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At least 379 records · Page 21Linked to original sources

Marine heatwaves affect breeding, diet and population size but not body condition of a range-edge little penguin colony

Significant marine heatwaves (MHWs) developed along the Western Australian coast in 1999 and 2011. Despite ecosystem losses and the southwards occurrence of many tropical fish species during and after the extreme MHW in 2011, there have been few studies on the effects of this MHW on seabirds, and no biological impacts related to the 1999 MHW have been reported. Using data from 1986-2019, we investigated the impacts of these events on breeding outcomes, body condition, diet composition, population size and mortality of little penguins on Penguin Island, in the temperate waters off Western Australia. Breeding outcomes were negatively impacted by the MHWs but body condition was not. Diet composition changed after the MHW, with sandy sprat Hyperlophus vittatus , the penguins’ typical major prey component, replaced by scaly mackerel Sardinella lemuru , a tropical fish species. Using an open robust design analysis that accounts for imperfect capture probabilities and staggered annual arrival and departure dates, we found that the population decreased by 80% following the 2011 MHW. Finally, more penguins died from starvation or from novel protozoal parasitic infections in 2011 and 2012 that were potentially introduced with the changed diet. This research highlights that the temporal and spatial influence of MHWs on seabirds depends on several factors. Furthermore, the magnitude and direction of a prey species’ response can be very localised and have significant impacts on avian predators. There are no obvious ways to mediate climate effects, but perhaps measures taken to reduce any synergistic impacts on prey abundance, particularly during MHW events, could be effective.

Penguin Island↗

Sample-size considerations for a study of shorebird nest survival in the 1002 Area, Arctic National Wildlife Refuge, Alaska

Authorization of lease sales for oil development in the 1002 Area of the Arctic National Wildlife Refuge has highlighted gaps in information about biological communities in the area. The U.S. Fish and Wildlife Service, which is planning a study to evaluate spatial variation in the nest survival of tundra-breeding shorebirds to identify hotspots with high nest survival, sought advice from the U.S. Geological Survey on how to predict which sampling designs might be successful in achieving the study goals. I used previously obtained data on nest survival from Alaska’s North Slope to develop a simulation study that explored the statistical consequences of various sampling designs in the context of expected ranges of values of biological parameters. Of all sampling parameters, the number of nests per plot had the strongest influence on the ability to detect hotspots, followed by number of years of monitoring and the age at which nests were found. The benefit of sampling 98 plots instead of 68 was relatively small. Ages of nests cannot be predicted a priori, so I developed a field reference chart to identify when further nest-searching would be useful for a given plot. This simulation study used the best available information, but values of biological parameters will become better defined following subsequent data collection in the 1002 Area. Data from upcoming field seasons could be used to refine this analysis and improve estimation of the expected results of the field study, thus maximizing the likelihood that data from the 1002 Area nest survival study will meet the monitoring goals.

Alaska↗

Disappearance of the cascades frog Rana cascadae at the southern end of its range, California, USA

It has recently become evident that amphibian species in many areas of the world have suffered serious declines. Healthy, seemingly well-protected populations have disappeared for no obvious reason. Data from historic accounts and museum records indicate that the Cascades frog, Rana cascadae , was once abundant at the southern end of its range in the vicinity of Lassen Volcanic National Park, California, USA. We conducted intensive searches at all 16 sites where R. cascadae had previously been recorded in the Lassen area, plus 34 additional sites with suitable habitat. Whereas earlier biologists could sometimes find 40 or more frogs at some of these sites, we were only able to locate two frogs at a single locality. This represents a precipitous decline over a period of <15 years. The decline seems to have been caused by a combination of local factors, including (1) the presence of non-native, predatory fish which have restricted habitat and limited dispersal of frogs; (2) loss of breeding habitat due to a five-year drought; and (3) the gradual loss of open meadows and associated aquatic habitats. The loss of frogs suggests that some common management practices in parks and wilderness areas may be endangering some of the species these areas are intended to protect. Similar local factors may account for amphibian declines reported elsewhere and should be carefully evaluated along with possible global effects.

