal the general needs for further field and validation studies to advance our ecological understanding and management of mangrove wetlands.

Aquatic Botany

Hydraulic fracturing induced seismicity

Hydraulic fracturing (HF) is a technique that is used for extracting petroleum resources from impermeable host rocks. In this process, fluid injected under high pressure causes fractures to propagate. This technique has been transformative for the hydrocarbon industry, unlocking otherwise stranded resources; however, environmental concerns make HF controversial. One concern is HF‐induced seismicity, since fluids driven under high pressure also have the potential to reactivate faults. Controversy has inevitably followed these HF‐induced earthquakes, with economic and human losses from ground shaking at one extreme and moratoriums on resource development at the other. Here, we review the state of knowledge of this category of induced seismicity. We first cover essential background information on HF along with an overview of published induced earthquake cases to date. Expanding on this, we synthesize the common themes and interpret the origin of these commonalities, which include recurrent earthquake swarms, proximity to well bore, rapid response to stimulation, and a paucity of reported cases. Next, we discuss the unanswered questions that naturally arise from these commonalities, leading to potential research themes: consistent recognition of cases, proposed triggering mechanisms, geologically susceptible conditions, identification of operational controls, effective mitigation efforts, and science‐informed regulatory management. HF‐induced seismicity provides a unique opportunity to better understand and manage earthquake rupture processes; overall, understanding HF‐induced earthquakes is important in order to avoid extreme reactions in either direction.

Reviews of Geophysics

A comprehensive assessment of membrane bioreactor contaminant removal efficacy through analytical chemistry, fish exposures, and microbiome characterization

Treated municipal wastewater effluent is an important pathway for Contaminants of Emerging Concern (CEC) to enter aquatic ecosystems. As the aging wastewater infrastructure in many industrialized countries requires upgrades or replacement, assessing new treatment technologies in the context of CEC effects may provide additional support for science-based resource management. Here, we used three lines of evidence, analytical chemistry, fish exposure experiments, and fish and water microbiome analysis, to assess the effectiveness of membrane bioreactor treatment (MBR) to replace traditional activated sludge treatment. To do this, we sampled a municipal wastewater treatment plant with a split wastewater stream, a portion of which was treated with an MBR and another via an oxidation ditch (OXI). The OXI and MBR treatments substantially reduced most measured CECs compared to the primary effluent (PRI). Only pesticides and some pharmaceuticals were recalcitrant to both secondary treatment methods. While ammonia toxicity of PRI prevented its inclusion in fish exposure experiments, exposure of fish with waters from the OXI or MBR treated wastewater produced only subtle biological differences with no adverse apical outcomes. These findings were consistent with low chemically derived exposure: activity ratios for OXI and MBR. Microbiome analysis of fish and wastewater highlighted the significant reduction of microbial abundance and diversity in the MBR treatment compared to all other treatments. The comparable removal efficacy of CECs in MBR makes it an attractive alternative to traditional OXI, especially when MBR may eliminate the need for tertiary treatment for wastewater disinfection.

Environmental Toxicology and Chemistry

The expectations and challenges of wildlife disease research in the era of genomics: Forecasting with a horizon scan-like exercise

The outbreak and transmission of disease-causing pathogens are contributing to the unprecedented rate of biodiversity decline. Recent advances in genomics have coalesced into powerful tools to monitor, detect, and reconstruct the role of pathogens impacting wildlife populations. Wildlife researchers are thus uniquely positioned to merge ecological and evolutionary studies with genomic technologies to exploit unprecedented ‘Big Data’ tools in disease research; however, many researchers lack the training and expertise required to use these computationally intensive methodologies. To address this disparity, the inaugural ‘Genomics of Disease in Wildlife’ workshop assembled early to mid-career professionals with expertise across scientific disciplines (e.g., genomics, wildlife biology, veterinary sciences, and conservation management) for training in the application of genomic tools to wildlife disease research. A horizon scanning-like exercise, an activity to identify forthcoming trends and challenges, performed by the workshop participants identified and discussed five themes considered to be the most pressing to the application of genomics in wildlife disease research: i) “Improving Communication”, ii) “Methodological and Analytical Advancements”, iii) “Translation into Practice”, iv) “Integrating Landscape Ecology and Genomics”, and v) “Emerging New Questions”. Wide-ranging solutions from the horizon scan were international in scope, itemized both deficiencies and strengths in wildlife genomic initiatives, promoted the use of genomic technologies to unite wildlife and human disease research, and advocated best practices for optimal use of genomic tools in wildlife disease projects. The results offer a glimpse of the potential revolution in human and wildlife disease research possible through multi-disciplinary collaborations at local, regional, and global scales.