California↗

Predicting organic floc transport dynamics in shallow aquatic ecosystems: Insights from the field, the laboratory, and numerical modeling

Transport of particulate organic material can impact watershed sediment and nutrient budgets and can alter the geomorphologic evolution of shallow aquatic environments. Prediction of organic aggregate (“floc”) transport in these environments requires knowledge of how hydraulics and biota affect the entrainment, settling, and aggregation of particles. This study evaluated the aggregation and field transport dynamics of organic floc from a low‐gradient floodplain wetland with flow‐parallel ridges and sloughs in the Florida Everglades. Floc dynamics were evaluated in a rotating annular flume and in situ in the field. Under present managed conditions in the Everglades, floc is not entrained by mean flows but is suspended via biological production in the water column and bioturbation. Aggregation was a significant process affecting Everglades floc at high flume flow velocities (7.0 cm s −1 ) and during recovery from high flow; disaggregation was not significant for the tested flows. During moderate flows when floc dynamics are hydrodynamically controlled, it is possible to model floc transport using a single “operative floc diameter” that accurately predicts fluxes downstream and to the bed. In contrast, during high flows and recovery from high flows, aggregation dynamics should be simulated. When entrained by flow in open‐water sloughs, Everglades floc will be transported downstream in multiple deposition and reentrainment events but will undergo net settling when transported onto ridges of emergent vegetation. We hypothesize that net transport of material from open to vegetated areas during high flows is critical for forming and maintaining distinctive topographic patterning in the Everglades and other low‐gradient floodplains.

Water Resources Research↗

Breeding biology of the Mountain Wren-Babbler (Gypsophila crassus)

Life history theory in ornithology has been mostly based on temperate birds in part because a relative paucity of biological data has been described for tropical species. Expanding our knowledge about life histories of tropical birds can help us to better understand global trends in life history strategies. To aid in this endeavor, we studied Mountain Wren-Babblers ( Gypsophila crassus ) breeding in Malaysian Borneo from 2009 to 2017. Relatively small (mean = 28.8 g), dark brown birds, they were cooperative breeders and foraged and cared for the nest in groups of typically 4 or 5 birds. We located 145 nests, which were globular and partially domed (91.8 mm mean opening height accounted for half of 180.7 mm total mean nest height), constructed from fern fronds on the outside and dead leaves on the inside, and most often placed on banks. Brooding attentiveness decreased with nestling age and was rare after day 7 once they began growing their primary feathers. Provisioning rate slightly increased with nestling age. Nestling growth rate constants were typical of many tropical birds, asymptoting a few days prior to fledging. Predation accounted for nearly all nest failures (87 of 88), with a daily nest predation rate for the total nesting period of 0.056 and nest success decreasing with elevation. Daily predation rate was highest during lay (0.117) and lowest during incubation (0.046). We compared these results with related species to identify potential explanations for the trends we described. The most notable result from these comparisons was that Mountain Wren-Babblers have a long incubation period (23.5 d) and adults only incubate for a small part of the day. This anomalous behavior emphasizes the importance of understanding the great variation in tropical life history strategies to ultimately improve life history theory.

Mount Kinabalu↗

Physical, chemical, and biological data for selected streams in Chester County, Pennsylvania, 1995-97

Physical, chemical, and biological data were collected at 51 sampling sites in Chester County, Pa., from 1970 through 1997 as part of the Stream Conditions of Chester County Program. This report presents data collected from 43 sites from 1995 through 1997 that constitute a continuation of the program. Physical data include water temperature, instantaneous stream discharge, pH, alkalinity, specific conductance, and dissolved oxygen. Chemical data collected include laboratory determinations of nutrients and major ions in whole water samples and selected metals, pesticides, gross polychlorinated biphenyls (PCB's), gross polychlorinated napthalenes (PCN's), and total carbon in stream-sediment samples. The biological data include benthic-macroinvertebrate populations. The data are presented without interpretation. Chester County is undergoing urbanization as agricultural land is converted to residential developments, commercial areas, and industrial and corporate parks. The major goal of the Stream Conditions of Chester County Program is to further the understanding of stream changes in response to urbanization.

Open-File Report↗

Science needs for determining the effects of climate change on harmful algal blooms in the southeastern United States

The Southeastern United States has many lakes, streams, and reservoirs that serve as important drinking water sources with recreational, agricultural, and ecological uses. However, harmful algal blooms (HABs) are becoming more common in these waters, causing health issues for humans and animals. HABs have been listed as a contaminant of emerging concern, and the magnitude, frequency, and duration of HABs appear to be increasing at the global scale. While it is well known that nutrients stimulate algae growth, it is not clear how climate change and other parameters stimulate the development of toxin production by HABs. The scientific literature describes parameters, such as storm occurrence, temperature, dissolved metals, erosion of soils, increasing length of growing season, discharge, and hydroperiod, that may affect algae growth and toxin production. Climate and hydrologic models address many of the physical and environmental parameters that influence HABs, but no climate models directly address HABs. This report compiles information from the existing literature pertaining to HABs and the modeling and forecasting of HABS. This compilation is done through the incorporation of climate change models. HAB research that involves climate change will require multiple disciplines that bring together ecologists, hydrologists, climatologists, engineers, economists, and new technology. Resource managers could use geographic data about the occurrence and distribution of HABs to develop models that identify waterbodies more vulnerable to HAB events. Development of such models will require teams capable of integrating biological, chemical, and physical factors. Model development will require additional research that can resolve anthropogenic and climate-related environmental factors to identify trends in freshwater HABs. The complexity and interconnectedness of the parameters that influence HAB occurrences will make model development challenging and require rigorous regional calibration.

Open-File Report↗

Physical, chemical, and biological data for selected streams in Chester County, Pennsylvania, 1969-80

This report presents physical, chemical, and biological data collected at 50 sampling sites on selected streams in Chester County, Pennsylvania from 1969 to 1980. The physical data consist of air and water temperature, stream discharge, suspended sediment, pH, specific conductance, and dissolved oxygen. The chemical data consist of laboratory determinations of total nutrients, major ions, and trace metals. The biological data consist of total coliform, fecal coliform, and fecal streptococcus bacteriological analyses, and benthicmacroinvertebrate population analyses. Brillouin's diversity index, maximum diversity, minimum diversity, and evenness for each sample, and median and mean Brilloiuin's diversity index, standard deviation, and standard error of the mean were calculated for the benthic-macroinvertebrate data for each site.

Pennsylvania↗

Quantifying salinity and season effects on eastern oyster clearance and oxygen consumption rates

There are few data on Crassostrea virginica physiological rates across the range of salinities and temperatures to which they are regularly exposed, and this limits the applicability of growth and production models using these data. The objectives of this study were to quantify, in winter (17 °C) and summer (27 °C), the clearance and oxygen consumption rates of C. virginica from Louisiana across a range of salinities typical of the region (3, 6, 9, 15 and 25). Salinity and season (temperature and reproduction) affected C. virginica physiology differently; salinity impacted clearance rates with reduced feeding rates at low salinities, while season had a strong effect on respiration rates. Highest clearance rates were found at salinities of 9–25, with reductions ranging from 50 to 80 and 90 to 95% at salinities of 6 and 3, respectively. Oxygen consumption rates in summer were four times higher than in winter. Oxygen consumption rates were within a narrow range and similar among salinities in winter, but varied greatly among individuals and salinities in summer. This likely reflected varying stages of gonad development. Valve movements measured at the five salinities indicated oysters were open 50–60% of the time in the 6–25 salinity range and ~ 30% at a salinity of 3. Reduced opening periods, concomitant with narrower valve gap amplitudes, are in accord with the limited feeding at the lowest salinity (3). These data indicate the need for increased focus on experimental determination of optimal ranges and thresholds to better quantify oyster population responses to environmental changes.

Marine Biology↗

Local extinction of the Asian tiger mosquito (Aedes albopictus) following rat eradication on Palmyra Atol

The Asian tiger mosquito, Aedes albopictus, appears to have been extirpated from Palmyra Atoll following rat eradication. Anecdotal biting reports, collection records, and regular captures in black-light traps showed the species was present before rat eradication. Since then, there have been no biting reports and no captures over 2 years of extensive trapping (black-light and scent traps). By contrast, the southern house mosquito, Culex quinquefasciatus, was abundant before and after rat eradication. We hypothesize that mammals were a substantial and preferred blood meal for Aedes , whereas Culex feeds mostly on seabirds. Therefore, after rat eradication, humans and seabirds alone could not support positive population growth or maintenance of Aedes . This seems to be the first documented accidental secondary extinction of a mosquito. Furthermore, it suggests that preferred host abundance can limit mosquito populations, opening new directions for controlling important disease vectors that depend on introduced species like rats.