Journal of Heredity

Don Swanson: A field volcanology career worth celebrating

Don Swanson has profoundly influenced generations of volcanologists and has made major contributions to our understanding of both silicic and basaltic volcanic systems. He provides an exceptional example of how a gifted scientist can develop entirely new paradigms related to large-scale problems on the basis of decades of study, as exemplified by his work on the emplacement of flood basalts, monitoring and forecasting volcanic eruptions, the development of lava flows and domes, and the explosive nature of Kīlauea Volcano. Don has maintained exceptional productivity even while playing major leadership and management roles in science, and his research is intrinsically geological and rooted in painstaking fieldwork that is both collaborative and interdisciplinary. This volume recognizes Don’s career accomplishments by emphasizing his careful approach to volcanology and highlighting meticulous field observations as the basis for better understanding how volcanoes work.

Special Papers of the Geological Society of Americ

Field volcanology: A tribute to the distinguished career of Don Swanson

Don Swanson has profoundly influenced generations of volcanologists and has made major contributions to our understanding of both silicic and basaltic volcanic systems. He provides an exceptional example of how a gifted scientist can develop entirely new paradigms related to large-scale problems on the basis of decades of study, as exemplified by his work on the emplacement of flood basalts, monitoring and forecasting volcanic eruptions, the development of lava flows and domes, and the explosive nature of Kīlauea Volcano. Don has maintained exceptional productivity even while playing major leadership and management roles in science, and his research is intrinsically geological and rooted in painstaking fieldwork that is both collaborative and interdisciplinary. This volume recognizes Don’s career accomplishments by emphasizing his careful approach to volcanology and highlighting meticulous field observations as the basis for better understanding how volcanoes work.

Special Papers of the Geological Society of Americ

Assessing and implementing the concept of Blue Economy in Laurentian Great Lakes fisheries: Lessons from coupled human and natural systems

Inland fisheries often receive little to no attention in global discussions about sustainable development. The consequences of overlooking inland fisheries in sustainability dialogues are increasingly problematic as fisheries stressors (e.g., overharvest, species invasion, climate change, habitat modification) intensify. Elevating the global profile of inland fisheries requires an approach for quantifying and clearly conveying the ecological, economic, and societal values of these systems. One such approach involves the Blue Economy, a multifaceted concept initially used to describe the intersection of marine conservation and sustainable use of marine resources for economic growth. Although conceptually powerful, the Blue Economy has rarely been applied to inland waters and fisheries. To address this knowledge gap, we conceptualized Laurentian Great Lakes fisheries from a Blue Economy perspective. In particular, we evaluated the utility of the coupled human and natural systems (CHANS) framework for characterizing the ecological, economic, and societal values of Laurentian Great Lakes fisheries and associated contributions to the Blue Economy (e.g., human livelihoods, food security, recreation, conservation, economic prosperity). There are numerous opportunities to leverage CHANS methods (e.g., metacoupling, telecoupling) and associated mathematical models to advance fisheries science, inform fisheries management, and ultimately move toward a Blue Economy in the Laurentian Great Lakes. To that end, we demonstrated applications of CHANS methods, discussed strategies for communicating with stakeholders, and provided insights for navigating challenges to developing a Blue Economy in the Laurentian Great Lakes—a model that could be used in the African Great Lakes and other large ecosystems in the world.

Laurentian Great Lakes