Biology Letters↗

Wildfire, fuels reduction, and herpetofaunas across diverse landscape mosaics in northwestern forests

The herpetofauna (amphibians and reptiles) of northwestern forests (U.S.A.) is diverse, and many species are locally abundant. Most forest amphibians west of the Cascade Mountain crest are associated with cool, cascading streams or coarse woody material on the forest floor, which are characteristics of mature forests. Extensive loss and fragmentation of habitat resulted from logging across approximately 50% of old-growth forests in northern California and approximately 80% of stands in Oregon and Washington. There is a complex landscape mosaic and overlap of northern and southern biotic elements in the Klamath-Siskiyou Region along the Oregon and California border, creating a biodiversity hotspot. The region experiences many low-severity fires annually, punctuated by periodic major fires, including the Biscuit fire, the largest in North America in 2002. In the fire's northern portion, severe fire occurred on >50% of stands of young, managed trees but on only about 25–33% of old-growth stands. This suggests that the legacy of timber harvest may produce fire-prone stands. Calls for prescribed fire and thinning to reduce fuel loads will remove large amounts of coarse woody material from forests, which reduces cover for amphibians and alters nutrient inputs to streams. Our preliminary evidence suggests no negative effects of wildfire on terrestrial amphibians, but stream amphibians decrease following wildfire. Most reptiles are adapted to open terrain, so fire usually improves their habitat. Today, the challenge is to maintain biodiversity in western forests in the face of intense political pressures designed to 'prevent' catastrophic fires. We need a dedicated research effort to understanding how fire affects biota and to proactively investigate outcomes of fuel-reduction management on wildlife in western forests.

California, Oregon, Washington↗

Vascular Plant and Vertebrate Inventory of Chiricahua National Monument

This report summarizes the results of the first comprehensive inventory of vascular plants and vertebrates at Chiricahua National Monument (NM) in Arizona. This project was part of a larger effort to inventory vascular plants and vertebrates in eight National Park Service units in the Sonoran Desert Network of parks in Arizona and New Mexico. In 2002, 2003, and 2004 we surveyed for plants and vertebrates (amphibians, reptiles, birds, and mammals) at Chiricahua NM to document the presence of species within the boundaries of the monument. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the monument. This report is also the first summary of previous research from the monument and therefore it provides an important overview of survey efforts to date. We used data from our inventory and previous research to compile complete species lists for the monument and to assess inventory completeness. We recorded a total of 424 species, including 37 not previously found at the monument (Table 1). We found 10 species of non-native plants and one non-native mammal. Most non-native plants were found along the western boundary of the monument. Based on a review of our inventory and past research at the monument, there have been a total of 1,137 species of plants and vertebrates found at the monument. We believe the inventories of vascular plants and vertebrates are nearly complete and that the monument has one of the most complete inventories of any unit in the Sonoran Desert Network. The mammal community at the monument had the highest species richness (69 species) and the amphibian and reptile community was among the lowest species richness (33 species) of any park in the Sonoran Desert Network. Species richness of the plant and bird communities was intermediate. Among the important determinants of species richness for all groups is the geographic location of the monument at the intergrades between the Chihuahuan and Sonoran deserts with influences from the Great Plains and Madrean ecological provinces. The diversity of plants results from a wide variety of soil types and aspects (from cool, moist canyons to semi-desert grasslands to pine forests). In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found that some species were only associated with a single community type, most often the riparian areas or semi-desert grasslands. The area of highest species richness for most groups was the western-most portion of Bonita Canyon. The low species richness observed in the amphibian and reptile community was likely because the monument is at the elevational edge of the more species-rich semi-desert grasslands. This report includes management implications from our work and suggestions for how the monument staff might better maintain or enhance the unique biological resources of the monument. We suggest additional inventory, monitoring, and research studies and we identify components of our effort that could be improved upon, either through the application of new techniques (e.g., establishment of vegetation monitoring plots) or by extending the temporal and/or spatial scope of our work.

Open-File Report↗

2007 Weather and Aeolian Sand-Transport Data from the Colorado River Corridor, Grand Canyon, Arizona

Weather data constitute an integral part of ecosystem monitoring in the Colorado River corridor and are particularly valuable for understanding processes of landscape change that contribute to the stability of archeological sites. Data collected in 2007 are reported from nine weather stations in the Colorado River corridor through Grand Canyon, Ariz. The stations were deployed in February and March 2007 to measure wind speed and direction, rainfall, air temperature, relative humidity, and barometric pressure. Sand traps near each weather station collect windblown sand, from which daily aeolian sand-transport rates are calculated. The data reported here were collected as part of an ongoing study to test and evaluate methods for quantifying processes that affect the physical integrity of archeological sites along the river corridor; as such, these data can be used to identify rainfall events capable of causing gully incision and to predict likely transport pathways for aeolian sand, two landscape processes integral to the preservation of archeological sites. Weather data also have widespread applications to other studies of physical, cultural, and biological resources in Grand Canyon. Aeolian sand-transport data reported here, collected in the year before the March 2008 High-Flow Experiment (HFE) at Glen Canyon Dam, represent baseline data against which the effects of the 2008 HFE on windblown sand will be compared in future reports.

Open-File Report↗

A preliminary survey of marine contamination from mining-related activities on Marinduque Island, Philippines: porewater toxicity and chemistry results from a field trip, October 14-19, 2000

As a follow-up of an initial overview of environmental problems caused by mining activities on Marinduque Island, Philippines, USGS and TAMU-CC scientists went to Marinduque in October 2000 to do a preliminary assessment of potential impacts of mining-related activities on the marine environment. Like the previous visit in May 2000, the marine assessment was conducted at the invitation of Philippine Congressman Edmund O. Reyes. In this report we present the results of sediment porewater toxicity tests and chemical analyses. Toxicity tests consist of laboratory analyses for the assessment of adverse effects caused by environmental contaminants to animals or plants. Sediments (sand or mud) are known to accumulate contaminants (e.g., copper and other heavy metals). Therefore, it is common to perform toxicity tests using different phases of the sedimentary environment in order to analyze adverse effects of contaminants accumulated in the sediment. Sediment pore water (or interstitial water, i.e., the water distributed among the sediment grains) is a sedimentary phase which controls the bioavailability of contaminants to bottom dwelling aquatic organisms (both plants and animals). There are several different kinds of organisms with which toxicity tests can be performed. Among those, tests with sea urchin early life stages (gametes and embryos) are very common due to their high sensitivity to contaminants, ease of maintenance under laboratory conditions, and ecological importance, particularly in coral reefs. The basis of these tests is the exposure of gametes or embryos to the pore water to be analyzed for toxicity. If the pore water contains contaminants in levels that can adversely affect a number of marine species, fertilization and/or embryological development of sea urchins is inhibited. Chemical analyses provide additional information and aid in the interpretation of the toxicity test results. For the current study, chemical analyses were performed for the measurement of porewater concentrations of several heavy metals associated with copper mining activities. Pore waters for toxicological and chemical analyses were collected at several stations on the coast of Marinduque, near the mouths of the Boac and Mogpog rivers, and near the causeways formed by mine tailings disposal. Porewater samples were also collected at the Tres Reyes Marine Reserve, so that these non-contaminated samples could serve as a reference for test performance. Sea urchin embryological development and fertilization were only significantly impaired by two porewater samples, suggesting the presence of contaminants in toxic amounts at those stations. The toxic samples were collected near the up current side of the Calancan (Marcopper) mine tailings causeway (stations 2 and 3 – see figure 10). The pore water from station 2 also had the highest levels of heavy metals, particularly cadmium, cobalt, copper, nickel, lead and zinc (Table 5). The concentrations of cobalt, nickel and zinc were also elevated 2 at station 3. Copper concentrations were also elevated at the two river mouth stations (8 and 9) and near the CMI tailings causeway (station 7). Visual observations also indicated biological degradation due to heavy siltation and smothered coral at a gradient off the Calancan causeway, suggesting that siltation might also be causing a physical impact. This preliminary survey suggests that effects related to past mining activities are still evident and warrant a more comprehensive study to assess their severity and areal extent.

Open-File Report↗

Surface-water and climatological data, Salt Lake County, Utah, water year 1980

This report presents streamflow, water-quality, precipitation, and storm-runoff data collected in Salt Lake County, Utah, during the 1980 water year and certain water-quality data for the 1979 water year which were included for comparative purposes. Surface-water data consist of daily mean values of flow at 33 sites on natural streams, canals, and conduits. Water-quality data consist of chemical, biologic, and sediment analyses at 30 sites. Precipitation data consist of daily and monthly total at nine sites. Storm-runoff data consist of 5 and 15-minute interval discharge data for storms of July 1-2, August 19, and August 25, 1980, for most surface-water sites.

Utah↗

Accumulation of selenium in benthic bivalves and fine-grained sediments of San Francisco Bay, the Sacramento-San Joaquin Delta, and selected tributaries, 1984-1986

Fine-grained, oxidized, surface sediments and two benthic bivalves (Corbicula sp., a suspension-feeding freshwater clam, and Macoma balthica, a deposit-feeding brackish water clam) were used to examine spatial distributions of selenium within San Francisco Bay and the Sacramento/San Joaquin River Delta and to compare riverine with local inputs of biologically available selenium to this large, complex, urbanized estuary. Selenium concentrations in Corbicula were elevated in the western Delta and northern reach of San Francisco Bay compared to concentrations in Corbicula from river systems not enriched in selenium. Biologically available selenium did not appear to enter the southern Delta or northern reach of the Bay from the San Joaquin River, a possible source, in levels that could measurably influence bioaccumulation by Corbicula. Selenium concentrations in Macoma balthica also were elevated in southern South San Francisco Bay and near the western edge of Suisun Bay.

California↗

Pliocene climates of the Northern Hemisphere; abstracts of the joint US/USSR workshop on Pliocene paleoclimates, Moscow, USSR, April, 1990

A joint US-USSR workshop met at the Laboratory of Paleogeography of the Academy of Sciences of the USSR in Moscow from April 20th to 23rd, 1990 to discuss Pliocene paleoclimates and to develop a joint long- term research program. Soviet participants included more than fifteen scientists from across the USSR, and the United States was represented by four scientists from the U.S. Geological Survey (Table 1). As with the 1989 Denver Pliocene workshop (Gosnell and Poore, 1990), the objectives of the 1990 Moscow workshop included establishing the chronology and amplitude of Pliocene climatic changes, mapping the spatial patterns in these variations, and determining the biologic responses to climatic change (see also Cronin and Dowsett, 1991, for further Pliocene paleoclimatic studies). These data will form the basis for explorations of General Circulation Model simulations of Pliocene paleoclimates and will provide insights into the nature of climatic circulation in a warmer-than-modern mean global climate state.

Open-File Report↗

Cloning, expression, cellular distribution, and role in chemotaxis of a C5a receptor in rainbow trout: The first identification of a C5a receptor in a nonmammalian species

C3a, C4a, and C5a anaphylatoxins generated during complement activation play a key role in inflammation. C5a is the most potent of the three anaphylatoxins in eliciting biological responses. The effects of C5a are mediated by its binding to C5a receptor (C5aR, CD88). To date, C5aR has only been identified and cloned in mammalian species, and its evolutionary history remains ill-defined. To gain insights into the evolution, conserved structural domains, and functions of C5aR, we have cloned and characterized a C5aR in rainbow trout, a teleost fish. The isolated cDNA encoded a 350-aa protein that showed the highest sequence similarity to C5aR from other species. Genomic analysis revealed the presence of one continuous exon encoding the entire open reading frame. Northern blot analysis showed significant expression of the trout C5a receptor (TC5aR) message in PBLs and kidney. Flow cytometric analysis showed that two Abs generated against two different areas of the extracellular N-terminal region of TC5aR positively stained the same leukocyte populations from PBLs. B lymphocytes and granulocytes comprised the majority of cells recognized by the anti-TC5aR. More importantly, these Abs inhibited chemotaxis of PBLs toward a chemoattractant fraction purified from complement-activated trout serum. Our data suggest that the split between C5aR and C3aR from a common ancestral molecule occurred before the emergence of teleost fish. Moreover, we demonstrate that the overall structure of C5aR as well as its role in chemotaxis have remained conserved for >300 million years.

Journal of Immunology↗